Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G272700 Phaseolus vulgaris HOM05D005375 ORTHO05D006598 1.0e-215 753.4 479 100.0
Glyma.14G018200 Glycine max HOM05D005375 ORTHO05D006598 5.0e-194 681.4 488 91.6
VMungo0647G1984 Vigna mungo HOM05D005375 ORTHO05D006598 1.6e-187 659.8 499 86.0
Glyma.02G295200 Glycine max HOM05D005375 ORTHO05D006598 1.7e-181 639.8 480 86.2
Psat2g009920 Pisum sativum HOM05D005375 ORTHO05D006598 2.6e-174 615.9 500 81.8
TPR.G35360 Trifolium pratense HOM05D005375 ORTHO05D006598 1.5e-169 600.1 508 80.5
LjContig00272g0009776 Lotus japonicus HOM05D005375 ORTHO05D006598 2.2e-165 586.3 479 80.8
Manes.03G136300 Manihot esculenta HOM05D005375 ORTHO05D006598 1.3e-141 507.3 482 65.6
Ca_06349_v3 Cicer arietinum L. HOM05D005375 ORTHO05D006598 2.2e-141 506.5 480 61.7
Lj6g0028194 Lotus japonicus HOM05D005375 ORTHO05D006598 5.4e-140 501.9 479 70.8
Cfa020276 Carpinus fangiana HOM05D005375 ORTHO05D006598 4.6e-139 498.8 502 63.3
Medtr5g093880 Medicago truncatula HOM05D005375 ORTHO05D006598 6.0e-139 498.4 486 74.9
FAN18G4382 Fragaria x ananassa HOM05D005375 ORTHO05D006598 5.8e-134 481.9 484 68.8
Lalb_Chr04g0248131 Lupinus albus HOM05D005375 ORTHO05D006598 9.9e-134 481.1 507 72.0
FAN04G2161 Fragaria x ananassa HOM05D005375 ORTHO05D006598 1.3e-133 480.7 484 66.5
MD00G1179000 Malus domestica HOM05D005375 ORTHO05D006598 6.4e-133 478.4 483 64.8
FvH4_5g39180 Fragaria vesca HOM05D005375 ORTHO05D006598 8.4e-133 478.0 484 67.6
RcHm_v2.0_Chr7g0241441 Rosa chinensis HOM05D005375 ORTHO05D006598 3.2e-132 476.1 482 67.6
MD03G1294800 Malus domestica HOM05D005375 ORTHO05D006598 5.4e-132 475.3 496 57.9
TWI38G0072 Tripterygium wilfordii HOM05D005375 ORTHO05D006598 9.3e-132 474.6 491 59.1
FAN13G1970 Fragaria x ananassa HOM05D005375 ORTHO05D006598 1.2e-131 474.2 484 69.0
Ciclev10008309m.g Citrus clementina HOM05D005375 ORTHO05D006598 1.3e-130 470.7 498 61.2
FAN08G1518 Fragaria x ananassa HOM05D005375 ORTHO05D006598 5.1e-130 468.8 484 68.6
Thecc.07G027900 Theobroma cacao HOM05D005375 ORTHO05D006598 5.1e-130 468.8 482 61.8
Prupe.8G266900 Prunus persica HOM05D005375 ORTHO05D006598 1.3e-128 464.2 493 58.4
CSS0031566 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 1.5e-126 457.2 496 61.1
QL08p007584 Quercus lobata HOM05D005375 ORTHO05D006598 2.0e-126 456.8 493 61.1
Rhsim06G0223700 Rhododendron simsii HOM05D005375 ORTHO05D006598 1.3e-125 454.1 485 56.9
Nitab4.5_0004445g0070 Nicotiana tabacum HOM05D005375 ORTHO05D006598 4.9e-125 452.2 492 56.5
CSS0021148 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 1.4e-124 450.7 489 57.9
CSS0047507 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 9.3e-124 448.0 489 56.6
Sabra11G0065600 Salix brachista HOM05D005375 ORTHO05D006598 1.2e-123 447.6 484 64.3
Duzib170G0122 Durio zibethinus HOM05D005375 ORTHO05D006598 2.1e-123 446.8 480 60.4
Potri.011G082000 Populus trichocarpa HOM05D005375 ORTHO05D006598 6.0e-123 445.3 491 65.4
TAR627G0180 Trochodendron aralioides HOM05D005375 ORTHO05D006598 1.1e-121 441.0 494 59.5
Gohir.D05G374900 Gossypium hirsutum HOM05D005375 ORTHO05D006598 1.9e-121 440.3 511 53.6
Gorai.009G443800 Gossypium raimondii HOM05D005375 ORTHO05D006598 1.9e-121 440.3 511 53.6
Aqoxy1G04123 Aquilegia oxysepala HOM05D005375 ORTHO05D006598 9.6e-121 438.0 482 60.0
Dinv22229 Davidia involucrata HOM05D005375 ORTHO05D006598 4.8e-120 435.6 485 55.5
Gohir.A04G011700 Gossypium hirsutum HOM05D005375 ORTHO05D006598 8.1e-120 434.9 511 53.4
ClCG10G005050 Citrullus lanatus HOM05D005375 ORTHO05D006598 1.1e-119 434.5 512 52.7
Nitab4.5_0005078g0020 Nicotiana tabacum HOM05D005375 ORTHO05D006598 1.8e-119 433.7 486 55.6
Atru.chr2.3553 Acer truncatum HOM05D005375 ORTHO05D006598 6.9e-119 431.8 489 58.9
Atru.chr2.3534 Acer truncatum HOM05D005375 ORTHO05D006598 1.2e-118 431.0 489 57.3
TAR629G0374 Trochodendron aralioides HOM05D005375 ORTHO05D006598 2.6e-118 429.9 482 54.6
CsaV3_3G004730 Cucumis sativus L. HOM05D005375 ORTHO05D006598 5.8e-118 428.7 484 55.0
CiPaw.11G194800 Carya illinoinensis HOM05D005375 ORTHO05D006598 6.5e-117 425.2 492 58.5
AUR62020339 Chenopodium quinoa HOM05D005375 ORTHO05D006598 1.9e-116 423.7 492 58.3
CAN.G337.55 Capsicum annuum HOM05D005375 ORTHO05D006598 3.2e-116 422.9 489 59.7
Nitab4.5_0001160g0010 Nicotiana tabacum HOM05D005375 ORTHO05D006598 5.5e-116 422.2 496 55.6
Nitab4.5_0007749g0010 Nicotiana tabacum HOM05D005375 ORTHO05D006598 1.6e-115 420.6 497 56.5
AUR62015884 Chenopodium quinoa HOM05D005375 ORTHO05D006598 2.1e-115 420.2 492 58.7
Cc05_g14340 Coffea canephora HOM05D005375 ORTHO05D006598 2.1e-115 420.2 500 54.8
PGSC0003DMG400022298 Solanum tuberosum HOM05D005375 ORTHO05D006598 2.7e-115 419.9 483 56.7
Eucgr.F03508 Eucalyptus grandis HOM05D005375 ORTHO05D006598 1.1e-113 414.5 496 60.3
ECA240G0086 Erigeron canadensis HOM05D005375 ORTHO05D006598 7.4e-113 411.8 489 56.0
vmacro22307 Vaccinium macrocarpon HOM05D005375 ORTHO05D006598 9.6e-113 411.4 539 50.5
MSTRG.6961 Avicennia marina HOM05D005375 ORTHO05D006598 2.1e-112 410.2 490 53.5
SGA_v2.0_scaffold8G04388 Striga asiatica HOM05D005375 ORTHO05D006598 8.2e-112 408.3 497 51.7
Lalb_Chr00c48g0412951 Lupinus albus HOM05D005375 ORTHO05D006598 2.6e-110 403.3 484 68.0
PSO210G0227 Papaver somniferum HOM05D005375 ORTHO05D006598 5.9e-110 402.1 500 58.4
HanXRQChr03g0076881 Helianthus annuus HOM05D005375 ORTHO05D006598 2.2e-109 400.2 486 57.6
HanXRQChr13g0408271 Helianthus annuus HOM05D005375 ORTHO05D006598 2.2e-109 400.2 505 51.9
PSO302G0025 Papaver somniferum HOM05D005375 ORTHO05D006598 2.2e-109 400.2 498 57.8
Dinv40796 Davidia involucrata HOM05D005375 ORTHO05D006598 1.1e-108 397.9 519 50.3
Duzib268G0742 Durio zibethinus HOM05D005375 ORTHO05D006598 1.1e-108 397.9 482 57.1
Migut.M01705 Erythranthe guttata HOM05D005375 ORTHO05D006598 1.4e-108 397.5 488 52.0
MELO3C014172.2 Cucumis melo HOM05D005375 ORTHO05D006598 1.9e-108 397.1 484 54.1
EL10Ac4g07689 Beta vulgaris HOM05D005375 ORTHO05D006598 3.5e-107 392.9 490 55.5
MSTRG.12999 Avicennia marina HOM05D005375 ORTHO05D006598 6.7e-106 388.7 494 50.6
Solyc07g064980.3 Solanum lycopersicum HOM05D005375 ORTHO05D006598 2.5e-105 386.7 483 59.0
Sopen07g033190 Solanum pennellii HOM05D005375 ORTHO05D006598 8.2e-104 381.7 482 58.1
Gorai.002G093900 Gossypium raimondii HOM05D005375 ORTHO05D006598 2.4e-103 380.2 491 52.1
DCAR_022591 Daucus carota HOM05D005375 ORTHO05D006598 4.1e-103 379.4 487 53.0
BolC1t02212H Brassica oleracea HOM05D005375 ORTHO05D006598 9.0e-103 378.3 497 50.1
CARHR234370 Cardamine hirsuta HOM05D005375 ORTHO05D006598 1.5e-102 377.5 516 49.4
Peaxi162Scf00235g00721 Petunia axillaris HOM05D005375 ORTHO05D006598 1.5e-102 377.5 496 53.2
Gohir.D01G071200 Gossypium hirsutum HOM05D005375 ORTHO05D006598 2.6e-102 376.7 491 52.1
Sp7g24730 Schrenkiella parvula HOM05D005375 ORTHO05D006598 4.5e-102 375.9 498 50.2
Gohir.A01G084800 Gossypium hirsutum HOM05D005375 ORTHO05D006598 1.3e-101 374.4 494 51.2
COL.COLO4_09738 Corchorus olitorius HOM05D005375 ORTHO05D006598 6.5e-101 372.1 472 53.6
THA.LOC104811633 Tarenaya hassleriana HOM05D005375 ORTHO05D006598 6.5e-101 372.1 494 50.0
Carub.0007s1409 Capsella rubella HOM05D005375 ORTHO05D006598 1.2e-99 367.9 502 49.0
AT4G26750 Arabidopsis thaliana HOM05D005375 ORTHO05D006598 3.6e-99 366.3 499 48.5
CANSAT11G2127 Cannabis sativa HOM05D005375 ORTHO05D006598 1.8e-98 364.0 503 49.5
BraA01t01755Z Brassica rapa HOM05D000504 ORTHO05D000403 8.8e-98 361.7 496 52.6
Aa31LG5G12180 Aethionema arabicum HOM05D005375 ORTHO05D006598 1.1e-97 361.3 497 51.3
Migut.H01791 Erythranthe guttata HOM05D005375 ORTHO05D006598 3.3e-97 359.8 491 47.9
AL7G26080 Arabidopsis lyrata HOM05D005375 ORTHO05D006598 9.7e-97 358.2 501 48.5
Hma1.2p1_1332F.1_g276150 Hydrangea macrophylla HOM05D005375 ORTHO05D006598 3.7e-96 356.3 488 52.7
unitig_747.g21591 Utricularia gibba HOM05D005375 ORTHO05D006598 8.2e-96 355.1 486 52.5
A01p18000 Brassica napus HOM05D000504 ORTHO05D000403 6.9e-95 352.1 496 48.6
Os06g0308800 Oryza sativa ssp. japonica HOM05D005375 ORTHO05D006598 3.4e-94 349.7 509 54.4
Lsat_1_v5_gn_9_90720 Lactuca sativa HOM05D005375 ORTHO05D006598 8.5e-93 345.1 494 54.7
Thhalv10025139m.g Eutrema salsugineum HOM05D005375 ORTHO05D006598 1.1e-92 344.7 494 51.4
C01p22820 Brassica napus HOM05D000504 ORTHO05D006598 1.9e-92 344.0 496 47.6
Nn1g07350 Nelumbo nucifera HOM05D005375 ORTHO05D006598 2.3e-90 337.0 496 55.0
PGR031G3708 Punica granatum HOM05D005375 ORTHO05D006598 5.1e-90 335.9 467 53.1
Lj1C881T5 Lonicera japonica HOM05D005375 ORTHO05D006598 1.3e-88 331.3 447 54.8
CDE07G0643 Ceratophyllum demersum HOM05D005375 ORTHO05D006598 1.7e-88 330.9 489 45.6
ATR1101G026 Amborella trichopoda HOM05D005375 ORTHO05D006598 4.8e-88 329.3 486 46.5
Actinidia05060 Actinidia chinensis HOM05D005375 ORTHO05D006598 8.2e-88 328.6 473 48.2
SEGI_32868 Sequoiadendron giganteum HOM05D005375 ORTHO05D006598 8.2e-88 328.6 529 44.8
Sed0014032 Sechium edule HOM05D005375 ORTHO05D006598 3.5e-86 323.2 451 47.0
GSVIVG01037729001 Vitis vinifera HOM05D005375 ORTHO05D006598 2.5e-84 317.0 198 80.3
CDE04G3304 Ceratophyllum demersum HOM05D005375 ORTHO05D006598 1.0e-82 311.6 489 44.0
Oeu054311.1 Olea europaea HOM05D005375 ORTHO05D006598 8.8e-82 308.5 510 43.7
Zm00001eb281230 Zea mays HOM05D005375 ORTHO05D006598 2.4e-79 300.4 453 53.2
Cpa.g.sc284.2 Carica papaya HOM05D005375 ORTHO05D006598 7.7e-78 295.4 171 85.4
CSS0025851 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 2.2e-77 293.9 449 44.3
Mapoly0043s0080 Marchantia polymorpha HOM05D005375 ORTHO05D006598 4.0e-74 283.1 518 39.6
Haze_09747 Corylus avellana HOM05D005375 ORTHO05D006598 1.5e-73 281.2 520 46.3
HPP92_015778 Vanilla planifolia HOM05D005375 ORTHO05D006598 1.5e-73 281.2 184 78.3
Lj8A173T72 Lonicera japonica HOM05D005375 ORTHO05D006598 4.4e-73 279.6 473 41.6
TAR624G1027 Trochodendron aralioides HOM05D005375 ORTHO05D006598 6.3e-72 275.8 190 75.3
DCAR_016648 Daucus carota HOM05D005375 ORTHO05D006598 1.6e-70 271.2 424 50.0
SMO271G0101 Selaginella moellendorffii HOM05D005375 ORTHO05D006598 6.5e-69 265.8 476 43.9
BcaC09g52262 Brassica carinata HOM05D005375 ORTHO05D006598 6.8e-66 255.8 427 43.8
Pp3c12_1420 Physcomitrium patens HOM05D005375 ORTHO05D006598 2.0e-65 254.2 493 41.2
TWI39G0687 Tripterygium wilfordii HOM05D005375 ORTHO05D006598 2.6e-57 227.3 128 85.9
Lalb_Chr00c48g0413001 Lupinus albus HOM05D005375 ORTHO05D006598 2.9e-56 223.8 173 70.5
PGR031G2801 Punica granatum HOM05D005375 ORTHO05D006598 1.6e-54 218.0 422 40.3
Sc16g0005720 Simmondsia chinensis HOM05D005375 ORTHO05D006598 1.3e-53 214.9 390 42.1
SHI26566 Sapria himalayana HOM05D005375 ORTHO05D006598 8.9e-50 202.2 539 38.8
Actinidia32285 Actinidia chinensis HOM05D005375 ORTHO05D006598 4.0e-42 176.8 387 39.5
AagrBONN_evm.TU.Sc2ySwM_368.1760 Anthoceros agrestis HOM05D005375 ORTHO05D006598 1.2e-41 175.3 444 33.8
Cre03.g145227 Chlamydomonas reinhardtii HOM05D005375 ORTHO05D006598 3.5e-38 163.7 158 53.2
CBR_g50394 Chara braunii HOM05D005375 ORTHO05D006598 1.5e-33 148.3 462 33.3
Nn1g03334 Nelumbo nucifera HOM05D005375 ORTHO05D006598 3.4e-33 147.1 449 32.1
PRCOL_00004002 Prasinoderma coloniale HOM05D005375 ORTHO05D006598 4.9e-32 143.3 200 42.5
MCO03G124 Micromonas commoda HOM05D005375 ORTHO05D006598 3.2e-31 140.6 147 48.3
Actinidia37374 Actinidia chinensis HOM05D005375 ORTHO05D006598 4.0e-26 123.6 81 75.3
Ah.06g182230 Amaranthus hybridus HOM05D005375 ORTHO05D006598 2.0e-25 121.3 65 92.3
Zm00001eb381490 Zea mays HOM05D005375 ORTHO05D006598 3.8e-24 117.1 159 47.8
Actinidia20957 Actinidia chinensis HOM05D005375 ORTHO05D006598 2.4e-23 114.4 94 67.0
Hund23196 Selenicereus undatus HOM05D005375 ORTHO05D006598 5.6e-20 103.2 97 58.8
TAR624G1433 Trochodendron aralioides HOM05D005375 ORTHO05D006598 6.4e-16 89.7 116 52.6
C08p09960 Brassica napus HOM05D000504 ORTHO05D000403 2.4e-15 87.8 62 72.6
BolC8t48673H Brassica oleracea HOM05D000504 ORTHO05D000403 2.4e-15 87.8 62 72.6
PGR044G1312 Punica granatum HOM05D003929 ORTHO05D004499 7.9e-14 82.8 49 81.6
CAN.G4023.1 Capsicum annuum HOM05D005375 ORTHO05D006598 1.3e-13 82.0 102 45.1
CAN.G396.4 Capsicum annuum HOM05D005375 ORTHO05D006598 3.0e-13 80.9 123 40.7
MCO09G798 Micromonas commoda HOM05D005375 ORTHO05D006598 1.1e-12 79.0 200 31.5
CAN.G396.14 Capsicum annuum HOM05D005375 ORTHO05D006598 4.3e-12 77.0 70 54.3
BcaC07g38248 Brassica carinata HOM05D005375 ORTHO05D006598 1.4e-10 72.0 92 50.0
Lsat_1_v5_gn_8_116700 Lactuca sativa HOM05D000230 ORTHO05D000176 3.5e-06 57.4 125 31.2
Sp3g23340 Schrenkiella parvula HOM05D000230 ORTHO05D000176 7.9e-06 56.2 157 25.5


User provided reference genes

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