Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G262400 Phaseolus vulgaris HOM05D005325 ORTHO05D008457 1.3e-102 376.3 180 100.0
VMungo0647G2564 Vigna mungo HOM05D005325 ORTHO05D008457 1.6e-89 332.8 178 87.1
Glyma.02G225500 Glycine max HOM05D005325 ORTHO05D008457 5.5e-85 317.8 181 83.4
Glyma.14G192300 Glycine max HOM05D005325 ORTHO05D008457 3.5e-84 315.1 181 82.3
LjContig00155g0003403 Lotus japonicus HOM05D005325 ORTHO05D008457 1.4e-80 303.1 180 80.6
Ca_05587_v3 Cicer arietinum L. HOM05D005325 ORTHO05D008457 6.9e-80 300.8 183 78.1
arahy.Tifrunner.gnm1.ann1.VY3BKH Arachis hypogaea HOM05D005325 ORTHO05D008457 3.4e-79 298.5 184 78.3
arahy.Tifrunner.gnm1.ann1.CQ7B2G Arachis hypogaea HOM05D005325 ORTHO05D008457 3.2e-77 292.0 183 77.0
TPR.G24020 Trifolium pratense HOM05D005325 ORTHO05D008457 9.3e-77 290.4 184 75.0
Psat2g059320 Pisum sativum HOM05D005325 ORTHO05D008457 1.8e-75 286.2 180 74.4
Medtr5g069880 Medicago truncatula HOM05D005325 ORTHO05D008457 1.9e-74 282.7 183 71.6
Lalb_Chr04g0252301 Lupinus albus HOM05D005325 ORTHO05D008457 3.3e-74 282.0 178 71.9
Prupe.6G060500 Prunus persica HOM05D005325 ORTHO05D008457 5.7e-74 281.2 178 70.8
Cfa011661 Carpinus fangiana HOM05D005325 ORTHO05D008457 1.8e-72 276.2 179 70.9
Haze_24265 Corylus avellana HOM05D005325 ORTHO05D008457 3.1e-72 275.4 179 70.9
MELO3C025867.2 Cucumis melo HOM05D005325 ORTHO05D008457 5.3e-72 274.6 176 70.5
MD11G1079900 Malus domestica HOM05D005325 ORTHO05D008457 2.0e-71 272.7 178 69.7
RcHm_v2.0_Chr5g0068731 Rosa chinensis HOM05D005325 ORTHO05D008457 4.5e-71 271.6 178 68.5
FvH4_3g38250 Fragaria vesca HOM05D005325 ORTHO05D008457 1.3e-70 270.0 178 66.9
FAN11G0298 Fragaria x ananassa HOM05D005325 ORTHO05D008457 1.3e-70 270.0 178 66.9
QL01p037417 Quercus lobata HOM05D005325 ORTHO05D008457 5.0e-70 268.1 177 66.7
COL.COLO4_19112 Corchorus olitorius HOM05D005325 ORTHO05D008457 6.5e-70 267.7 177 67.2
CiPaw.13G080600 Carya illinoinensis HOM05D005325 ORTHO05D008457 1.4e-69 266.5 178 68.0
Thecc.09G305000 Theobroma cacao HOM05D005325 ORTHO05D008457 1.4e-69 266.5 177 65.0
FAN25G2817 Fragaria x ananassa HOM05D005325 ORTHO05D008457 2.5e-69 265.8 178 66.3
Sed0000838 Sechium edule HOM05D005325 ORTHO05D008457 2.5e-69 265.8 176 68.2
CsaV3_6G016370 Cucumis sativus L. HOM05D005325 ORTHO05D008457 3.2e-69 265.4 176 68.2
CARHR122960 Cardamine hirsuta HOM05D005325 ORTHO05D008457 4.2e-69 265.0 172 68.0
Nn2g11401 Nelumbo nucifera HOM05D005325 ORTHO05D008457 4.2e-69 265.0 176 66.5
Ciclev10029368m.g Citrus clementina HOM05D005325 ORTHO05D008457 9.3e-69 263.8 179 67.6
Sabra16G0151500 Salix brachista HOM05D005325 ORTHO05D008457 2.7e-68 262.3 179 65.4
Hund04885 Selenicereus undatus HOM05D005325 ORTHO05D008457 3.6e-68 261.9 177 65.0
Gohir.D05G090700 Gossypium hirsutum HOM05D005325 ORTHO05D008457 1.8e-67 259.6 172 67.4
Gorai.009G093200 Gossypium raimondii HOM05D005325 ORTHO05D008457 1.8e-67 259.6 172 66.9
Rhsim13G0071900 Rhododendron simsii HOM05D005325 ORTHO05D008457 1.8e-67 259.6 177 65.0
MSTRG.18491 Avicennia marina HOM05D005325 ORTHO05D008457 2.3e-67 259.2 176 65.3
Duzib170G0996 Durio zibethinus HOM05D005325 ORTHO05D008457 3.0e-67 258.8 175 64.6
Gohir.A05G089800 Gossypium hirsutum HOM05D005325 ORTHO05D008457 3.9e-67 258.5 175 65.7
Cpa.g.sc112.50 Carica papaya HOM05D005325 ORTHO05D008457 6.7e-67 257.7 181 63.0
Migut.D00728 Erythranthe guttata HOM05D005325 ORTHO05D008457 6.7e-67 257.7 170 67.1
Potri.001G249400 Populus trichocarpa HOM05D005325 ORTHO05D008457 6.7e-67 257.7 179 63.1
vmacro02986 Vaccinium macrocarpon HOM05D005325 ORTHO05D008457 8.7e-67 257.3 172 67.4
Sp4g12350 Schrenkiella parvula HOM05D005325 ORTHO05D008457 1.1e-66 256.9 170 66.5
CSS0007520 Camellia sinensis var. sinensis HOM05D005325 ORTHO05D008457 1.5e-66 256.5 176 64.8
CSS0011737 Camellia sinensis var. sinensis HOM05D005325 ORTHO05D008457 1.5e-66 256.5 176 64.8
GSVIVG01024786001 Vitis vinifera HOM05D005325 ORTHO05D008457 1.5e-66 256.5 177 63.8
PGR119G0476 Punica granatum HOM05D005325 ORTHO05D008457 1.9e-66 256.1 171 65.5
Carub.0004s1073 Capsella rubella HOM05D005325 ORTHO05D008457 2.5e-66 255.8 173 66.5
TWI31G1198 Tripterygium wilfordii HOM05D005325 ORTHO05D008457 2.5e-66 255.8 175 66.3
Manes.02G121500 Manihot esculenta HOM05D005325 ORTHO05D008457 3.3e-66 255.4 183 62.3
Dinv28619 Davidia involucrata HOM05D005325 ORTHO05D008457 4.3e-66 255.0 178 61.8
Aa31LG5G6860 Aethionema arabicum HOM05D005325 ORTHO05D008457 1.3e-65 253.4 172 65.1
BcaB02g10271 Brassica carinata HOM05D005325 ORTHO05D008457 1.6e-65 253.1 173 65.3
Sopen09g014710 Solanum pennellii HOM05D005325 ORTHO05D008457 1.6e-65 253.1 174 63.8
Oeu019913.1 Olea europaea HOM05D005325 ORTHO05D008457 2.8e-65 252.3 175 62.3
Actinidia25148 Actinidia chinensis HOM05D005325 ORTHO05D008457 3.7e-65 251.9 176 62.5
BcaC02g11048 Brassica carinata HOM05D005325 ORTHO05D008457 3.7e-65 251.9 173 64.7
AUR62001679 Chenopodium quinoa HOM05D005325 ORTHO05D008457 8.2e-65 250.8 179 61.5
CANSAT54G0458 Cannabis sativa HOM05D005325 ORTHO05D008457 1.4e-64 250.0 181 62.4
AL4G24390 Arabidopsis lyrata HOM05D005325 ORTHO05D008457 2.4e-64 249.2 173 64.2
Thhalv10017013m.g Eutrema salsugineum HOM05D005325 ORTHO05D008457 2.4e-64 249.2 164 65.9
BolC4t23643H Brassica oleracea HOM05D005325 ORTHO05D008457 3.1e-64 248.8 171 64.3
SGA_v2.0_scaffold8G04497 Striga asiatica HOM05D005325 ORTHO05D008457 4.1e-64 248.4 177 62.1
Solyc09g031770.3 Solanum lycopersicum HOM05D005325 ORTHO05D008457 6.9e-64 247.7 174 62.1
AUR62020101 Chenopodium quinoa HOM05D005325 ORTHO05D008457 9.1e-64 247.3 179 61.5
Eucgr.J01937 Eucalyptus grandis HOM05D005325 ORTHO05D008457 9.1e-64 247.3 173 63.0
Cc01_g13970 Coffea canephora HOM05D005325 ORTHO05D008457 1.2e-63 246.9 177 61.0
CAN.G700.24 Capsicum annuum HOM05D005325 ORTHO05D008457 3.4e-63 245.4 177 61.0
DCAR_007389 Daucus carota HOM05D005325 ORTHO05D008457 4.5e-63 245.0 177 61.6
BcaB06g28320 Brassica carinata HOM05D005325 ORTHO05D008457 1.0e-62 243.8 171 64.3
Nitab4.5_0000408g0140 Nicotiana tabacum HOM05D005325 ORTHO05D008457 1.0e-62 243.8 174 62.6
Os03g0265200 Oryza sativa ssp. japonica HOM05D005325 ORTHO05D008457 1.0e-62 243.8 176 60.2
C04p21170 Brassica napus HOM05D005325 ORTHO05D008457 5.0e-62 241.5 173 63.0
BolC4t27390H Brassica oleracea HOM05D005325 ORTHO05D008457 1.4e-61 240.0 169 63.9
MBI14_g04425_MAGBIO Magnolia biondii HOM05D005325 ORTHO05D008457 1.4e-61 240.0 172 62.8
A04p22570 Brassica napus HOM05D005325 ORTHO05D008457 2.5e-61 239.2 172 62.2
A05p15750 Brassica napus HOM05D005325 ORTHO05D008457 2.5e-61 239.2 168 64.3
PGSC0003DMG400020866 Solanum tuberosum HOM05D005325 ORTHO05D008457 2.5e-61 239.2 176 60.2
Zm00001eb011730 Zea mays HOM05D005325 ORTHO05D008457 2.5e-61 239.2 172 59.9
Aqoxy4G02653 Aquilegia oxysepala HOM05D005325 ORTHO05D008457 3.2e-61 238.8 176 60.2
PSO339G0931 Papaver somniferum HOM05D005325 ORTHO05D008457 3.2e-61 238.8 180 60.0
PSO384G1123 Papaver somniferum HOM05D005325 ORTHO05D008457 3.2e-61 238.8 180 60.0
BraA05t20490Z Brassica rapa HOM05D005325 ORTHO05D008457 4.2e-61 238.4 168 63.7
Sc12g0000890 Simmondsia chinensis HOM05D005325 ORTHO05D008457 4.2e-61 238.4 176 61.4
Ah.08g220810 Amaranthus hybridus HOM05D005325 ORTHO05D008457 9.4e-61 237.3 176 61.4
Peaxi162Scf00116g00163 Petunia axillaris HOM05D005325 ORTHO05D008457 1.2e-60 236.9 179 58.1
AT2G29640 Arabidopsis thaliana HOM05D005325 ORTHO05D008457 3.6e-60 235.3 163 65.0
BcaC02g08075 Brassica carinata HOM05D005325 ORTHO05D008457 1.4e-59 233.4 170 62.9
FAN21G2059 Fragaria x ananassa HOM05D005325 ORTHO05D008457 2.3e-59 232.6 146 71.9
ECA248G3745 Erigeron canadensis HOM05D005325 ORTHO05D008457 5.1e-59 231.5 174 61.5
BraA04t17802Z Brassica rapa HOM05D005325 ORTHO05D008457 1.1e-58 230.3 164 62.8
Duzib168G2216 Durio zibethinus HOM05D005325 ORTHO05D008457 1.1e-58 230.3 168 61.9
Lsat_1_v5_gn_5_172281 Lactuca sativa HOM05D005325 ORTHO05D008457 1.5e-58 229.9 177 57.6
FAN16G2295 Fragaria x ananassa HOM05D005325 ORTHO05D008457 3.3e-58 228.8 154 66.2
unitig_62.g23862 Utricularia gibba HOM05D005325 ORTHO05D008457 1.7e-57 226.5 178 59.0
unitig_64.g29774 Utricularia gibba HOM05D005325 ORTHO05D008457 1.7e-57 226.5 178 59.0
EL10Ac7g16130 Beta vulgaris HOM05D005325 ORTHO05D008457 5.3e-56 221.5 174 57.5
Lj1P141T46 Lonicera japonica HOM05D005325 ORTHO05D008457 1.4e-53 213.4 155 60.0
TAR636G1969 Trochodendron aralioides HOM05D005325 ORTHO05D008457 1.9e-53 213.0 154 61.0
ATR0618G365 Amborella trichopoda HOM05D005325 ORTHO05D008457 4.2e-53 211.8 168 57.1
Nitab4.5_0006983g0030 Nicotiana tabacum HOM05D005325 ORTHO05D008457 5.5e-53 211.5 150 63.3
HPP92_015197 Vanilla planifolia HOM05D005325 ORTHO05D008457 4.4e-50 201.8 157 56.1
TAR633G2421 Trochodendron aralioides HOM05D005325 ORTHO05D008457 2.8e-49 199.1 152 59.2
SHI11316 Sapria himalayana HOM05D005325 ORTHO05D008457 1.1e-48 197.2 174 52.9
AagrBONN_evm.TU.Sc2ySwM_362.267 Anthoceros agrestis HOM05D005325 ORTHO05D008457 2.9e-46 189.1 177 49.7
Mapoly0026s0005 Marchantia polymorpha HOM05D005325 ORTHO05D008457 3.8e-46 188.7 175 48.6
Thhalv10017876m.g Eutrema salsugineum HOM05D005325 ORTHO05D008457 8.8e-43 177.6 132 59.8
C04p58710 Brassica napus HOM05D005325 ORTHO05D008457 1.2e-42 177.2 122 63.1
AagrBONN_evm.TU.Sc2ySwM_362.272 Anthoceros agrestis HOM05D005325 ORTHO05D008457 6.3e-41 171.4 181 45.9
Pp3c13_16720 Physcomitrium patens HOM05D005325 ORTHO05D008457 8.2e-41 171.0 178 42.7
SMO351G0628 Selaginella moellendorffii HOM05D005325 ORTHO05D008457 2.5e-37 159.5 176 43.2
CDE10G0077 Ceratophyllum demersum HOM05D000561 ORTHO05D000514 3.0e-35 152.5 115 60.9
MBI14_g39232_MAGBIO Magnolia biondii HOM05D005325 ORTHO05D008457 3.1e-24 115.9 127 48.0
Cre03.g146707 Chlamydomonas reinhardtii HOM05D005325 ORTHO05D008457 1.5e-21 107.1 164 39.6
Haze_27525 Corylus avellana HOM05D005325 ORTHO05D008457 9.5e-21 104.4 171 33.9
ClCG06G015800 Citrullus lanatus HOM05D005325 ORTHO05D008457 1.8e-19 100.1 149 36.2
Atru.chr3.4243 Acer truncatum HOM05D005325 ORTHO05D008457 5.7e-18 95.1 72 61.1
Aa31LG5G6850 Aethionema arabicum HOM05D005325 ORTHO05D008457 4.1e-16 89.0 60 60.0
Lsat_1_v5_gn_9_104180 Lactuca sativa HOM05D005325 ORTHO05D024237 8.0e-12 74.7 94 42.6
BcaB01g00216 Brassica carinata HOM05D005750 ORTHO05D007126 1.3e-09 67.4 175 28.6
A09p47130 Brassica napus HOM05D005750 ORTHO05D007126 1.3e-09 67.4 175 28.6
BraA09t40175Z Brassica rapa HOM05D005750 ORTHO05D007126 1.3e-09 67.4 175 28.6
Thhalv10010608m.g Eutrema salsugineum HOM05D005750 ORTHO05D007126 1.3e-09 67.4 175 29.1
AL5G35150 Arabidopsis lyrata HOM05D005750 ORTHO05D007126 4.9e-09 65.5 175 28.6
AT3G54130 Arabidopsis thaliana HOM05D005750 ORTHO05D007126 6.4e-09 65.1 175 28.6
C08p29390 Brassica napus HOM05D005750 ORTHO05D007126 6.4e-09 65.1 175 28.0
BolC8t50540H Brassica oleracea HOM05D005750 ORTHO05D007126 6.4e-09 65.1 175 28.0
Gohir.A01G224900 Gossypium hirsutum HOM05D005750 ORTHO05D007126 7.0e-08 61.6 175 29.1
Gohir.D01G214500 Gossypium hirsutum HOM05D005750 ORTHO05D007126 7.0e-08 61.6 175 29.1
Gorai.002G260600 Gossypium raimondii HOM05D005750 ORTHO05D007126 7.0e-08 61.6 175 29.1
Cpa.g.sc56.104 Carica papaya HOM05D005750 ORTHO05D007126 9.2e-08 61.2 177 28.2
Carub.0005s2072 Capsella rubella HOM05D005750 ORTHO05D007126 1.2e-07 60.8 179 29.1
CARHR164010 Cardamine hirsuta HOM05D005750 ORTHO05D007126 2.0e-07 60.1 175 27.4
Duzib093G0788 Durio zibethinus HOM05D005750 ORTHO05D007126 2.0e-07 60.1 174 27.0
SGA_v2.0_scaffold240G44116 Striga asiatica HOM05D005750 ORTHO05D007126 2.0e-07 60.1 174 28.2
CBR_g865 Chara braunii HOM05D005750 ORTHO05D007126 2.7e-07 59.7 149 30.2
Glyma.01G110900 Glycine max HOM05D005750 ORTHO05D007126 4.6e-07 58.9 142 28.9
Thecc.05G023200 Theobroma cacao HOM05D005750 ORTHO05D007126 4.6e-07 58.9 172 28.5
Ah.11g045300 Amaranthus hybridus HOM05D005750 ORTHO05D007126 6.0e-07 58.5 175 27.4
CDE02G4717 Ceratophyllum demersum HOM05D005750 ORTHO05D007126 6.0e-07 58.5 174 27.0
Phvul.010G008000 Phaseolus vulgaris HOM05D005750 ORTHO05D007126 6.0e-07 58.5 142 28.9
VMungo0331G1407 Vigna mungo HOM05D005750 ORTHO05D007126 7.8e-07 58.2 142 28.9
FAN02G3889 Fragaria x ananassa HOM05D005750 ORTHO05D007126 1.0e-06 57.8 179 27.4
unitig_46.g18409 Utricularia gibba HOM05D005750 ORTHO05D007126 1.0e-06 57.8 174 28.2
Psat7g247000 Pisum sativum HOM05D005750 ORTHO05D007126 1.3e-06 57.4 172 27.9
Duzib128G1738 Durio zibethinus HOM05D005750 ORTHO05D007126 1.7e-06 57.0 175 28.0
Atru.chr8.2137 Acer truncatum HOM05D005750 ORTHO05D007126 2.3e-06 56.6 175 28.6
FvH4_6g12170 Fragaria vesca HOM05D005750 ORTHO05D007126 2.3e-06 56.6 178 28.1
FAN09G4178 Fragaria x ananassa HOM05D005750 ORTHO05D007126 2.3e-06 56.6 178 28.1
FAN14G0046 Fragaria x ananassa HOM05D005750 ORTHO05D007126 2.3e-06 56.6 178 28.1
FAN14G1750 Fragaria x ananassa HOM05D005750 ORTHO05D007126 2.3e-06 56.6 178 28.1
Potri.016G110300 Populus trichocarpa HOM05D005750 ORTHO05D007126 2.3e-06 56.6 174 26.4
arahy.Tifrunner.gnm1.ann1.2Q187C Arachis hypogaea HOM05D005750 ORTHO05D007126 3.9e-06 55.8 145 29.0
Peaxi162Scf00014g00091 Petunia axillaris HOM05D005750 ORTHO05D007126 3.9e-06 55.8 143 28.7
TAR636G2178 Trochodendron aralioides HOM05D005750 ORTHO05D007126 3.9e-06 55.8 148 29.1
Sopen10g036170 Solanum pennellii HOM05D005750 ORTHO05D007126 5.0e-06 55.5 143 28.0
CAN.G351.8 Capsicum annuum HOM05D005750 ORTHO05D007126 6.6e-06 55.1 143 28.7
RcHm_v2.0_Chr3g0463971 Rosa chinensis HOM05D005750 ORTHO05D007126 6.6e-06 55.1 178 27.0
arahy.Tifrunner.gnm1.ann1.CU0EG8 Arachis hypogaea HOM05D005750 ORTHO05D007126 8.6e-06 54.7 145 29.0
Lalb_Chr07g0193351 Lupinus albus HOM05D005750 ORTHO05D007126 8.6e-06 54.7 145 29.0
Potri.006G095700 Populus trichocarpa HOM05D005750 ORTHO05D007126 8.6e-06 54.7 148 28.4


User provided reference genes

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