Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G258300 Phaseolus vulgaris HOM05D002744 ORTHO05D006546 2.9e-178 628.6 360 100.0
VMungo0647G1938 Vigna mungo HOM05D002744 ORTHO05D006546 1.2e-168 596.7 358 92.7
Glyma.14G196400 Glycine max HOM05D002744 ORTHO05D006546 4.3e-158 561.6 360 84.2
Glyma.02G230100 Glycine max HOM05D002744 ORTHO05D006546 1.8e-156 556.2 362 81.8
Ca_06017_v3 Cicer arietinum L. HOM05D002744 ORTHO05D006546 3.1e-140 502.3 364 73.9
Psat0s1511g0040 Pisum sativum HOM05D002744 ORTHO05D006546 7.7e-139 497.7 359 74.7
Lalb_Chr17g0336941 Lupinus albus HOM05D002744 ORTHO05D006546 9.4e-137 490.7 362 72.1
LjContig00357g0012394 Lotus japonicus HOM05D002744 ORTHO05D006546 4.1e-132 475.3 364 72.0
Lj1g0011333 Lotus japonicus HOM05D002744 ORTHO05D006546 1.6e-128 463.4 379 69.4
Dinv21810 Davidia involucrata HOM05D002744 ORTHO05D006546 4.0e-127 458.8 361 67.0
QL08p064289 Quercus lobata HOM05D002744 ORTHO05D006546 9.8e-126 454.1 355 69.3
Hma1.2p1_1240F.1_g269620 Hydrangea macrophylla HOM05D002744 ORTHO05D006546 6.3e-125 451.4 357 66.4
CiPaw.02G197400 Carya illinoinensis HOM05D002744 ORTHO05D006546 4.1e-124 448.7 359 65.7
ClCG07G004810 Citrullus lanatus HOM05D002744 ORTHO05D006546 4.5e-123 445.3 358 66.2
ClCG00G004700 Citrullus lanatus HOM05D002744 ORTHO05D006546 7.7e-123 444.5 358 66.8
ClCG06G010230 Citrullus lanatus HOM05D002744 ORTHO05D006546 7.7e-123 444.5 358 66.8
Cc02_g05710 Coffea canephora HOM05D002744 ORTHO05D006546 1.3e-122 443.7 361 65.7
Prupe.2G259600 Prunus persica HOM05D002744 ORTHO05D006546 1.7e-122 443.4 357 66.4
MELO3C020109.2 Cucumis melo HOM05D002744 ORTHO05D006546 2.9e-122 442.6 361 65.7
TPR.G14721 Trifolium pratense HOM05D002744 ORTHO05D006546 2.9e-122 442.6 363 71.6
MD07G1229400 Malus domestica HOM05D002744 ORTHO05D006546 6.5e-122 441.4 357 66.9
RcHm_v2.0_Chr1g0371491 Rosa chinensis HOM05D002744 ORTHO05D006546 1.5e-121 440.3 355 66.5
CSS0032617 Camellia sinensis var. sinensis HOM05D002744 ORTHO05D006546 2.5e-121 439.5 361 64.8
CsaV3_5G010730 Cucumis sativus L. HOM05D002744 ORTHO05D006546 4.2e-121 438.7 358 66.2
Sed0016960 Sechium edule HOM05D002744 ORTHO05D006546 4.2e-121 438.7 358 67.3
GSVIVG01032722001 Vitis vinifera HOM05D002744 ORTHO05D006546 5.5e-121 438.3 363 64.7
Actinidia00987 Actinidia chinensis HOM05D002744 ORTHO05D006546 9.4e-121 437.6 361 65.4
Nn2g11076 Nelumbo nucifera HOM05D002744 ORTHO05D006546 2.7e-120 436.0 360 63.9
TAR623G1472 Trochodendron aralioides HOM05D002744 ORTHO05D006546 3.6e-120 435.6 357 65.5
Potri.008G075700 Populus trichocarpa HOM05D002744 ORTHO05D006546 4.7e-120 435.3 365 65.2
Rhsim09G0183300 Rhododendron simsii HOM05D002744 ORTHO05D006546 6.1e-120 434.9 379 61.2
MSTRG.5049 Avicennia marina HOM05D002744 ORTHO05D006546 8.0e-120 434.5 365 64.4
vmacro09982 Vaccinium macrocarpon HOM05D002744 ORTHO05D006546 8.0e-120 434.5 380 61.1
FAN10G0428 Fragaria x ananassa HOM05D002744 ORTHO05D006546 3.0e-119 432.6 355 66.2
FAN01G1994 Fragaria x ananassa HOM05D002744 ORTHO05D006546 1.2e-118 430.6 355 65.9
MD01G1161500 Malus domestica HOM05D002744 ORTHO05D006546 2.0e-118 429.9 357 65.3
Haze_17322 Corylus avellana HOM05D002744 ORTHO05D006546 2.2e-117 426.4 381 64.3
DCAR_011892 Daucus carota HOM05D002744 ORTHO05D006546 2.8e-117 426.0 357 64.7
CANSAT56G2377 Cannabis sativa HOM05D002744 ORTHO05D006546 3.7e-117 425.6 354 65.0
PGSC0003DMG400024457 Solanum tuberosum HOM05D002744 ORTHO05D006546 3.7e-117 425.6 361 64.0
Lj1C963G12 Lonicera japonica HOM05D002744 ORTHO05D006546 4.9e-117 425.2 361 64.8
FvH4_7g25510 Fragaria vesca HOM05D002744 ORTHO05D006546 1.1e-116 424.1 355 64.8
Manes.07G139400 Manihot esculenta HOM05D002744 ORTHO05D006546 3.1e-116 422.5 367 63.5
Nitab4.5_0000928g0070 Nicotiana tabacum HOM05D002744 ORTHO05D006546 4.1e-116 422.2 358 63.7
Lsat_1_v5_gn_2_125961 Lactuca sativa HOM05D002744 ORTHO05D006546 9.1e-116 421.0 355 66.2
PGR044G1552 Punica granatum HOM05D002744 ORTHO05D006546 1.6e-115 420.2 362 64.6
Eucgr.J00153 Eucalyptus grandis HOM05D002744 ORTHO05D006546 2.7e-115 419.5 359 65.7
MBI16_g02735_MAGBIO Magnolia biondii HOM05D002744 ORTHO05D006546 7.7e-115 417.9 359 61.6
FAN03G1008 Fragaria x ananassa HOM05D002744 ORTHO05D006546 1.3e-114 417.2 372 62.6
arahy.Tifrunner.gnm1.ann1.T368MT Arachis hypogaea HOM05D002744 ORTHO05D006546 2.3e-114 416.4 357 68.9
SGA_v2.0_scaffold5G02937 Striga asiatica HOM05D000129 ORTHO05D000144 1.1e-113 414.1 363 62.0
Medtr5g083780 Medicago truncatula HOM05D002744 ORTHO05D006546 1.5e-113 413.7 366 68.0
FAN06G0491 Fragaria x ananassa HOM05D002744 ORTHO05D006546 2.5e-113 412.9 372 61.8
Ciclev10031901m.g Citrus clementina HOM05D002744 ORTHO05D006546 3.3e-113 412.5 363 63.6
Sopen02g017560 Solanum pennellii HOM05D002744 ORTHO05D006546 9.5e-113 411.0 361 63.2
arahy.Tifrunner.gnm1.ann1.G9S3DZ Arachis hypogaea HOM05D002744 ORTHO05D006546 1.6e-112 410.2 357 67.8
Solyc02g068420.4 Solanum lycopersicum HOM05D002744 ORTHO05D006546 1.6e-112 410.2 361 63.2
PGSC0003DMG400009431 Solanum tuberosum HOM05D002744 ORTHO05D006546 1.6e-112 410.2 361 63.2
CDE04G1223 Ceratophyllum demersum HOM05D002744 ORTHO05D006546 3.6e-112 409.1 360 60.6
Nitab4.5_0000263g0070 Nicotiana tabacum HOM05D002744 ORTHO05D006546 3.6e-112 409.1 391 58.6
Migut.N01809 Erythranthe guttata HOM05D002744 ORTHO05D006546 4.7e-112 408.7 366 61.2
Duzib106G0255 Durio zibethinus HOM05D002744 ORTHO05D006546 6.1e-112 408.3 362 61.6
HanXRQChr10g0309081 Helianthus annuus HOM05D002744 ORTHO05D006546 6.8e-111 404.8 355 62.0
HanXRQChr07g0186551 Helianthus annuus HOM05D002744 ORTHO05D006546 1.5e-110 403.7 360 64.7
Gohir.A10G240800 Gossypium hirsutum HOM05D002744 ORTHO05D006546 1.3e-109 400.6 361 61.8
Gorai.011G293300 Gossypium raimondii HOM05D002744 ORTHO05D006546 1.7e-109 400.2 361 59.8
Actinidia07807 Actinidia chinensis HOM05D002744 ORTHO05D006546 2.2e-109 399.8 360 59.7
Gohir.D10G253000 Gossypium hirsutum HOM05D002744 ORTHO05D006546 2.2e-109 399.8 361 59.6
Thecc.10G007000 Theobroma cacao HOM05D002744 ORTHO05D006546 6.3e-109 398.3 362 60.8
PSO210G7497 Papaver somniferum HOM05D002744 ORTHO05D006546 8.3e-109 397.9 377 58.9
PSO832G1082 Papaver somniferum HOM05D002744 ORTHO05D006546 1.4e-108 397.1 377 59.2
ECA238G3482 Erigeron canadensis HOM05D002744 ORTHO05D006546 3.2e-108 396.0 358 62.3
Aqoxy2G00754 Aquilegia oxysepala HOM05D002744 ORTHO05D006546 4.1e-108 395.6 364 61.5
THA.LOC104824347 Tarenaya hassleriana HOM05D002744 ORTHO05D006546 2.3e-106 389.8 361 60.7
Sabra08G0056300 Salix brachista HOM05D002744 ORTHO05D006546 2.9e-106 389.4 426 53.1
HPP92_001733 Vanilla planifolia HOM05D002744 ORTHO05D006546 1.1e-105 387.5 363 59.8
CSS0017108 Camellia sinensis var. sinensis HOM05D002744 ORTHO05D006546 2.1e-104 383.3 361 58.7
Peaxi162Scf00284g00133 Petunia axillaris HOM05D002744 ORTHO05D006546 2.8e-104 382.9 358 59.8
THA.LOC104814944 Tarenaya hassleriana HOM05D002744 ORTHO05D006546 6.1e-104 381.7 373 59.0
Hund13511 Selenicereus undatus HOM05D002744 ORTHO05D006546 1.0e-103 380.9 363 58.4
Sc10g0002810 Simmondsia chinensis HOM05D002744 ORTHO05D006546 5.2e-103 378.6 363 58.7
Ah.05g176210 Amaranthus hybridus HOM05D002744 ORTHO05D006546 6.8e-103 378.3 361 58.7
Aa31LG5G19130 Aethionema arabicum HOM05D002744 ORTHO05D006546 5.4e-100 368.6 370 56.8
Sp4g22770 Schrenkiella parvula HOM05D002744 ORTHO05D006546 9.2e-100 367.9 382 57.1
EL10Ac2g04290 Beta vulgaris HOM05D002744 ORTHO05D006546 1.2e-99 367.5 356 57.9
CARHR135540 Cardamine hirsuta HOM05D002744 ORTHO05D006546 1.6e-99 367.1 365 58.1
COL.COLO4_25825 Corchorus olitorius HOM05D002744 ORTHO05D006546 1.6e-99 367.1 340 62.4
Os05g0144200 Oryza sativa ssp. japonica HOM05D002744 ORTHO05D006546 2.7e-99 366.3 382 54.2
SalBow1G3835 Salvia bowleyana HOM05D002744 ORTHO05D006546 4.6e-99 365.5 343 65.6
Thhalv10016839m.g Eutrema salsugineum HOM05D002744 ORTHO05D006546 6.6e-98 361.7 365 57.3
AUR62012335 Chenopodium quinoa HOM05D002744 ORTHO05D006546 1.1e-97 360.9 370 57.8
Carub.0004s2268 Capsella rubella HOM05D002744 ORTHO05D006546 1.6e-96 357.1 380 55.5
AL4G38260 Arabidopsis lyrata HOM05D002744 ORTHO05D006546 3.1e-95 352.8 429 49.0
AUR62022979 Chenopodium quinoa HOM05D002744 ORTHO05D006546 4.0e-95 352.4 372 55.9
SalBow8G4474 Salvia bowleyana HOM05D002744 ORTHO05D006546 1.3e-93 347.4 363 61.2
SalBow8G2269 Salvia bowleyana HOM05D002744 ORTHO05D006546 2.2e-93 346.7 363 61.2
ATR1127G109 Amborella trichopoda HOM05D002744 ORTHO05D006546 3.7e-93 345.9 339 59.3
BcaC02g12712 Brassica carinata HOM05D002744 ORTHO05D006546 8.3e-93 344.7 380 54.2
BcaB06g29140 Brassica carinata HOM05D002744 ORTHO05D006546 1.4e-92 344.0 385 54.0
TWI56G0434 Tripterygium wilfordii HOM05D002744 ORTHO05D006546 2.4e-92 343.2 364 57.1
SEGI_20256 Sequoiadendron giganteum HOM05D002744 ORTHO05D006546 1.2e-91 340.9 364 51.9
Zm00001eb417890 Zea mays HOM05D002744 ORTHO05D006546 2.7e-91 339.7 387 50.6
A05p01680 Brassica napus HOM05D002744 ORTHO05D006546 1.0e-90 337.8 379 53.6
BraA05t19165Z Brassica rapa HOM05D002744 ORTHO05D006546 1.0e-90 337.8 379 53.6
BraA04t18540Z Brassica rapa HOM05D002744 ORTHO05D006546 5.2e-87 325.5 378 54.0
C04p68230 Brassica napus HOM05D002744 ORTHO05D006546 1.1e-84 317.8 378 51.6
BolC4t28327H Brassica oleracea HOM05D002744 ORTHO05D006546 1.1e-84 317.8 378 51.6
A04p30810 Brassica napus HOM05D002744 ORTHO05D006546 1.9e-84 317.0 378 52.9
CDE03G0451 Ceratophyllum demersum HOM05D002744 ORTHO05D006546 2.1e-83 313.5 360 51.7
BolC4t21844H Brassica oleracea HOM05D002744 ORTHO05D006546 6.0e-83 312.0 394 49.7
C04p01940 Brassica napus HOM05D002744 ORTHO05D006546 7.8e-83 311.6 394 49.5
BcaC02g07313 Brassica carinata HOM05D002744 ORTHO05D006546 3.9e-82 309.3 380 51.1
unitig_27.g25095 Utricularia gibba HOM05D002744 ORTHO05D006546 6.6e-82 308.5 357 50.4
Ca_27928_v3 Cicer arietinum L. HOM05D002744 ORTHO05D006546 1.6e-80 303.9 278 62.9
Cpa.g.sc19.99 Carica papaya HOM05D002744 ORTHO05D008989 3.3e-73 279.6 304 57.6
Mapoly0001s0132 Marchantia polymorpha HOM05D002744 ORTHO05D006546 4.0e-71 272.7 384 43.5
CAN.G39.17 Capsicum annuum HOM05D002744 ORTHO05D006546 1.5e-70 270.8 212 67.5
Oeu026182.1 Olea europaea HOM05D002744 ORTHO05D006546 1.3e-69 267.7 215 66.0
AT2G40430 Arabidopsis thaliana HOM05D002744 ORTHO05D006546 1.1e-63 248.1 357 44.5
Ca_06977_v3 Cicer arietinum L. HOM05D002744 ORTHO05D006546 2.2e-61 240.4 186 67.7
CBR_g88544 Chara braunii HOM05D002744 ORTHO05D006546 1.6e-56 224.2 431 35.7
AagrBONN_evm.TU.Sc2ySwM_344.2566 Anthoceros agrestis HOM05D002744 ORTHO05D006546 1.9e-52 210.7 339 38.6
SHI18675 Sapria himalayana HOM05D002744 ORTHO05D006546 5.5e-44 182.6 260 44.6
MBI16_g06795_MAGBIO Magnolia biondii HOM05D002744 ORTHO05D018022 3.5e-43 179.9 210 49.5
Pp3c22_7700 Physcomitrium patens HOM05D002744 ORTHO05D006546 1.8e-42 177.6 356 36.8
Solyc06g050820.3 Solanum lycopersicum HOM05D002744 ORTHO05D006546 1.1e-36 158.3 158 59.5
CAN.G39.16 Capsicum annuum HOM05D002744 ORTHO05D006546 7.2e-36 155.6 121 67.8
Oeu017758.1 Olea europaea HOM05D002744 ORTHO05D006546 3.0e-34 150.2 116 63.8
PRCOL_00000452 Prasinoderma coloniale HOM05D002744 ORTHO05D006546 8.0e-19 99.0 401 27.2
AUR62042571 Chenopodium quinoa HOM05D002744 ORTHO05D006546 1.1e-17 95.1 82 57.3
HanXRQChr04g0102991 Helianthus annuus HOM05D002744 ORTHO05D006546 2.6e-17 94.0 67 67.2
MCO01G055 Micromonas commoda HOM05D002744 ORTHO05D006546 3.3e-17 93.6 444 23.0
Atru.chr12.137 Acer truncatum HOM05D002744 ORTHO05D006546 2.2e-16 90.9 56 83.9
Aqoxy466s002 Aquilegia oxysepala HOM05D002744 ORTHO05D006546 4.8e-16 89.7 117 49.6
Cre07.g348250 Chlamydomonas reinhardtii HOM05D002744 ORTHO05D006546 1.3e-13 81.6 251 35.9
SHI18673 Sapria himalayana HOM05D002744 ORTHO05D006546 2.5e-12 77.4 56 69.6
Lsat_1_v5_gn_5_82241 Lactuca sativa HOM05D002744 ORTHO05D006546 3.0e-10 70.5 47 68.1
arahy.Tifrunner.gnm1.ann1.LJQ8FI Arachis hypogaea HOM05D002744 ORTHO05D006546 8.8e-10 68.9 65 63.1
arahy.Tifrunner.gnm1.ann1.WF3XAB Arachis hypogaea HOM05D002744 ORTHO05D006546 1.3e-08 65.1 50 74.0
arahy.Tifrunner.gnm1.ann1.XR4RRM Arachis hypogaea HOM05D002744 ORTHO05D006546 3.7e-08 63.5 50 72.0
arahy.Tifrunner.gnm1.ann1.U77MTX Arachis hypogaea HOM05D002744 ORTHO05D006546 2.4e-07 60.8 49 71.4


User provided reference genes

Program Settings