Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G209600 Phaseolus vulgaris HOM05D001598 ORTHO05D007192 0.0e+00 1305.0 670 100.0
VMungo0647G2429 Vigna mungo HOM05D001598 ORTHO05D007192 0.0e+00 1189.9 649 93.7
Glyma.02G272700 Glycine max HOM05D001598 ORTHO05D007192 0.0e+00 1154.8 651 91.1
Medtr5g087490 Medicago truncatula HOM05D001598 ORTHO05D007192 0.0e+00 1081.6 653 84.7
TPR.G11692 Trifolium pratense HOM05D001598 ORTHO05D007192 0.0e+00 1078.9 653 85.0
LjContig00564g0017485 Lotus japonicus HOM05D001598 ORTHO05D007192 4.6e-312 1073.5 652 84.2
Lalb_Chr10g0105801 Lupinus albus HOM05D001598 ORTHO05D007192 2.6e-305 1051.6 648 82.9
arahy.Tifrunner.gnm1.ann1.4UW9RQ Arachis hypogaea HOM05D001598 ORTHO05D007192 2.0e-289 998.8 691 75.8
arahy.Tifrunner.gnm1.ann1.IS34PQ Arachis hypogaea HOM05D001598 ORTHO05D007192 1.3e-288 996.1 691 75.8
Psat2g023160 Pisum sativum HOM05D001598 ORTHO05D007192 4.9e-288 994.2 602 84.4
TAR375G0698 Trochodendron aralioides HOM05D001598 ORTHO05D007192 4.7e-275 951.0 653 74.1
Dinv32128 Davidia involucrata HOM05D001598 ORTHO05D007192 3.2e-271 938.3 654 72.9
Potri.009G156400 Populus trichocarpa HOM05D001598 ORTHO05D007192 5.4e-271 937.6 654 74.3
Gorai.009G080100 Gossypium raimondii HOM05D001598 ORTHO05D007192 6.6e-269 930.6 654 72.8
COL.COLO4_25318 Corchorus olitorius HOM05D001598 ORTHO05D007192 8.6e-269 930.2 656 73.0
CiPaw.13G127200 Carya illinoinensis HOM05D001598 ORTHO05D007192 3.3e-268 928.3 655 72.8
CSS0038227 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D007192 4.3e-268 927.9 654 72.2
Gohir.A05G076000 Gossypium hirsutum HOM05D001598 ORTHO05D007192 4.3e-268 927.9 654 72.5
Ciclev10014503m.g Citrus clementina HOM05D001598 ORTHO05D007192 9.6e-268 926.8 654 71.7
Gohir.D05G078700 Gossypium hirsutum HOM05D001598 ORTHO05D007192 8.1e-267 923.7 646 73.1
Eucgr.J00614 Eucalyptus grandis HOM05D001598 ORTHO05D007192 2.4e-266 922.2 654 72.5
Ca_06138_v3 Cicer arietinum L. HOM05D001598 ORTHO05D007192 4.0e-266 921.4 650 75.5
GSVIVG01037501001 Vitis vinifera HOM05D001598 ORTHO05D007192 5.2e-266 921.0 653 72.3
Sabra09G0122500 Salix brachista HOM05D001598 ORTHO05D007192 6.8e-266 920.6 654 72.8
Atru.chr3.2751 Acer truncatum HOM05D001598 ORTHO05D007192 1.5e-265 919.5 654 71.4
AL6G32560 Arabidopsis lyrata HOM05D001598 ORTHO05D007192 4.4e-265 917.9 658 70.4
Rhsim01G0197500 Rhododendron simsii HOM05D001598 ORTHO05D007192 7.6e-265 917.1 654 71.6
DCAR_000741 Daucus carota HOM05D001598 ORTHO05D007192 1.7e-264 916.0 654 71.6
MD11G1181200 Malus domestica HOM05D001598 ORTHO05D007192 1.9e-263 912.5 656 71.3
AT5G20990 Arabidopsis thaliana HOM05D001598 ORTHO05D007192 9.3e-263 910.2 658 69.8
vmacro14297 Vaccinium macrocarpon HOM05D001598 ORTHO05D007192 9.3e-263 910.2 659 70.4
CANSAT54G2824 Cannabis sativa HOM05D001598 ORTHO05D007192 1.2e-262 909.8 656 72.3
TWI31G0930 Tripterygium wilfordii HOM05D001598 ORTHO05D007192 1.6e-262 909.4 655 70.8
RcHm_v2.0_Chr5g0048741 Rosa chinensis HOM05D001598 ORTHO05D007192 1.0e-261 906.7 656 70.3
CARHR191850 Cardamine hirsuta HOM05D001598 ORTHO05D007192 3.0e-261 905.2 644 70.7
BraA03t10351Z Brassica rapa HOM05D001598 ORTHO05D007192 1.9e-260 902.5 660 68.9
A03p10390 Brassica napus HOM05D001598 ORTHO05D007192 2.5e-260 902.1 658 69.5
Carub.0006s1931 Capsella rubella HOM05D001598 ORTHO05D007192 1.3e-259 899.8 659 69.5
AUR62020182 Chenopodium quinoa HOM05D001598 ORTHO05D007192 1.6e-259 899.4 658 70.7
Hma1.2p1_0218F.1_g092460 Hydrangea macrophylla HOM05D001598 ORTHO05D007192 2.1e-259 899.0 644 71.4
BolC3t13663H Brassica oleracea HOM05D001598 ORTHO05D007192 6.2e-259 897.5 660 68.5
Thhalv10012894m.g Eutrema salsugineum HOM05D001598 ORTHO05D007192 4.0e-258 894.8 657 68.9
PGR119G0245 Punica granatum HOM05D001598 ORTHO05D007192 4.0e-258 894.8 654 70.6
Solyc01g009050.3 Solanum lycopersicum HOM05D001598 ORTHO05D007192 8.4e-256 887.1 653 68.8
MELO3C015599.2 Cucumis melo HOM05D001598 ORTHO05D007192 1.1e-255 886.7 654 69.0
CAN.G651.7 Capsicum annuum HOM05D001598 ORTHO05D007192 1.9e-255 885.9 654 68.3
PSO063G3947 Papaver somniferum HOM05D001598 ORTHO05D007192 1.9e-255 885.9 656 69.5
Aqoxy3G02341 Aquilegia oxysepala HOM05D001598 ORTHO05D007192 2.4e-255 885.6 653 68.9
Sopen01g004540 Solanum pennellii HOM05D001598 ORTHO05D007192 2.7e-254 882.1 653 68.3
C03p11930 Brassica napus HOM05D001598 ORTHO05D007192 1.0e-253 880.2 660 68.0
CsaV3_1G041840 Cucumis sativus L. HOM05D001598 ORTHO05D007192 1.3e-253 879.8 654 68.5
Nitab4.5_0002300g0120 Nicotiana tabacum HOM05D001598 ORTHO05D007192 1.9e-252 875.9 643 69.1
Sed0001025 Sechium edule HOM05D001598 ORTHO05D007192 4.3e-252 874.8 648 68.7
Migut.N02410 Erythranthe guttata HOM05D001598 ORTHO05D007192 7.3e-252 874.0 657 68.8
SGA_v2.0_scaffold16G07584 Striga asiatica HOM05D001598 ORTHO05D007192 1.3e-251 873.2 655 68.5
Hund20974 Selenicereus undatus HOM05D001598 ORTHO05D007192 4.8e-251 871.3 654 68.2
EL10Ac7g16239 Beta vulgaris HOM05D001598 ORTHO05D007192 1.2e-249 866.7 691 66.1
SalBow3G4459 Salvia bowleyana HOM05D001598 ORTHO05D007192 4.5e-249 864.8 654 68.0
ClCG03G014390 Citrullus lanatus HOM05D001598 ORTHO05D007192 9.9e-249 863.6 655 68.1
Cc01_g07890 Coffea canephora HOM05D001598 ORTHO05D007192 9.9e-249 863.6 662 66.8
Sp6g23530 Schrenkiella parvula HOM05D001598 ORTHO05D007192 1.3e-248 863.2 658 67.0
Actinidia22467 Actinidia chinensis HOM05D001598 ORTHO05D007192 7.1e-247 857.4 654 68.2
MSTRG.12417 Avicennia marina HOM05D001598 ORTHO05D007192 2.7e-246 855.5 656 68.8
HanXRQChr06g0180651 Helianthus annuus HOM05D001598 ORTHO05D007192 3.5e-246 855.1 644 67.9
Aa31LG1G13740 Aethionema arabicum HOM05D001598 ORTHO05D007192 6.0e-246 854.4 647 66.3
ECA247G1799 Erigeron canadensis HOM05D001598 ORTHO05D007192 1.0e-245 853.6 661 67.0
FAN25G1601 Fragaria x ananassa HOM05D001598 ORTHO05D007192 1.8e-245 852.8 655 67.3
MBI07_g03077_MAGBIO Magnolia biondii HOM05D001598 ORTHO05D007192 4.3e-244 848.2 659 67.2
Lsat_1_v5_gn_2_37520 Lactuca sativa HOM05D001598 ORTHO05D007192 3.7e-243 845.1 645 67.9
FAN21G0325 Fragaria x ananassa HOM05D001598 ORTHO05D007192 6.2e-243 844.3 670 65.5
Manes.11G103300 Manihot esculenta HOM05D001598 ORTHO05D007192 1.1e-242 843.6 590 73.2
FAN11G2542 Fragaria x ananassa HOM05D001598 ORTHO05D007192 4.5e-241 838.2 656 66.2
Zm00001eb432770 Zea mays HOM05D001598 ORTHO05D007192 2.2e-240 835.9 657 65.0
Ah.08g222590 Amaranthus hybridus HOM05D001598 ORTHO05D007192 1.4e-239 833.2 609 70.4
AUR62001598 Chenopodium quinoa HOM05D001598 ORTHO05D007192 8.7e-237 823.9 689 64.6
ATR0215G007 Amborella trichopoda HOM05D001598 ORTHO05D007192 7.4e-236 820.8 666 62.6
unitig_8.g2986 Utricularia gibba HOM05D001598 ORTHO05D007192 9.6e-236 820.5 647 65.2
Haze_23633 Corylus avellana HOM05D001598 ORTHO05D007192 2.8e-235 818.9 723 62.0
Nitab4.5_0000428g0110 Nicotiana tabacum HOM05D001598 ORTHO05D007192 3.4e-233 812.0 643 65.3
Prupe.6G153900 Prunus persica HOM05D001598 ORTHO05D007192 3.2e-231 805.4 584 71.6
Cpa.g.sc34.224 Carica papaya HOM05D001598 ORTHO05D007192 3.0e-229 798.9 615 67.8
Thecc.09G265000 Theobroma cacao HOM05D001598 ORTHO05D007192 1.5e-228 796.6 659 64.5
Sc21g0006570 Simmondsia chinensis HOM05D001598 ORTHO05D007192 9.0e-226 787.3 592 69.8
Oeu051504.1 Olea europaea HOM05D001598 ORTHO05D007192 7.2e-223 777.7 656 64.6
Pp3c14_4050 Physcomitrium patens HOM05D001598 ORTHO05D007192 8.8e-221 770.8 662 61.5
Peaxi162Scf00050g02227 Petunia axillaris HOM05D001598 ORTHO05D007192 1.6e-214 750.0 864 50.9
CDE02G2133 Ceratophyllum demersum HOM05D001598 ORTHO05D007192 6.3e-211 738.0 656 59.6
SMO145G0256 Selaginella moellendorffii HOM05D001598 ORTHO05D007192 3.0e-205 719.2 654 57.3
CDE06G2705 Ceratophyllum demersum HOM05D001598 ORTHO05D007192 2.4e-202 709.5 685 58.0
AagrBONN_evm.TU.Sc2ySwM_228.3025 Anthoceros agrestis HOM05D001598 ORTHO05D007192 9.8e-196 687.6 669 56.4
QL01p007286 Quercus lobata HOM05D001598 ORTHO05D007192 1.0e-192 677.6 846 48.7
HPP92_013469 Vanilla planifolia HOM05D001598 ORTHO05D007192 4.4e-188 662.1 567 61.7
FvH4_3g26260 Fragaria vesca HOM05D001598 ORTHO05D007192 8.3e-187 657.9 508 66.7
CSS0048937 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D007192 3.3e-183 646.0 477 70.0
Lj2C893G11 Lonicera japonica HOM05D001598 ORTHO05D007192 3.4e-172 609.4 476 66.2
Mapoly1495s0001 Marchantia polymorpha HOM05D001598 ORTHO05D007192 4.4e-172 609.0 580 56.4
Atru.ctg664.11 Acer truncatum HOM05D001598 ORTHO05D007192 1.2e-166 590.9 489 64.4
HPP92_013468 Vanilla planifolia HOM05D001598 ORTHO05D007192 1.4e-165 587.4 601 54.6
SEGI_02371 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 1.4e-149 534.3 436 63.5
Lj2A895G19 Lonicera japonica HOM05D001598 ORTHO05D007192 5.1e-128 462.6 435 57.0
Cre10.g451400 Chlamydomonas reinhardtii HOM05D001598 ORTHO05D007192 1.8e-112 411.0 460 50.4
SEGI_00915 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 6.7e-112 409.1 345 62.3
TPR.G11462 Trifolium pratense HOM05D001598 ORTHO05D007192 6.5e-91 339.3 281 67.6
AagrBONN_evm.TU.Sc2ySwM_117.1323 Anthoceros agrestis HOM05D001598 ORTHO05D007192 5.9e-84 316.2 411 46.0
MCO09G295 Micromonas commoda HOM05D001598 ORTHO05D007192 2.6e-79 300.8 433 43.0
SHI25335 Sapria himalayana HOM05D001598 ORTHO05D000001 4.8e-78 296.6 237 62.0
Lj2A895T22 Lonicera japonica HOM05D001598 ORTHO05D007192 2.3e-72 277.7 198 70.7
CSS0046041 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D007192 7.5e-71 272.7 202 68.3
HPP92_013448 Vanilla planifolia HOM05D001598 ORTHO05D007192 1.3e-67 261.9 174 72.4
PRCOL_00000516 Prasinoderma coloniale HOM05D005603 ORTHO05D006944 2.9e-62 244.2 375 42.4
SEGI_37017 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 2.7e-60 237.7 165 68.5
vmacro23059 Vaccinium macrocarpon HOM05D001598 ORTHO05D007192 2.8e-57 227.6 249 54.6
TPR.G24627 Trifolium pratense HOM05D001598 ORTHO05D007192 2.8e-49 201.1 141 76.6
CBR_g53773 Chara braunii HOM05D000019 ORTHO05D000002 1.1e-45 189.1 446 32.5
Nn1g00103 Nelumbo nucifera HOM05D001598 ORTHO05D007192 3.2e-45 187.6 137 65.7
Zm00001eb067470 Zea mays HOM05D001598 ORTHO05D007192 4.3e-42 177.2 168 59.5
CBR_g53784 Chara braunii HOM05D001598 ORTHO05D007192 8.4e-38 162.9 147 58.5
QL01p007301 Quercus lobata HOM05D001598 ORTHO05D007192 7.3e-34 149.8 97 73.2
HanXRQChr07g0205981 Helianthus annuus HOM05D001598 ORTHO05D007192 1.4e-32 145.6 94 74.5
Ca_14173_v3 Cicer arietinum L. HOM05D000092 ORTHO05D005910 6.9e-32 143.3 307 37.8
Nn1g08035 Nelumbo nucifera HOM05D001598 ORTHO05D007192 6.9e-32 143.3 88 73.9
BcaB08g37328 Brassica carinata HOM05D001598 ORTHO05D007192 6.4e-30 136.7 82 78.0
SHI25334 Sapria himalayana HOM05D001598 ORTHO05D000001 1.4e-29 135.6 90 68.9
SEGI_32063 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 1.9e-29 135.2 92 70.7
Lj2C893T10 Lonicera japonica HOM05D001598 ORTHO05D007192 4.2e-29 134.0 79 79.7
TPR.G22712 Trifolium pratense HOM05D001598 ORTHO05D046738 1.3e-27 129.0 92 75.0
Mapoly0056s0125 Marchantia polymorpha HOM05D001598 ORTHO05D007192 2.3e-27 128.3 96 62.5
Ca_02574_v3 Cicer arietinum L. HOM05D000009 ORTHO05D000008 6.6e-27 126.7 84 79.8
Glyma.14G045450 Glycine max HOM05D001598 ORTHO05D007192 1.3e-25 122.5 66 95.5
BcaB08g37330 Brassica carinata HOM05D001598 ORTHO05D007192 2.1e-25 121.7 83 73.5
SGA_v2.0_scaffold6G03251 Striga asiatica HOM05D001598 ORTHO05D007192 6.2e-25 120.2 477 30.6
PRCOL_00002568 Prasinoderma coloniale HOM05D001598 ORTHO05D007192 3.1e-24 117.9 176 39.2
MCO03G199 Micromonas commoda HOM05D001598 ORTHO05D007192 7.6e-23 113.2 169 39.1
BcaC04g19497 Brassica carinata HOM05D001598 ORTHO05D007192 7.9e-20 103.2 90 62.2
Cre06.g282150 Chlamydomonas reinhardtii HOM05D001598 ORTHO05D007192 8.7e-19 99.8 185 35.7
Glyma.16G121250 Glycine max HOM05D001598 ORTHO05D046738 1.9e-18 98.6 75 73.3
TAR374G1328 Trochodendron aralioides HOM05D001598 ORTHO05D007192 1.6e-17 95.5 55 85.5
Sc01g0005570 Simmondsia chinensis HOM05D001598 ORTHO05D007192 5.3e-16 90.5 67 64.2
Os04g0661600 Oryza sativa ssp. japonica HOM05D001598 ORTHO05D007192 8.4e-14 83.2 61 68.9
CBR_g53769 Chara braunii HOM05D000019 ORTHO05D000002 1.2e-12 79.3 62 62.9
Gohir.D02G147550 Gossypium hirsutum HOM05D006828 ORTHO05D008312 2.1e-12 78.6 50 72.0
Gorai.013G167300 Gossypium raimondii HOM05D006828 ORTHO05D008312 2.1e-12 78.6 50 72.0
Gohir.D05G085901 Gossypium hirsutum HOM05D001598 ORTHO05D008312 1.1e-10 72.8 60 58.3
SMO307G0084 Selaginella moellendorffii HOM05D001598 ORTHO05D007192 3.4e-07 61.2 65 44.6
TWI56G1164 Tripterygium wilfordii HOM05D001598 ORTHO05D007192 4.9e-06 57.4 49 59.2


User provided reference genes

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