Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G203400 Phaseolus vulgaris HOM05D004222 ORTHO05D004982 4.4e-95 351.3 177 100.0
VMungo0647G2371 Vigna mungo HOM05D004222 ORTHO05D004982 4.0e-88 328.2 177 93.2
Glyma.17G037200 Glycine max HOM05D004222 ORTHO05D004982 2.0e-76 289.3 179 83.8
Phvul.003G118200 Phaseolus vulgaris HOM05D004222 ORTHO05D004982 2.0e-76 289.3 179 83.8
Glyma.07G236200 Glycine max HOM05D004222 ORTHO05D004982 1.3e-75 286.6 179 84.4
Glyma.02G277500 Glycine max HOM05D004222 ORTHO05D004982 1.2e-73 280.0 182 83.0
arahy.Tifrunner.gnm1.ann1.J7IGQN Arachis hypogaea HOM05D004222 ORTHO05D004982 8.0e-73 277.3 179 79.9
arahy.Tifrunner.gnm1.ann1.M5IJ04 Arachis hypogaea HOM05D004222 ORTHO05D004982 8.0e-73 277.3 179 79.9
Lalb_Chr13g0298711 Lupinus albus HOM05D004222 ORTHO05D004982 1.0e-72 276.9 180 80.6
Lj4g0027352 Lotus japonicus HOM05D004222 ORTHO05D004982 8.9e-72 273.9 178 80.9
Ca_21404_v3 Cicer arietinum L. HOM05D004222 ORTHO05D004982 2.7e-68 262.3 181 77.3
Ca_21419_v3 Cicer arietinum L. HOM05D004222 ORTHO05D004982 2.7e-68 262.3 181 77.3
Medtr3g015130 Medicago truncatula HOM05D004222 ORTHO05D004982 4.6e-68 261.5 181 77.9
VMungo1215G2100 Vigna mungo HOM05D004222 ORTHO05D004982 1.7e-67 259.6 254 59.4
Medtr4g123000 Medicago truncatula HOM05D004222 ORTHO05D004982 1.1e-66 256.9 181 76.2
TPR.G18581 Trifolium pratense HOM05D004222 ORTHO05D004982 1.9e-66 256.1 179 74.3
CiPaw.01G218100 Carya illinoinensis HOM05D004222 ORTHO05D004982 3.1e-64 248.8 178 72.5
Haze_16054 Corylus avellana HOM05D004222 ORTHO05D004982 1.2e-63 246.9 178 73.0
Manes.11G019600 Manihot esculenta HOM05D004222 ORTHO05D004982 3.4e-63 245.4 178 73.6
Thecc.06G121100 Theobroma cacao HOM05D004222 ORTHO05D004982 3.4e-63 245.4 175 72.6
Duzib235G1272 Durio zibethinus HOM05D004222 ORTHO05D004982 4.4e-63 245.0 178 73.6
Manes.04G145400 Manihot esculenta HOM05D004222 ORTHO05D004982 5.8e-63 244.6 178 71.9
Dinv15742 Davidia involucrata HOM05D004222 ORTHO05D004982 7.5e-63 244.2 175 72.0
PGR031G1684 Punica granatum HOM05D004222 ORTHO05D004982 1.3e-62 243.4 178 73.0
TWI31G0208 Tripterygium wilfordii HOM05D004222 ORTHO05D004982 1.7e-62 243.0 172 73.3
Psat0s1953g0320 Pisum sativum HOM05D004222 ORTHO05D004982 3.7e-62 241.9 185 73.5
Rhsim01G0228800 Rhododendron simsii HOM05D004222 ORTHO05D004982 3.7e-62 241.9 175 73.1
Actinidia21792 Actinidia chinensis HOM05D004222 ORTHO05D004982 4.9e-62 241.5 171 73.1
Potri.001G168300 Populus trichocarpa HOM05D004222 ORTHO05D004982 4.9e-62 241.5 178 73.6
Sabra01G0142300 Salix brachista HOM05D004222 ORTHO05D004982 8.3e-62 240.7 178 73.6
TAR383G0284 Trochodendron aralioides HOM05D004222 ORTHO05D004982 1.9e-61 239.6 173 73.4
CSS0031925 Camellia sinensis var. sinensis HOM05D004222 ORTHO05D004982 2.4e-61 239.2 176 73.3
Rhsim08G0239600 Rhododendron simsii HOM05D004222 ORTHO05D004982 3.2e-61 238.8 175 72.0
Cfa003517 Carpinus fangiana HOM05D004222 ORTHO05D004982 7.1e-61 237.7 162 75.3
FvH4_6g34870 Fragaria vesca HOM05D004222 ORTHO05D004982 7.1e-61 237.7 170 72.4
FAN14G1002 Fragaria x ananassa HOM05D004222 ORTHO05D004982 7.1e-61 237.7 170 72.4
vmacro15039 Vaccinium macrocarpon HOM05D004222 ORTHO05D004982 7.1e-61 237.7 175 73.1
Atru.chr1.3997 Acer truncatum HOM05D004222 ORTHO05D004982 9.2e-61 237.3 178 72.5
Eucgr.G03389 Eucalyptus grandis HOM05D004222 ORTHO05D004982 9.2e-61 237.3 177 69.5
FAN09G4904 Fragaria x ananassa HOM05D004222 ORTHO05D004982 1.2e-60 236.9 170 72.9
RcHm_v2.0_Chr2g0145741 Rosa chinensis HOM05D004222 ORTHO05D004982 1.2e-60 236.9 178 69.1
CiPaw.02G135300 Carya illinoinensis HOM05D004222 ORTHO05D004982 1.6e-60 236.5 178 73.0
FAN02G1508 Fragaria x ananassa HOM05D004222 ORTHO05D004982 1.6e-60 236.5 170 72.4
ClCG09G000990 Citrullus lanatus HOM05D004222 ORTHO05D004982 2.1e-60 236.1 173 71.7
vmacro16353 Vaccinium macrocarpon HOM05D004222 ORTHO05D004982 2.1e-60 236.1 175 72.6
MELO3C024352.2 Cucumis melo HOM05D004222 ORTHO05D004982 2.7e-60 235.7 180 68.3
Gorai.011G059100 Gossypium raimondii HOM05D004222 ORTHO05D004982 2.7e-60 235.7 178 71.9
Ciclev10032895m.g Citrus clementina HOM05D004222 ORTHO05D004982 3.5e-60 235.3 178 70.8
TWI75G1350 Tripterygium wilfordii HOM05D004222 ORTHO05D004982 3.5e-60 235.3 172 71.5
BolC3t21520H Brassica oleracea HOM05D004222 ORTHO05D004982 4.6e-60 235.0 181 70.2
Cc02_g29210 Coffea canephora HOM05D004222 ORTHO05D004982 4.6e-60 235.0 181 70.7
Dinv37865 Davidia involucrata HOM05D004222 ORTHO05D004982 4.6e-60 235.0 168 72.0
QL05p004213 Quercus lobata HOM05D004222 ORTHO05D004982 4.6e-60 235.0 179 71.5
Gohir.A10G053600 Gossypium hirsutum HOM05D004222 ORTHO05D004982 6.0e-60 234.6 178 70.8
TAR626G0656 Trochodendron aralioides HOM05D004222 ORTHO05D004982 6.0e-60 234.6 169 72.8
Sp1g40590 Schrenkiella parvula HOM05D004222 ORTHO05D004982 1.0e-59 233.8 183 69.4
BcaC01g01437 Brassica carinata HOM05D004222 ORTHO05D004982 1.3e-59 233.4 181 69.6
A08p01190 Brassica napus HOM05D004222 ORTHO05D004982 1.3e-59 233.4 181 69.6
C03p92020 Brassica napus HOM05D004222 ORTHO05D004982 1.3e-59 233.4 181 69.6
BraA08t32170Z Brassica rapa HOM05D004222 ORTHO05D004982 1.3e-59 233.4 181 69.6
CsaV3_7G034430 Cucumis sativus L. HOM05D004222 ORTHO05D004982 1.3e-59 233.4 180 67.8
Eucgr.H02488 Eucalyptus grandis HOM05D004222 ORTHO05D004982 1.7e-59 233.0 177 68.9
Gohir.D10G055400 Gossypium hirsutum HOM05D004222 ORTHO05D004982 2.3e-59 232.6 178 71.3
Nn2g10347 Nelumbo nucifera HOM05D004222 ORTHO05D004982 2.3e-59 232.6 164 73.2
COL.COLO4_30749 Corchorus olitorius HOM05D004222 ORTHO05D004982 3.9e-59 231.9 178 71.3
Hma1.2p1_0074F.1_g038830 Hydrangea macrophylla HOM05D004222 ORTHO05D004982 5.1e-59 231.5 174 70.7
Hma1.2p1_3000F.1_g331525 Hydrangea macrophylla HOM05D004222 ORTHO05D004982 5.1e-59 231.5 174 70.7
Sc16g0009040 Simmondsia chinensis HOM05D004222 ORTHO05D004982 8.6e-59 230.7 174 70.7
BcaB04g17022 Brassica carinata HOM05D004222 ORTHO05D004982 1.1e-58 230.3 180 69.4
AUR62000395 Chenopodium quinoa HOM05D004222 ORTHO05D004982 2.5e-58 229.2 172 70.3
Ciclev10026608m.g Citrus clementina HOM05D004222 ORTHO05D004982 2.5e-58 229.2 178 69.1
Lj9A532G68 Lonicera japonica HOM05D004222 ORTHO05D004982 2.5e-58 229.2 175 69.7
Lj9C524T6 Lonicera japonica HOM05D004222 ORTHO05D004982 2.5e-58 229.2 175 69.7
Actinidia32191 Actinidia chinensis HOM05D004222 ORTHO05D004982 4.3e-58 228.4 175 68.6
GSVIVG01016750001 Vitis vinifera HOM05D004222 ORTHO05D004982 4.3e-58 228.4 174 72.4
AUR62006751 Chenopodium quinoa HOM05D004222 ORTHO05D004982 9.5e-58 227.3 173 70.5
Thhalv10012402m.g Eutrema salsugineum HOM05D004222 ORTHO05D004982 1.6e-57 226.5 184 67.9
Cc04_g01280 Coffea canephora HOM05D004222 ORTHO05D004982 2.8e-57 225.7 175 69.7
Nitab4.5_0006737g0050 Nicotiana tabacum HOM05D004222 ORTHO05D004982 2.8e-57 225.7 179 68.7
EL10Ac4g09456 Beta vulgaris HOM05D004222 ORTHO05D004982 3.6e-57 225.3 172 69.8
Lsat_1_v5_gn_4_74980 Lactuca sativa HOM05D004222 ORTHO05D004982 3.6e-57 225.3 175 70.3
DCAR_023344 Daucus carota HOM05D004222 ORTHO05D004982 4.7e-57 224.9 174 70.1
DCAR_002631 Daucus carota HOM05D004222 ORTHO05D004982 6.2e-57 224.6 170 71.2
Solyc04g010090.3 Solanum lycopersicum HOM05D004222 ORTHO05D004982 6.2e-57 224.6 179 68.2
Sopen04g005230 Solanum pennellii HOM05D004222 ORTHO05D004982 6.2e-57 224.6 179 68.2
BcaC08g44165 Brassica carinata HOM05D004222 ORTHO05D004982 1.4e-56 223.4 178 66.9
Nitab4.5_0003780g0070 Nicotiana tabacum HOM05D004222 ORTHO05D004982 2.3e-56 222.6 179 68.2
CAN.G786.39 Capsicum annuum HOM05D004222 ORTHO05D004982 3.1e-56 222.2 179 67.0
Prupe.3G039800 Prunus persica HOM05D004222 ORTHO05D004982 3.1e-56 222.2 178 67.4
PGSC0003DMG400011493 Solanum tuberosum HOM05D004222 ORTHO05D004982 3.1e-56 222.2 179 68.2
Oeu026248.1 Olea europaea HOM05D004222 ORTHO05D004982 5.2e-56 221.5 174 66.1
PSO724G0032 Papaver somniferum HOM05D004222 ORTHO05D004982 8.9e-56 220.7 181 64.6
PSO135G0791 Papaver somniferum HOM05D004222 ORTHO05D004982 1.2e-55 220.3 180 65.6
SGA_v2.0_scaffold4G02066 Striga asiatica HOM05D004222 ORTHO05D004982 1.2e-55 220.3 179 68.2
SGA_v2.0_scaffold68G22854 Striga asiatica HOM05D004222 ORTHO05D004982 1.2e-55 220.3 177 67.8
Sed0002362 Sechium edule HOM05D004222 ORTHO05D004982 1.5e-55 219.9 171 68.4
Migut.I01080 Erythranthe guttata HOM05D004222 ORTHO05D004982 2.0e-55 219.5 178 68.0
AL1G62860 Arabidopsis lyrata HOM05D004222 ORTHO05D004982 2.6e-55 219.2 184 66.3
AT1G54140 Arabidopsis thaliana HOM05D004222 ORTHO05D004982 3.4e-55 218.8 185 65.9
MD09G1181700 Malus domestica HOM05D004222 ORTHO05D004982 3.4e-55 218.8 178 66.3
ECA232G1089 Erigeron canadensis HOM05D004222 ORTHO05D004982 5.8e-55 218.0 175 68.0
ATR0598G103 Amborella trichopoda HOM05D004222 ORTHO05D004982 7.6e-55 217.6 170 65.3
BolC6t36754H Brassica oleracea HOM05D004222 ORTHO05D004982 7.6e-55 217.6 178 65.7
THA.LOC104810368 Tarenaya hassleriana HOM05D004222 ORTHO05D004982 9.9e-55 217.2 191 63.4
Oeu043649.1 Olea europaea HOM05D004222 ORTHO05D004982 1.3e-54 216.9 187 62.6
PGR042G1688 Punica granatum HOM05D004222 ORTHO05D004982 1.3e-54 216.9 153 68.6
Aqoxy5G01362 Aquilegia oxysepala HOM05D004222 ORTHO05D004982 1.7e-54 216.5 135 77.0
CARHR044490 Cardamine hirsuta HOM05D004222 ORTHO05D004982 1.7e-54 216.5 181 65.7
Ah.04g158670 Amaranthus hybridus HOM05D004222 ORTHO05D004982 4.9e-54 214.9 173 65.3
SHI11210 Sapria himalayana HOM05D004222 ORTHO05D004982 4.9e-54 214.9 175 63.4
SalBow6G6030 Salvia bowleyana HOM05D004222 ORTHO05D004982 8.3e-54 214.2 166 65.7
AL1G63010 Arabidopsis lyrata HOM05D004222 ORTHO05D004982 1.9e-53 213.0 185 64.9
Carub.0001s4338 Capsella rubella HOM05D004222 ORTHO05D004982 2.4e-53 212.6 178 65.7
C06p15670 Brassica napus HOM05D004222 ORTHO05D004982 3.2e-53 212.2 154 69.5
Peaxi162Scf00528g00226 Petunia axillaris HOM05D004222 ORTHO05D004982 9.2e-53 210.7 129 78.3
MSTRG.9521 Avicennia marina HOM05D004222 ORTHO05D004982 1.6e-52 209.9 145 73.1
ECA232G2519 Erigeron canadensis HOM05D004222 ORTHO05D004982 2.1e-52 209.5 181 65.2
unitig_699.g19654 Utricularia gibba HOM05D004222 ORTHO05D004982 4.6e-52 208.4 177 64.4
CANSAT64G2454 Cannabis sativa HOM05D004222 ORTHO05D004982 6.0e-52 208.0 135 75.6
BcaB02g10859 Brassica carinata HOM05D004222 ORTHO05D004982 1.0e-51 207.2 168 65.5
SalBow6G2027 Salvia bowleyana HOM05D004222 ORTHO05D004982 1.7e-51 206.5 170 64.7
SalBow6G3336 Salvia bowleyana HOM05D004222 ORTHO05D004982 5.1e-51 204.9 170 64.1
HPP92_016607 Vanilla planifolia HOM05D004222 ORTHO05D004982 5.1e-51 204.9 188 61.2
Aa31LG10G1270 Aethionema arabicum HOM05D004222 ORTHO05D004982 8.6e-51 204.1 184 63.6
CDE08G1040 Ceratophyllum demersum HOM05D004222 ORTHO05D004982 1.5e-50 203.4 172 61.6
Ah.06g195960 Amaranthus hybridus HOM05D004222 ORTHO05D004982 5.6e-50 201.4 171 62.6
SEGI_03819 Sequoiadendron giganteum HOM05D004222 ORTHO05D004982 1.6e-49 199.9 174 62.1
Dinv10670 Davidia involucrata HOM05D004222 ORTHO05D004982 4.7e-49 198.4 159 66.7
MBI05_g15473_MAGBIO Magnolia biondii HOM05D004222 ORTHO05D004982 2.6e-47 192.6 176 58.5
Atru.chr1.2991 Acer truncatum HOM05D004222 ORTHO05D004982 4.9e-46 188.3 123 74.8
HanXRQChr09g0262591 Helianthus annuus HOM05D004222 ORTHO05D004982 7.8e-44 181.0 151 63.6
Os03g0408500 Oryza sativa ssp. japonica HOM05D004222 ORTHO05D004982 7.8e-44 181.0 173 58.4
Zm00001eb392970 Zea mays HOM05D004222 ORTHO05D004982 1.5e-42 176.8 143 61.5
SMO340G0157 Selaginella moellendorffii HOM05D004222 ORTHO05D004982 9.6e-42 174.1 134 59.7
Mapoly0152s0015 Marchantia polymorpha HOM05D004222 ORTHO05D004982 1.6e-41 173.3 182 50.0
Zm00001eb019630 Zea mays HOM05D004222 ORTHO05D004982 3.6e-41 172.2 179 54.2
Pp3c19_19770 Physcomitrium patens HOM05D004222 ORTHO05D004982 6.2e-41 171.4 169 52.7
CBR_g52315 Chara braunii HOM05D004222 ORTHO05D004982 8.1e-41 171.0 148 57.4
AagrBONN_evm.TU.Sc2ySwM_117.372 Anthoceros agrestis HOM05D004222 ORTHO05D004982 1.2e-36 157.1 173 47.4
Eucgr.J01267 Eucalyptus grandis HOM05D004222 ORTHO05D004982 2.1e-33 146.4 172 48.8
TPR.G12685 Trifolium pratense HOM05D004222 ORTHO05D004982 8.1e-33 144.4 95 74.7
AUR62029931 Chenopodium quinoa HOM05D004222 ORTHO05D004982 1.8e-32 143.3 91 75.8
AUR62033567 Chenopodium quinoa HOM05D004222 ORTHO05D004982 3.8e-30 135.6 88 75.0
AUR62043147 Chenopodium quinoa HOM05D004222 ORTHO05D004982 6.4e-30 134.8 86 74.4
Ah.06g188160 Amaranthus hybridus HOM05D000059 ORTHO05D004982 2.1e-28 129.8 123 61.0
Thhalv10029376m.g Eutrema salsugineum HOM05D004222 ORTHO05D004982 4.6e-28 128.6 102 65.7
Cc02_g29240 Coffea canephora HOM05D004222 ORTHO05D004982 1.8e-27 126.7 117 62.4
HanXRQChr14g0440851 Helianthus annuus HOM05D004222 ORTHO05D004982 2.3e-27 126.3 177 45.8
C06p09920 Brassica napus HOM05D004222 ORTHO05D004982 5.1e-27 125.2 128 55.5
Duzib160G0511 Durio zibethinus HOM05D004222 ORTHO05D004982 8.7e-27 124.4 114 60.5
TPR.G10895 Trifolium pratense HOM05D004222 ORTHO05D004982 1.2e-23 114.0 93 72.0
BcaC08g43594 Brassica carinata HOM05D004222 ORTHO05D004982 8.4e-22 107.8 90 65.6
BolC6t36064H Brassica oleracea HOM05D004222 ORTHO05D004982 8.4e-22 107.8 90 65.6
Cre07.g353350 Chlamydomonas reinhardtii HOM05D004222 ORTHO05D004982 8.4e-22 107.8 123 41.5
PRCOL_00004328 Prasinoderma coloniale HOM05D004222 ORTHO05D004982 9.3e-21 104.4 121 45.5
Haze_26828 Corylus avellana HOM05D000371 ORTHO05D004982 3.9e-19 99.0 116 37.9
Os07g0612500 Oryza sativa ssp. japonica HOM05D004222 ORTHO05D004982 1.9e-18 96.7 138 40.6
FAN05G5041 Fragaria x ananassa HOM05D004222 ORTHO05D004982 2.9e-14 82.8 89 53.9
Medtr6g027990 Medicago truncatula HOM05D004222 ORTHO05D004982 2.5e-13 79.7 66 59.1
MCO04G196 Micromonas commoda HOM05D004222 ORTHO05D004982 3.2e-13 79.3 91 42.9
unitig_52.g17107 Utricularia gibba HOM05D004222 ORTHO05D004982 1.1e-10 70.9 85 48.2
AUR62034601 Chenopodium quinoa HOM05D004222 ORTHO05D004982 9.7e-10 67.8 48 68.8
CARHR038570 Cardamine hirsuta HOM05D004222 ORTHO05D004982 5.3e-08 62.0 78 50.0
Nitab4.5_0018373g0020 Nicotiana tabacum HOM05D000428 ORTHO05D000582 5.9e-07 58.5 84 41.7


User provided reference genes

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