Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G199600 Phaseolus vulgaris HOM05D004315 ORTHO05D005089 3.9e-213 744.6 385 100.0
VMungo0647G0619 Vigna mungo HOM05D004315 ORTHO05D005089 2.1e-187 659.1 373 90.6
Glyma.02G281300 Glycine max HOM05D004315 ORTHO05D005089 4.2e-175 618.2 353 87.3
arahy.Tifrunner.gnm1.ann1.8V1VF7 Arachis hypogaea HOM05D004315 ORTHO05D005089 4.5e-169 598.2 359 83.6
LjContig00049g0028236 Lotus japonicus HOM05D004315 ORTHO05D005089 1.0e-168 597.0 360 82.8
TPR.G24734 Trifolium pratense HOM05D004315 ORTHO05D005089 4.6e-166 588.2 366 81.4
arahy.Tifrunner.gnm1.ann1.VQL6P1 Arachis hypogaea HOM05D004315 ORTHO05D005089 2.3e-165 585.9 366 81.1
Medtr5g090130 Medicago truncatula HOM05D004315 ORTHO05D005089 6.7e-165 584.3 359 81.3
Psat2g018080 Pisum sativum HOM05D004315 ORTHO05D005089 6.7e-165 584.3 361 81.7
Lalb_Chr10g0106401 Lupinus albus HOM05D004315 ORTHO05D005089 1.8e-162 576.2 361 80.3
GSVIVG01020802001 Vitis vinifera HOM05D004315 ORTHO05D005089 3.4e-153 545.4 351 77.2
TAR629G1010 Trochodendron aralioides HOM05D004315 ORTHO05D005089 5.0e-152 541.6 349 77.1
MD17G1131300 Malus domestica HOM05D004315 ORTHO05D005089 4.2e-151 538.5 351 75.8
RcHm_v2.0_Chr2g0152961 Rosa chinensis HOM05D004315 ORTHO05D005089 9.4e-151 537.3 351 74.9
Dinv05044 Davidia involucrata HOM05D004315 ORTHO05D005089 3.6e-150 535.4 347 77.2
Duzib264G0097 Durio zibethinus HOM05D004315 ORTHO05D005089 3.6e-150 535.4 347 77.5
Thecc.01G165100 Theobroma cacao HOM05D004315 ORTHO05D005089 3.6e-150 535.4 347 77.8
Eucgr.A00888 Eucalyptus grandis HOM05D004315 ORTHO05D005089 7.9e-150 534.3 347 76.9
MD09G1144800 Malus domestica HOM05D004315 ORTHO05D005089 1.0e-149 533.9 351 74.6
Nn3g20219 Nelumbo nucifera HOM05D004315 ORTHO05D005089 8.8e-149 530.8 349 75.9
Gohir.A05G380500 Gossypium hirsutum HOM05D004315 ORTHO05D005089 4.4e-148 528.5 347 77.8
Gorai.012G039600 Gossypium raimondii HOM05D004315 ORTHO05D005089 4.4e-148 528.5 347 77.8
FvH4_6g39150 Fragaria vesca HOM05D004315 ORTHO05D005089 5.7e-148 528.1 351 74.1
FAN14G1093 Fragaria x ananassa HOM05D004315 ORTHO05D005089 5.7e-148 528.1 351 74.1
Potri.014G143500 Populus trichocarpa HOM05D004315 ORTHO05D005089 7.4e-148 527.7 350 74.6
PGR031G0720 Punica granatum HOM05D004315 ORTHO05D005089 7.4e-148 527.7 351 74.9
FAN05G3231 Fragaria x ananassa HOM05D004315 ORTHO05D005089 1.7e-147 526.6 351 73.8
Prupe.3G183100 Prunus persica HOM05D004315 ORTHO05D005089 2.2e-147 526.2 347 74.1
CANSAT64G0449 Cannabis sativa HOM05D004315 ORTHO05D005089 2.8e-147 525.8 347 76.4
MBI18_g11296_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 4.8e-147 525.0 350 75.1
Aqoxy1G01576 Aquilegia oxysepala HOM05D004315 ORTHO05D005089 6.3e-147 524.6 351 74.6
Hma1.2p1_0583F.1_g183050 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 2.4e-146 522.7 348 74.4
Ciclev10031991m.g Citrus clementina HOM05D004315 ORTHO05D005089 1.2e-145 520.4 348 75.6
TWI14G0586 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 2.0e-145 519.6 349 73.1
TWI59G1372 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 3.4e-145 518.8 349 72.5
CiPaw.03G190700 Carya illinoinensis HOM05D004315 ORTHO05D005089 4.5e-145 518.5 354 74.6
CSS0039894 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 1.0e-144 517.3 346 73.4
Sabra14G0108500 Salix brachista HOM05D004315 ORTHO05D005089 6.5e-144 514.6 372 70.4
DCAR_013332 Daucus carota HOM05D004315 ORTHO05D005089 1.4e-143 513.5 354 71.5
PSO675G7088 Papaver somniferum HOM05D004315 ORTHO05D005089 1.4e-143 513.5 348 73.3
vmacro03380 Vaccinium macrocarpon HOM05D004315 ORTHO05D005089 3.2e-143 512.3 354 73.2
ATR0165G021 Amborella trichopoda HOM05D004315 ORTHO05D005089 1.2e-142 510.4 325 78.8
MBI02_g32064_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 7.9e-142 507.7 332 76.8
CAN.G1316.2 Capsicum annuum HOM05D004315 ORTHO05D005089 2.0e-140 503.1 357 71.4
HanXRQChr04g0115031 Helianthus annuus HOM05D004315 ORTHO05D005089 2.0e-140 503.1 355 70.7
HanXRQChr01g0023901 Helianthus annuus HOM05D004315 ORTHO05D005089 2.6e-140 502.7 351 71.8
Lsat_1_v5_gn_2_30700 Lactuca sativa HOM05D004315 ORTHO05D005089 2.6e-140 502.7 354 71.5
Solyc07g044750.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 5.7e-140 501.5 355 70.7
Nitab4.5_0001843g0170 Nicotiana tabacum HOM05D004315 ORTHO05D005089 7.4e-140 501.1 359 70.2
Sopen07g023340 Solanum pennellii HOM05D004315 ORTHO05D005089 9.7e-140 500.7 350 71.7
Gohir.D04G035100 Gossypium hirsutum HOM05D004315 ORTHO05D005089 1.7e-139 500.0 329 77.2
HanXRQChr14g0432981 Helianthus annuus HOM05D004315 ORTHO05D005089 2.8e-139 499.2 363 68.9
ECA248G0068 Erigeron canadensis HOM05D004315 ORTHO05D005089 2.4e-138 496.1 349 71.9
Lj2A329G54 Lonicera japonica HOM05D004315 ORTHO05D005089 2.4e-138 496.1 328 74.7
Rhsim13G0121900 Rhododendron simsii HOM05D004315 ORTHO05D005089 4.1e-138 495.4 381 68.8
CSS0023242 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 5.3e-138 495.0 355 70.7
Cpa.g.sc1123.2 Carica papaya HOM05D004315 ORTHO05D005089 5.3e-138 495.0 352 71.9
Cfa000809 Carpinus fangiana HOM05D004315 ORTHO05D005089 7.0e-138 494.6 354 72.3
Cc05_g00540 Coffea canephora HOM05D004315 ORTHO05D005089 9.1e-138 494.2 367 68.7
MELO3C026388.2 Cucumis melo HOM05D004315 ORTHO05D005089 1.6e-137 493.4 352 70.7
PGSC0003DMG400021156 Solanum tuberosum HOM05D004315 ORTHO05D005089 2.0e-137 493.0 354 71.2
Oeu044867.2 Olea europaea HOM05D004315 ORTHO05D005089 4.5e-137 491.9 385 66.2
Peaxi162Scf00351g00818 Petunia axillaris HOM05D004315 ORTHO05D005089 4.5e-137 491.9 349 71.1
Potri.001G466900 Populus trichocarpa HOM05D004315 ORTHO05D005089 2.2e-136 489.6 325 74.5
ClCG07G010830 Citrullus lanatus HOM05D004315 ORTHO05D005089 3.8e-136 488.8 353 69.7
MELO3C016194.2 Cucumis melo HOM05D004315 ORTHO05D005089 5.0e-136 488.4 356 70.2
Migut.H01268 Erythranthe guttata HOM05D004315 ORTHO05D005089 5.0e-136 488.4 357 68.6
Potri.011G164500 Populus trichocarpa HOM05D004315 ORTHO05D005089 2.5e-135 486.1 338 72.8
SEGI_10868 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 3.2e-135 485.7 346 70.8
CsaV3_4G007480 Cucumis sativus L. HOM05D004315 ORTHO05D005089 4.2e-135 485.3 355 69.6
CiPaw.10G109400 Carya illinoinensis HOM05D004315 ORTHO05D005089 1.2e-134 483.8 355 69.9
PSO541G6471 Papaver somniferum HOM05D004315 ORTHO05D005089 1.6e-134 483.4 328 72.9
GSVIVG01021661001 Vitis vinifera HOM05D004315 ORTHO05D005089 1.6e-134 483.4 350 71.4
Sabra16G0316700 Salix brachista HOM05D004315 ORTHO05D005089 3.3e-132 475.7 372 67.2
Sed0001791 Sechium edule HOM05D004315 ORTHO05D005089 9.7e-132 474.2 350 68.0
CANSAT35G0713 Cannabis sativa HOM05D004315 ORTHO05D005089 1.3e-131 473.8 341 70.7
COL.COLO4_29897 Corchorus olitorius HOM05D004315 ORTHO05D005089 2.2e-131 473.0 307 78.2
Nitab4.5_0006724g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 2.2e-131 473.0 334 71.9
CDE05G3605 Ceratophyllum demersum HOM05D003391 ORTHO05D005563 2.8e-131 472.6 357 66.7
Cc09_g07890 Coffea canephora HOM05D004315 ORTHO05D005089 1.1e-130 470.7 327 71.3
ClCG11G016660 Citrullus lanatus HOM05D004315 ORTHO05D005089 2.4e-130 469.5 407 61.4
Lsat_1_v5_gn_1_91760 Lactuca sativa HOM05D004315 ORTHO05D005089 5.3e-130 468.4 364 65.7
Oeu015176.1 Olea europaea HOM05D004315 ORTHO05D005089 5.9e-129 464.9 326 72.4
Oeu041105.1 Olea europaea HOM05D004315 ORTHO05D005089 1.3e-128 463.8 326 71.2
Dinv10789 Davidia involucrata HOM05D004315 ORTHO05D005089 2.2e-128 463.0 327 72.5
SalBow8G0183 Salvia bowleyana HOM05D004315 ORTHO05D005089 2.2e-128 463.0 330 68.8
Aa31LG10G6590 Aethionema arabicum HOM05D004315 ORTHO05D005089 7.2e-127 458.0 329 67.8
Atru.chr10.841 Acer truncatum HOM05D004315 ORTHO05D005089 1.2e-126 457.2 330 71.2
AT1G30540 Arabidopsis thaliana HOM05D004315 ORTHO05D005089 1.2e-126 457.2 345 66.7
Sabra11G0140700 Salix brachista HOM05D004315 ORTHO05D005089 1.2e-126 457.2 375 64.8
CARHR029950 Cardamine hirsuta HOM05D004315 ORTHO05D005089 1.6e-126 456.8 343 66.5
Duzib147G0966 Durio zibethinus HOM05D004315 ORTHO05D005089 1.6e-126 456.8 347 67.7
AL1G44580 Arabidopsis lyrata HOM05D004315 ORTHO05D005089 3.6e-126 455.7 345 66.7
Os09g0133700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 3.6e-126 455.7 346 66.5
BcaC05g27075 Brassica carinata HOM05D004315 ORTHO05D005089 4.7e-126 455.3 343 66.2
Migut.M01899 Erythranthe guttata HOM05D004315 ORTHO05D005089 1.0e-125 454.1 328 69.5
Nitab4.5_0000076g0250 Nicotiana tabacum HOM05D004315 ORTHO05D005089 1.4e-125 453.8 332 69.9
HPP92_005880 Vanilla planifolia HOM05D004315 ORTHO05D005089 1.4e-125 453.8 349 65.6
Carub.0001s2880 Capsella rubella HOM05D004315 ORTHO05D005089 5.2e-125 451.8 320 69.4
Solyc02g023980.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 5.2e-125 451.8 334 69.2
Thhalv10008046m.g Eutrema salsugineum HOM05D004315 ORTHO05D005089 6.8e-125 451.4 348 65.2
C05p29560 Brassica napus HOM05D004315 ORTHO05D005089 8.8e-125 451.1 344 66.0
DCAR_007839 Daucus carota HOM05D004315 ORTHO05D005089 8.8e-125 451.1 330 70.3
MSTRG.16294 Avicennia marina HOM05D004315 ORTHO05D005089 1.2e-124 450.7 337 67.7
BolC5t31687H Brassica oleracea HOM05D004315 ORTHO05D005089 1.2e-124 450.7 344 66.0
A09p35900 Brassica napus HOM05D004315 ORTHO05D005089 2.0e-124 449.9 341 65.7
Lj1A584G30 Lonicera japonica HOM05D004315 ORTHO05D005089 2.6e-124 449.5 343 68.2
Os07g0147700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 3.4e-124 449.1 350 67.1
BraA09t39115Z Brassica rapa HOM05D004315 ORTHO05D005089 4.4e-124 448.7 341 65.7
Glyma.14G033300 Glycine max HOM05D004315 ORTHO05D005089 7.5e-124 448.0 268 82.5
BcaB07g32690 Brassica carinata HOM05D004315 ORTHO05D005089 1.3e-123 447.2 321 68.5
Sp1g26410 Schrenkiella parvula HOM05D004315 ORTHO05D005089 8.3e-123 444.5 350 64.3
Zm00001eb299940 Zea mays HOM05D004315 ORTHO05D005089 8.3e-123 444.5 348 65.5
THA.LOC104798598 Tarenaya hassleriana HOM05D004315 ORTHO05D005089 2.4e-122 443.0 365 61.6
SHI10516 Sapria himalayana HOM05D004315 ORTHO05D005089 4.1e-122 442.2 325 66.8
CAN.G304.4 Capsicum annuum HOM05D004315 ORTHO05D005089 1.2e-121 440.7 334 67.4
Zm00001eb261810 Zea mays HOM05D004315 ORTHO05D005089 1.2e-121 440.7 346 65.6
Ah.09g232250 Amaranthus hybridus HOM05D004315 ORTHO05D005089 1.6e-121 440.3 322 68.3
unitig_37.g12072 Utricularia gibba HOM05D004315 ORTHO05D005089 2.0e-121 439.9 338 65.1
Nitab4.5_0011274g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 8.6e-120 434.5 315 70.2
Actinidia12522 Actinidia chinensis HOM05D004315 ORTHO05D005089 5.5e-119 431.8 344 65.1
SGA_v2.0_scaffold223G42867 Striga asiatica HOM05D004315 ORTHO05D005089 2.1e-118 429.9 357 61.9
Peaxi162Scf00395g00318 Petunia axillaris HOM05D004315 ORTHO05D005089 3.6e-118 429.1 322 68.6
PGSC0003DMG401028079 Solanum tuberosum HOM05D004315 ORTHO05D005089 1.0e-117 427.6 317 69.1
Manes.02G090600 Manihot esculenta HOM05D004315 ORTHO05D005089 9.8e-116 421.0 269 76.6
CsaV3_4G032170 Cucumis sativus L. HOM05D004315 ORTHO05D005089 3.1e-114 416.0 352 61.9
QL05p061983 Quercus lobata HOM05D004315 ORTHO05D005089 1.2e-113 414.1 546 45.6
Atru.chr6.2011 Acer truncatum HOM05D004315 ORTHO05D005089 7.8e-113 411.4 274 76.6
BcaB07g32692 Brassica carinata HOM05D004315 ORTHO05D005089 1.3e-112 410.6 325 64.9
Sed0020733 Sechium edule HOM05D004315 ORTHO05D005089 3.4e-108 396.0 288 71.9
BcaB07g32666 Brassica carinata HOM05D004315 ORTHO05D005089 9.2e-98 361.3 323 58.8
Mapoly0122s0046 Marchantia polymorpha HOM05D004315 ORTHO05D005089 8.6e-96 354.8 352 53.7
Lsat_1_v5_gn_1_77721 Lactuca sativa HOM05D004315 ORTHO05D005089 2.2e-91 340.1 232 73.7
SMO334G0132 Selaginella moellendorffii HOM05D004315 ORTHO05D005089 8.3e-91 338.2 334 52.4
Manes.14G123700 Manihot esculenta HOM05D004315 ORTHO05D005089 3.0e-88 329.7 242 66.9
Haze_05864 Corylus avellana HOM05D004315 ORTHO05D005089 8.6e-88 328.2 282 63.1
Actinidia01578 Actinidia chinensis HOM05D004315 ORTHO05D005089 8.9e-85 318.2 230 71.3
Pp3c17_6390 Physcomitrium patens HOM05D004315 ORTHO05D005089 2.6e-84 316.6 305 54.1
Hma1.2p1_0067F.1_g036960 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 4.4e-84 315.8 206 77.2
Sc10g0005420 Simmondsia chinensis HOM05D004315 ORTHO05D005089 1.3e-83 314.3 230 69.1
Haze_05859 Corylus avellana HOM05D004315 ORTHO05D005089 6.6e-80 302.0 268 61.2
Sopen02g006690 Solanum pennellii HOM05D004315 ORTHO05D005089 2.6e-76 290.0 203 73.4
Cfa023542 Carpinus fangiana HOM05D004315 ORTHO05D005089 3.5e-73 279.6 188 74.5
Haze_13622 Corylus avellana HOM05D004315 ORTHO05D005089 2.1e-70 270.4 163 81.6
Hund21564 Selenicereus undatus HOM05D004315 ORTHO05D005089 1.9e-63 247.3 185 65.4
CBR_g20100 Chara braunii HOM05D004315 ORTHO05D005089 1.6e-62 244.2 372 39.2
Zm00001eb058170 Zea mays HOM05D004315 ORTHO05D005089 3.5e-57 226.5 186 63.4
QL05p062039 Quercus lobata HOM05D004315 ORTHO05D005089 1.5e-55 221.1 215 54.9
Hund21563 Selenicereus undatus HOM05D004315 ORTHO05D005089 2.1e-54 217.2 161 68.3
Actinidia33709 Actinidia chinensis HOM05D004315 ORTHO05D005089 5.3e-53 212.6 165 66.7
Manes.01G131701 Manihot esculenta HOM05D004315 ORTHO05D005089 5.8e-52 209.1 143 72.0
TPR.G1178 Trifolium pratense HOM05D003586 ORTHO05D004036 2.2e-51 207.2 197 57.4
AagrBONN_evm.TU.Sc2ySwM_117.2193 Anthoceros agrestis HOM05D004315 ORTHO05D005089 1.3e-48 198.0 269 43.1
PRCOL_00003495 Prasinoderma coloniale HOM05D004315 ORTHO05D005089 7.2e-42 175.6 330 36.7
Manes.01G131702 Manihot esculenta HOM05D004315 ORTHO05D005089 3.8e-35 153.3 116 69.0
Cre17.g720528 Chlamydomonas reinhardtii HOM05D004315 ORTHO05D005089 5.9e-28 129.4 286 33.6
SEGI_40766 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 1.1e-26 125.2 114 56.1
QL04p059944 Quercus lobata HOM05D004315 ORTHO05D005089 3.9e-24 116.7 71 78.9
MCO07G054 Micromonas commoda HOM05D004315 ORTHO05D005089 5.2e-24 116.3 378 30.4
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 1.1e-21 108.6 254 32.7
SEGI_21833 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 1.0e-19 102.1 215 33.0
Atru.chr6.2012 Acer truncatum HOM05D004315 ORTHO05D005089 6.5e-19 99.4 67 73.1
TAR624G0620 Trochodendron aralioides HOM05D004315 ORTHO05D005089 2.7e-17 94.0 69 65.2
VMungo1383G0961 Vigna mungo HOM05D001558 ORTHO05D005808 1.4e-16 91.7 65 70.8
Cfa023541 Carpinus fangiana HOM05D004315 ORTHO05D005089 3.0e-16 90.5 56 78.6
Hma1.2p1_0067F.1_g036930 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 5.2e-16 89.7 57 73.7
DCAR_009744 Daucus carota HOM05D004315 ORTHO05D018839 4.4e-15 86.7 91 50.5
CDE04G1567 Ceratophyllum demersum HOM05D001307 ORTHO05D005089 4.5e-12 76.6 77 50.6
Ah.03g146620 Amaranthus hybridus HOM05D004315 ORTHO05D005089 2.1e-09 67.8 52 61.5
Gohir.D08G092932 Gossypium hirsutum HOM05D004315 ORTHO05D217518 6.3e-06 56.2 46 63.0


User provided reference genes

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