Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G194300 Phaseolus vulgaris HOM05D003673 ORTHO05D004764 1.2e-250 869.4 435 100.0
VMungo0647G2026 Vigna mungo HOM05D003673 ORTHO05D004764 1.3e-236 822.8 433 94.0
Glyma.14G030400 Glycine max HOM05D003673 ORTHO05D004764 5.5e-216 754.2 429 88.1
arahy.Tifrunner.gnm1.ann1.FDUH0H Arachis hypogaea HOM05D003673 ORTHO05D004764 1.8e-195 686.0 440 78.0
arahy.Tifrunner.gnm1.ann1.I7WXBP Arachis hypogaea HOM05D003673 ORTHO05D004764 1.2e-194 683.3 440 78.0
LjContig00049g0013493 Lotus japonicus HOM05D003673 ORTHO05D004764 1.7e-193 679.5 436 77.3
Lalb_Chr04g0248921 Lupinus albus HOM05D003673 ORTHO05D004764 3.6e-191 671.8 417 77.9
ClCG11G016540 Citrullus lanatus HOM05D003673 ORTHO05D004764 1.8e-190 669.5 438 76.5
FvH4_6g38670 Fragaria vesca HOM05D003673 ORTHO05D004764 2.3e-190 669.1 426 77.7
FAN14G2563 Fragaria x ananassa HOM05D003673 ORTHO05D004764 2.3e-190 669.1 426 77.7
FAN02G0649 Fragaria x ananassa HOM05D003673 ORTHO05D004764 2.6e-189 665.6 428 77.1
FAN09G3261 Fragaria x ananassa HOM05D003673 ORTHO05D004764 6.3e-188 661.0 428 76.4
RcHm_v2.0_Chr2g0152131 Rosa chinensis HOM05D003673 ORTHO05D004764 1.4e-187 659.8 423 76.1
FAN05G2105 Fragaria x ananassa HOM05D003673 ORTHO05D004764 5.4e-187 657.9 427 76.1
PGR042G2748 Punica granatum HOM05D003673 ORTHO05D004764 5.4e-187 657.9 427 76.1
TWI59G0698 Tripterygium wilfordii HOM05D003673 ORTHO05D004764 1.2e-186 656.8 431 74.5
Ca_06264_v3 Cicer arietinum L. HOM05D003673 ORTHO05D004764 2.0e-186 656.0 429 75.3
Ca_30265_v3 Cicer arietinum L. HOM05D003673 ORTHO05D004764 2.0e-186 656.0 429 75.3
Ciclev10031587m.g Citrus clementina HOM05D003673 ORTHO05D004764 3.5e-186 655.2 430 76.5
CsaV3_4G032000 Cucumis sativus L. HOM05D003673 ORTHO05D004764 3.5e-186 655.2 432 75.2
MELO3C022961.2 Cucumis melo HOM05D003673 ORTHO05D004764 4.5e-186 654.8 440 74.1
Sed0005423 Sechium edule HOM05D003673 ORTHO05D004764 5.0e-185 651.4 425 77.2
Cfa023358 Carpinus fangiana HOM05D003673 ORTHO05D004764 1.5e-184 649.8 429 75.3
Haze_13556 Corylus avellana HOM05D003673 ORTHO05D004764 1.9e-184 649.4 428 75.0
Eucgr.A02022 Eucalyptus grandis HOM05D003673 ORTHO05D004764 3.3e-184 648.7 429 74.1
Manes.02G088900 Manihot esculenta HOM05D003673 ORTHO05D004764 4.3e-184 648.3 430 74.4
Prupe.3G177700 Prunus persica HOM05D003673 ORTHO05D004764 4.3e-184 648.3 427 74.2
CiPaw.03G191900 Carya illinoinensis HOM05D003673 ORTHO05D004764 2.1e-183 646.0 426 74.9
CSS0042622 Camellia sinensis var. sinensis HOM05D003673 ORTHO05D004764 3.6e-183 645.2 419 75.7
TPR.G10168 Trifolium pratense HOM05D003673 ORTHO05D004764 3.6e-183 645.2 424 75.0
Potri.002G057400 Populus trichocarpa HOM05D003673 ORTHO05D004764 1.0e-182 643.7 427 74.9
Sabra02G0046800 Salix brachista HOM05D003673 ORTHO05D004764 1.8e-182 642.9 427 74.7
MD17G1134800 Malus domestica HOM05D003673 ORTHO05D004764 3.1e-182 642.1 427 73.1
Gorai.001G092000 Gossypium raimondii HOM05D003673 ORTHO05D004764 8.9e-182 640.6 429 74.8
QL08p044989 Quercus lobata HOM05D003673 ORTHO05D004764 8.9e-182 640.6 434 74.7
Psat2g017880 Pisum sativum HOM05D003673 ORTHO05D004764 1.5e-181 639.8 434 72.8
Gohir.D07G086000 Gossypium hirsutum HOM05D003673 ORTHO05D004764 2.0e-181 639.4 429 74.8
Medtr5g091060 Medicago truncatula HOM05D003673 ORTHO05D004764 5.8e-181 637.9 424 75.5
Gohir.A07G080400 Gossypium hirsutum HOM05D003673 ORTHO05D004764 1.7e-180 636.3 429 74.6
Dinv07706 Davidia involucrata HOM05D003673 ORTHO05D004764 2.9e-180 635.6 426 73.7
AUR62015128 Chenopodium quinoa HOM05D003673 ORTHO05D004764 6.4e-180 634.4 431 72.4
Cpa.g.sc50.111 Carica papaya HOM05D003673 ORTHO05D004764 1.4e-179 633.3 425 74.4
AUR62017589 Chenopodium quinoa HOM05D003673 ORTHO05D004764 1.9e-179 632.9 423 73.0
Thecc.01G168600 Theobroma cacao HOM05D003673 ORTHO05D004764 1.6e-178 629.8 433 73.2
Sc19g0001760 Simmondsia chinensis HOM05D003673 ORTHO05D004764 1.7e-177 626.3 433 72.3
HanXRQChr14g0451901 Helianthus annuus HOM05D003673 ORTHO05D004764 3.9e-177 625.2 431 74.0
COL.COLO4_38400 Corchorus olitorius HOM05D003673 ORTHO05D004764 6.6e-177 624.4 432 73.1
TAR626G0427 Trochodendron aralioides HOM05D003673 ORTHO05D004764 1.5e-176 623.2 425 72.2
CANSAT64G0060 Cannabis sativa HOM05D003673 ORTHO05D004764 2.5e-176 622.5 431 71.2
CANSAT64G2396 Cannabis sativa HOM05D003673 ORTHO05D004764 9.5e-176 620.5 416 73.8
A09p66930 Brassica napus HOM05D003673 ORTHO05D004764 1.6e-175 619.8 417 73.4
Eucgr.A02024 Eucalyptus grandis HOM05D003673 ORTHO05D004764 2.8e-175 619.0 440 69.8
Hund22282 Selenicereus undatus HOM05D003673 ORTHO05D004764 2.8e-175 619.0 424 71.7
Nn7g37943 Nelumbo nucifera HOM05D003673 ORTHO05D004764 3.6e-175 618.6 417 73.1
Nitab4.5_0000006g0440 Nicotiana tabacum HOM05D003673 ORTHO05D004764 4.7e-175 618.2 426 73.7
Nitab4.5_0002201g0040 Nicotiana tabacum HOM05D003673 ORTHO05D004764 8.0e-175 617.5 426 73.5
SGA_v2.0_scaffold73G24479 Striga asiatica HOM05D003673 ORTHO05D004764 1.1e-174 617.1 419 73.7
Migut.M00071 Erythranthe guttata HOM05D003673 ORTHO05D004764 1.8e-174 616.3 434 70.7
C08p51160 Brassica napus HOM05D003673 ORTHO05D004764 5.2e-174 614.8 420 72.4
BolC8t52642H Brassica oleracea HOM05D003673 ORTHO05D004764 5.2e-174 614.8 420 72.4
DCAR_023045 Daucus carota HOM05D003673 ORTHO05D004764 6.8e-174 614.4 426 73.0
ECA238G4715 Erigeron canadensis HOM05D003673 ORTHO05D004764 8.9e-174 614.0 431 70.8
Sp1g05330 Schrenkiella parvula HOM05D003673 ORTHO05D004764 2.0e-173 612.8 420 72.4
vmacro04781 Vaccinium macrocarpon HOM05D003673 ORTHO05D004764 2.0e-173 612.8 421 72.2
Ah.01g013590 Amaranthus hybridus HOM05D003673 ORTHO05D004764 2.6e-173 612.5 425 71.5
Peaxi162Scf00416g00004 Petunia axillaris HOM05D003673 ORTHO05D004764 3.4e-173 612.1 422 72.5
AL1G16600 Arabidopsis lyrata HOM05D003673 ORTHO05D004764 5.8e-173 611.3 420 72.4
EL10Ac9g22832 Beta vulgaris HOM05D003673 ORTHO05D004764 5.8e-173 611.3 420 71.9
BcaC07g42060 Brassica carinata HOM05D003673 ORTHO05D004764 5.8e-173 611.3 419 72.1
MSTRG.14903 Avicennia marina HOM05D003673 ORTHO05D004764 1.3e-172 610.1 437 69.6
Carub.0001s0594 Capsella rubella HOM05D003673 ORTHO05D004764 1.7e-172 609.8 420 71.4
Medtr1g022325 Medicago truncatula HOM05D003673 ORTHO05D004764 1.7e-172 609.8 435 71.0
THA.LOC104815838 Tarenaya hassleriana HOM05D003673 ORTHO05D004764 2.2e-172 609.4 424 71.2
Aa31LG1G7910 Aethionema arabicum HOM05D003673 ORTHO05D004764 2.9e-172 609.0 419 70.4
Rhsim07G0197900 Rhododendron simsii HOM05D003673 ORTHO05D004764 8.3e-172 607.4 426 72.8
BcaNung07075 Brassica carinata HOM05D003673 ORTHO05D004764 1.9e-171 606.3 426 71.1
Hma1.2p1_0033F.1_g021200 Hydrangea macrophylla HOM05D003673 ORTHO05D004764 1.9e-171 606.3 433 70.9
BraA09t42028Z Brassica rapa HOM05D003673 ORTHO05D004764 2.4e-171 605.9 426 71.4
Sopen05g024810 Solanum pennellii HOM05D003673 ORTHO05D004764 2.4e-171 605.9 421 73.2
BolC5t29254H Brassica oleracea HOM05D003673 ORTHO05D004764 4.1e-171 605.1 426 70.7
Eucgr.A02023 Eucalyptus grandis HOM05D003673 ORTHO05D004764 7.0e-171 604.4 436 68.1
Medtr5g090990 Medicago truncatula HOM05D003673 ORTHO05D004764 1.6e-170 603.2 434 69.8
A10p05210 Brassica napus HOM05D003673 ORTHO05D004764 2.1e-170 602.8 426 70.7
C05p04810 Brassica napus HOM05D003673 ORTHO05D004764 2.7e-170 602.4 426 70.2
Sopen07g023610 Solanum pennellii HOM05D003673 ORTHO05D004764 2.7e-170 602.4 424 71.2
PGSC0003DMG400017707 Solanum tuberosum HOM05D003673 ORTHO05D004764 2.7e-170 602.4 421 72.4
CAN.G7.15 Capsicum annuum HOM05D003673 ORTHO05D004764 4.6e-170 601.7 421 72.4
Solyc07g045050.3 Solanum lycopersicum HOM05D003673 ORTHO05D004764 6.0e-170 601.3 424 71.2
PGSC0003DMG400017420 Solanum tuberosum HOM05D003673 ORTHO05D004764 6.0e-170 601.3 424 70.8
BraA10t42788Z Brassica rapa HOM05D003673 ORTHO05D004764 1.0e-169 600.5 426 70.4
Thhalv10007634m.g Eutrema salsugineum HOM05D003673 ORTHO05D004764 1.0e-169 600.5 424 70.8
SalBow1G2057 Salvia bowleyana HOM05D003673 ORTHO05D004764 4.3e-168 595.1 418 71.5
CDE05G0951 Ceratophyllum demersum HOM05D003673 ORTHO05D004764 2.1e-167 592.8 449 69.5
Oeu051389.1 Olea europaea HOM05D003673 ORTHO05D004764 1.4e-166 590.1 419 70.9
Aqoxy1G01890 Aquilegia oxysepala HOM05D003673 ORTHO05D004764 1.2e-165 587.0 424 67.9
Aqoxy1G01891 Aquilegia oxysepala HOM05D003673 ORTHO05D004764 1.2e-165 587.0 422 69.9
MBI18_g13605_MAGBIO Magnolia biondii HOM05D003673 ORTHO05D004764 7.5e-165 584.3 430 69.3
EL10Ac9g22831 Beta vulgaris HOM05D003673 ORTHO05D004764 5.4e-163 578.2 410 68.5
SalBow7G3717 Salvia bowleyana HOM05D004564 ORTHO05D006106 9.2e-163 577.4 395 72.4
PSO675G0095 Papaver somniferum HOM05D003673 ORTHO05D004764 8.6e-161 570.9 420 67.4
Glyma.02G284600 Glycine max HOM05D003673 ORTHO05D004764 2.5e-160 569.3 344 83.1
RcHm_v2.0_Chr2g0152141 Rosa chinensis HOM05D003673 ORTHO05D004764 4.3e-160 568.5 378 74.1
unitig_899.g15456 Utricularia gibba HOM05D003673 ORTHO05D004764 3.6e-159 565.5 423 68.3
COL.COLO4_38402 Corchorus olitorius HOM05D003673 ORTHO05D004764 1.4e-158 563.5 418 65.8
BcaB02g06780 Brassica carinata HOM05D003673 ORTHO05D004764 4.4e-157 558.5 423 67.4
CANSAT64G0777 Cannabis sativa HOM05D003673 ORTHO05D004764 1.3e-156 557.0 425 66.1
Zm00001eb232960 Zea mays HOM05D003673 ORTHO05D004764 1.5e-152 543.5 419 66.6
PSO675G5654 Papaver somniferum HOM05D003673 ORTHO05D004764 3.3e-152 542.3 418 64.4
Dinv07089 Davidia involucrata HOM05D003673 ORTHO05D004764 3.6e-151 538.9 378 71.4
Actinidia24401 Actinidia chinensis HOM05D003673 ORTHO05D004764 2.0e-149 533.1 433 65.4
Lsat_1_v5_gn_2_96721 Lactuca sativa HOM05D003673 ORTHO05D004764 1.6e-146 523.5 389 69.2
HPP92_002268 Vanilla planifolia HOM05D003673 ORTHO05D004764 4.6e-146 521.9 397 66.8
AT1G06570 Arabidopsis thaliana HOM05D003673 ORTHO05D004764 1.3e-145 520.4 370 70.8
PSO144G0168 Papaver somniferum HOM05D003673 ORTHO05D004764 6.6e-145 518.1 428 61.0
CARHR006180 Cardamine hirsuta HOM05D003673 ORTHO05D004764 1.5e-144 516.9 372 69.6
Lsat_1_v5_gn_6_42781 Lactuca sativa HOM05D003673 ORTHO05D004764 1.5e-144 516.9 420 61.4
CDE02G2922 Ceratophyllum demersum HOM05D003673 ORTHO05D004764 1.9e-144 516.5 432 63.9
SEGI_30126 Sequoiadendron giganteum HOM05D003673 ORTHO05D004764 4.3e-144 515.4 426 62.7
PSO170G5322 Papaver somniferum HOM05D003673 ORTHO05D004764 1.1e-142 510.8 426 60.3
Thecc.01G168800 Theobroma cacao HOM05D003673 ORTHO05D004764 1.4e-142 510.4 426 62.2
HanXRQChr02g0055101 Helianthus annuus HOM05D003673 ORTHO05D004764 4.0e-142 508.8 431 59.9
PSO210G5105 Papaver somniferum HOM05D003673 ORTHO05D004764 1.2e-141 507.3 428 59.1
AagrBONN_evm.TU.Sc2ySwM_368.1457 Anthoceros agrestis HOM05D003673 ORTHO05D004764 1.7e-140 503.4 419 61.8
Pp3c1_27020 Physcomitrium patens HOM05D003673 ORTHO05D004764 1.9e-139 500.0 423 60.5
Mapoly0126s0038 Marchantia polymorpha HOM05D003673 ORTHO05D004764 2.3e-137 493.0 421 59.4
PSO210G1881 Papaver somniferum HOM05D003673 ORTHO05D004764 3.9e-137 492.3 433 57.3
PSO210G6115 Papaver somniferum HOM05D003673 ORTHO05D004764 8.7e-137 491.1 426 58.5
Pp3c2_15470 Physcomitrium patens HOM05D003673 ORTHO05D004764 1.6e-135 486.9 421 59.9
SMO358G0369 Selaginella moellendorffii HOM05D003673 ORTHO05D004764 7.4e-128 461.5 433 58.0
CBR_g41741 Chara braunii HOM05D003673 ORTHO05D004764 4.8e-127 458.8 441 55.3
Cre09.g399030 Chlamydomonas reinhardtii HOM05D003673 ORTHO05D004764 2.4e-126 456.4 426 57.5
CBR_g46667 Chara braunii HOM05D003673 ORTHO05D004764 2.0e-125 453.4 443 54.4
Lj8C8T1 Lonicera japonica HOM05D003673 ORTHO05D004764 2.6e-125 453.0 347 68.3
PRCOL_00001771 Prasinoderma coloniale HOM05D003673 ORTHO05D004764 5.8e-125 451.8 438 54.3
Cre09.g398993 Chlamydomonas reinhardtii HOM05D003673 ORTHO05D004764 6.5e-124 448.4 426 56.6
CBR_g8495 Chara braunii HOM05D003673 ORTHO05D004764 5.5e-123 445.3 441 53.7
Zm00001eb304950 Zea mays HOM05D003673 ORTHO05D004764 1.8e-121 440.3 410 56.1
Potri.005G205200 Populus trichocarpa HOM05D003673 ORTHO05D004764 1.9e-120 436.8 434 56.7
ECA233G6193 Erigeron canadensis HOM05D003673 ORTHO05D004764 2.5e-120 436.4 371 60.1
MCO11G070 Micromonas commoda HOM05D003673 ORTHO05D004764 1.3e-119 434.1 442 54.3
AagrBONN_evm.TU.Sc2ySwM_368.1545 Anthoceros agrestis HOM05D003673 ORTHO05D004764 4.5e-117 425.6 414 53.6
Solyc05g041200.4 Solanum lycopersicum HOM05D003673 ORTHO05D004764 2.0e-112 410.2 313 69.6
Medtr5g090980 Medicago truncatula HOM05D003673 ORTHO05D004764 1.4e-110 404.1 376 58.8
MD09G1148400 Malus domestica HOM05D003673 ORTHO05D004764 4.1e-110 402.5 375 58.4
Ah.02g114000 Amaranthus hybridus HOM05D003673 ORTHO05D004764 1.2e-106 391.0 375 54.7
TPR.G25540 Trifolium pratense HOM05D003673 ORTHO05D004764 3.6e-106 389.4 433 49.2
SMO118G0557 Selaginella moellendorffii HOM05D003673 ORTHO05D004764 1.3e-103 380.9 419 50.1
ATR0763G164 Amborella trichopoda HOM05D003673 ORTHO05D004764 1.7e-103 380.6 275 68.0
MD13G1156600 Malus domestica HOM05D003673 ORTHO05D004764 5.0e-100 369.0 376 50.8
Os02g0168100 Oryza sativa ssp. japonica HOM05D003673 ORTHO05D004764 1.8e-97 360.5 222 73.9
arahy.Tifrunner.gnm1.ann1.KE2YGW Arachis hypogaea HOM05D003673 ORTHO05D004764 2.0e-93 347.1 380 56.6
arahy.Tifrunner.gnm1.ann1.3I6JIA Arachis hypogaea HOM05D003673 ORTHO05D004764 1.3e-84 317.8 239 71.5
AUR62016194 Chenopodium quinoa HOM05D003673 ORTHO05D004764 1.8e-81 307.4 302 56.6
Atru.chr6.2046 Acer truncatum HOM05D003673 ORTHO05D004764 2.2e-79 300.4 170 82.9
Thecc.01G169100 Theobroma cacao HOM05D003673 ORTHO05D004764 2.5e-75 287.0 248 61.3
AUR62039301 Chenopodium quinoa HOM05D003673 ORTHO05D004764 4.6e-61 239.6 212 54.7
AUR62044533 Chenopodium quinoa HOM05D003673 ORTHO05D004764 4.6e-61 239.6 212 54.7
AUR62035118 Chenopodium quinoa HOM05D003673 ORTHO05D004764 5.0e-60 236.1 205 56.1
AUR62039293 Chenopodium quinoa HOM05D003673 ORTHO05D004764 5.0e-60 236.1 205 56.1
AUR62039297 Chenopodium quinoa HOM05D003673 ORTHO05D004764 5.0e-60 236.1 205 56.1
AUR62035117 Chenopodium quinoa HOM05D003673 ORTHO05D017143 2.8e-50 203.8 218 56.0
AUR62039294 Chenopodium quinoa HOM05D003673 ORTHO05D017143 2.8e-50 203.8 218 56.0
AUR62039298 Chenopodium quinoa HOM05D003673 ORTHO05D017143 2.8e-50 203.8 218 56.0
GSVIVG01020837001 Vitis vinifera HOM05D003673 ORTHO05D004764 5.8e-48 196.1 104 85.6
Cc05_g01440 Coffea canephora HOM05D003673 ORTHO05D004764 7.6e-48 195.7 104 83.7
FvH4_5g31130 Fragaria vesca HOM05D003673 ORTHO05D004764 2.1e-34 151.0 88 79.5
Atru.chr6.2045 Acer truncatum HOM05D003673 ORTHO05D017143 2.8e-34 150.6 99 70.7
Cfa023357 Carpinus fangiana HOM05D003673 ORTHO05D017143 8.1e-34 149.1 86 80.2
AUR62044532 Chenopodium quinoa HOM05D003673 ORTHO05D017143 2.4e-33 147.5 131 60.3
FAN18G0200 Fragaria x ananassa HOM05D003673 ORTHO05D004764 2.4e-33 147.5 88 77.3
Haze_25279 Corylus avellana HOM05D003673 ORTHO05D004764 1.3e-31 141.7 162 50.6
Dinv42661 Davidia involucrata HOM05D002888 ORTHO05D003321 4.2e-30 136.7 106 64.2
MD05G1024200 Malus domestica HOM05D003673 ORTHO05D004764 7.9e-29 132.5 75 78.7
COL.COLO4_38401 Corchorus olitorius HOM05D003673 ORTHO05D004764 1.3e-26 125.2 151 48.3
ATR0763G191 Amborella trichopoda HOM05D003673 ORTHO05D017143 6.4e-23 112.8 110 51.8
GSVIVG01013079001 Vitis vinifera HOM05D003673 ORTHO05D004764 7.1e-22 109.4 65 73.8
COL.COLO4_20758 Corchorus olitorius HOM05D003673 ORTHO05D004764 1.2e-21 108.6 71 71.8
AUR62039302 Chenopodium quinoa HOM05D003673 ORTHO05D017143 6.7e-20 102.8 144 50.0
Dinv21956 Davidia involucrata HOM05D003673 ORTHO05D004764 8.7e-20 102.4 100 59.0
TPR.G10161 Trifolium pratense HOM05D003673 ORTHO05D004764 1.9e-19 101.3 56 82.1
CARHR006190 Cardamine hirsuta HOM05D003673 ORTHO05D004764 5.6e-19 99.8 51 86.3
Lj8C8T3 Lonicera japonica HOM05D003673 ORTHO05D004764 1.3e-10 72.0 37 86.5
MD05G1024100 Malus domestica HOM05D003673 ORTHO05D017143 1.6e-10 71.6 48 68.8
COL.COLO4_19675 Corchorus olitorius HOM05D003673 ORTHO05D163473 2.8e-10 70.9 348 24.7


User provided reference genes

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