Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G183600 Phaseolus vulgaris HOM05D004775 ORTHO05D005351 2.5e-89 332.0 158 100.0
Glyma.14G183500 Glycine max HOM05D004775 ORTHO05D005351 7.2e-81 303.9 161 91.3
Glyma.02G216500 Glycine max HOM05D004775 ORTHO05D005351 4.6e-80 301.2 162 90.7
TPR.G27047 Trifolium pratense HOM05D004775 ORTHO05D005351 1.0e-74 283.5 159 82.4
LjContig00408g0019215 Lotus japonicus HOM05D004775 ORTHO05D005351 1.3e-74 283.1 162 84.0
Psat2g064440 Pisum sativum HOM05D004775 ORTHO05D005351 9.7e-70 266.9 163 75.5
Medtr5g066840 Medicago truncatula HOM05D004775 ORTHO05D005351 3.7e-69 265.0 160 76.9
Lalb_Chr11g0064841 Lupinus albus HOM05D004775 ORTHO05D005351 1.1e-68 263.5 158 76.6
arahy.Tifrunner.gnm1.ann1.ZY5S91 Arachis hypogaea HOM05D004775 ORTHO05D005351 1.4e-68 263.1 163 74.8
COL.COLO4_35296 Corchorus olitorius HOM05D004775 ORTHO05D005351 6.9e-68 260.8 158 75.3
VMungo0647G0779 Vigna mungo HOM05D004775 ORTHO05D005351 1.5e-67 259.6 135 91.9
Ca_05476_v3 Cicer arietinum L. HOM05D004775 ORTHO05D005351 2.0e-67 259.2 161 76.4
Ca_30556_v3 Cicer arietinum L. HOM05D004775 ORTHO05D005351 2.0e-67 259.2 161 76.4
Thecc.08G074700 Theobroma cacao HOM05D004775 ORTHO05D005351 4.5e-67 258.1 158 74.1
Atru.chr13.955 Acer truncatum HOM05D004775 ORTHO05D005351 5.9e-67 257.7 158 75.3
Duzib093G0042 Durio zibethinus HOM05D004775 ORTHO05D005351 5.9e-67 257.7 158 76.6
Lalb_Chr17g0344651 Lupinus albus HOM05D004775 ORTHO05D005351 1.3e-66 256.5 150 78.7
Gorai.009G227600 Gossypium raimondii HOM05D004775 ORTHO05D005351 3.8e-66 255.0 156 75.6
Gohir.A05G216900 Gossypium hirsutum HOM05D004775 ORTHO05D005351 5.0e-66 254.6 156 75.0
QL12p039787 Quercus lobata HOM05D004775 ORTHO05D005351 5.0e-66 254.6 160 75.6
TWI56G0975 Tripterygium wilfordii HOM05D004775 ORTHO05D005351 6.5e-66 254.2 164 73.2
Manes.18G057500 Manihot esculenta HOM05D004775 ORTHO05D005351 1.1e-65 253.4 158 74.1
Ca_15537_v3 Cicer arietinum L. HOM05D000583 ORTHO05D000442 1.9e-65 252.7 153 78.4
Gohir.D05G220600 Gossypium hirsutum HOM05D004775 ORTHO05D005351 2.5e-65 252.3 156 74.4
Ciclev10002525m.g Citrus clementina HOM05D004775 ORTHO05D005351 3.2e-65 251.9 162 72.2
PGR042G0432 Punica granatum HOM05D004775 ORTHO05D005351 7.2e-65 250.8 159 71.1
CiPaw.07G162400 Carya illinoinensis HOM05D004775 ORTHO05D005351 9.4e-65 250.4 160 75.6
MD08G1206200 Malus domestica HOM05D004775 ORTHO05D005351 1.2e-64 250.0 158 72.8
MD15G1389500 Malus domestica HOM05D004775 ORTHO05D005351 1.2e-64 250.0 158 73.4
TWI12G1154 Tripterygium wilfordii HOM05D004775 ORTHO05D005351 1.2e-64 250.0 152 75.0
Gohir.A01G125800 Gossypium hirsutum HOM05D004775 ORTHO05D005351 2.1e-64 249.2 158 71.5
Psat0s3268g0200 Pisum sativum HOM05D004775 ORTHO05D005351 2.1e-64 249.2 158 73.4
Potri.002G109800 Populus trichocarpa HOM05D004775 ORTHO05D005351 2.1e-64 249.2 160 72.5
TWI36G1537 Tripterygium wilfordii HOM05D004775 ORTHO05D005351 6.1e-64 247.7 158 71.5
Duzib041G0637 Durio zibethinus HOM05D004775 ORTHO05D005351 1.4e-63 246.5 178 66.9
Gorai.002G138100 Gossypium raimondii HOM05D004775 ORTHO05D005351 1.4e-63 246.5 158 70.9
Duzib116G0735 Durio zibethinus HOM05D004775 ORTHO05D005351 1.8e-63 246.1 154 72.7
Gohir.D01G113700 Gossypium hirsutum HOM05D004775 ORTHO05D005351 1.8e-63 246.1 158 70.9
ClCG11G014720 Citrullus lanatus HOM05D004775 ORTHO05D005351 2.3e-63 245.7 164 70.7
Prupe.1G538600 Prunus persica HOM05D004775 ORTHO05D005351 2.3e-63 245.7 156 72.4
MSTRG.932 Avicennia marina HOM05D004775 ORTHO05D005351 5.1e-63 244.6 158 69.6
Dinv42587 Davidia involucrata HOM05D004775 ORTHO05D005351 5.1e-63 244.6 158 70.3
Actinidia10268 Actinidia chinensis HOM05D004775 ORTHO05D005351 1.5e-62 243.0 159 73.0
MSTRG.24993 Avicennia marina HOM05D004775 ORTHO05D005351 2.6e-62 242.3 159 70.4
CANSAT25G1480 Cannabis sativa HOM05D004775 ORTHO05D005351 9.7e-62 240.4 152 73.7
Medtr3g111440 Medicago truncatula HOM05D004775 ORTHO05D005351 1.7e-61 239.6 158 72.8
Cc10_g08310 Coffea canephora HOM05D004775 ORTHO05D005351 2.2e-61 239.2 158 70.3
CSS0014871 Camellia sinensis var. sinensis HOM05D004775 ORTHO05D005351 3.7e-61 238.4 159 70.4
Gohir.A06G030500 Gossypium hirsutum HOM05D004775 ORTHO05D005351 3.7e-61 238.4 158 69.6
CsaV3_3G048130 Cucumis sativus L. HOM05D004775 ORTHO05D005351 1.1e-60 236.9 165 70.3
MELO3C003503.2 Cucumis melo HOM05D004775 ORTHO05D005351 2.4e-60 235.7 165 69.7
Cpa.g.sc177.17 Carica papaya HOM05D004775 ORTHO05D005351 3.1e-60 235.3 165 66.1
unitig_578.g16108 Utricularia gibba HOM05D004775 ORTHO05D005351 4.1e-60 235.0 160 68.1
RcHm_v2.0_Chr7g0233601 Rosa chinensis HOM05D004775 ORTHO05D005351 5.3e-60 234.6 159 69.2
unitig_8.g4905 Utricularia gibba HOM05D004775 ORTHO05D005351 5.3e-60 234.6 160 68.1
FAN18G1173 Fragaria x ananassa HOM05D004775 ORTHO05D005351 7.0e-60 234.2 159 67.9
FAN08G1925 Fragaria x ananassa HOM05D004775 ORTHO05D005351 1.2e-59 233.4 159 67.3
Peaxi162Scf00962g00039 Petunia axillaris HOM05D004775 ORTHO05D005351 1.2e-59 233.4 158 66.5
Sed0025083 Sechium edule HOM05D004775 ORTHO05D005351 1.6e-59 233.0 164 67.1
Gorai.010G032800 Gossypium raimondii HOM05D004775 ORTHO05D005351 2.0e-59 232.6 158 67.7
GSVIVG01009216001 Vitis vinifera HOM05D004775 ORTHO05D005351 2.6e-59 232.3 153 70.6
Gohir.D06G029800 Gossypium hirsutum HOM05D004775 ORTHO05D005351 5.9e-59 231.1 158 67.7
TPR.G12363 Trifolium pratense HOM05D004775 ORTHO05D005351 5.9e-59 231.1 160 69.4
FAN04G2969 Fragaria x ananassa HOM05D004775 ORTHO05D005351 7.7e-59 230.7 159 67.3
Sed0023619 Sechium edule HOM05D004775 ORTHO05D005351 7.7e-59 230.7 158 68.4
Nitab4.5_0018050g0020 Nicotiana tabacum HOM05D004775 ORTHO05D005351 1.7e-58 229.6 158 67.1
Nitab4.5_0003184g0020 Nicotiana tabacum HOM05D004775 ORTHO05D005351 2.2e-58 229.2 158 68.4
THA.LOC104823690 Tarenaya hassleriana HOM05D004775 ORTHO05D005351 2.9e-58 228.8 157 65.6
CAN.G723.7 Capsicum annuum HOM05D004775 ORTHO05D005351 8.5e-58 227.3 151 70.2
Solyc04g076670.3 Solanum lycopersicum HOM05D004775 ORTHO05D005351 1.1e-57 226.9 151 69.5
Sopen04g030390 Solanum pennellii HOM05D004775 ORTHO05D005351 1.1e-57 226.9 151 69.5
TAR381G0646 Trochodendron aralioides HOM05D004775 ORTHO05D005351 3.2e-57 225.3 158 65.8
Sc26g0003070 Simmondsia chinensis HOM05D004775 ORTHO05D005351 4.2e-57 224.9 154 66.2
THA.LOC104816787 Tarenaya hassleriana HOM05D004775 ORTHO05D005351 1.2e-56 223.4 158 62.0
AL1G20520 Arabidopsis lyrata HOM05D004775 ORTHO05D005351 6.1e-56 221.1 153 66.0
AT1G09920 Arabidopsis thaliana HOM05D004775 ORTHO05D005351 6.1e-56 221.1 153 67.3
Aqoxy6G00652 Aquilegia oxysepala HOM05D004775 ORTHO05D005351 8.0e-56 220.7 159 64.8
CARHR009970 Cardamine hirsuta HOM05D004775 ORTHO05D005351 1.0e-55 220.3 153 65.4
Carub.0001s0930 Capsella rubella HOM05D004775 ORTHO05D005351 1.4e-55 219.9 153 65.4
ECA246G4228 Erigeron canadensis HOM05D004775 ORTHO05D005351 1.4e-55 219.9 158 62.7
Nn5g29801 Nelumbo nucifera HOM05D004775 ORTHO05D005351 1.8e-55 219.5 158 63.3
vmacro21362 Vaccinium macrocarpon HOM05D004775 ORTHO05D005351 1.8e-55 219.5 146 70.5
CAN.G1104.13 Capsicum annuum HOM05D004775 ORTHO05D005351 3.0e-55 218.8 159 64.8
Migut.C00072 Erythranthe guttata HOM05D004775 ORTHO05D005351 5.2e-55 218.0 159 63.5
Sabra02G0086400 Salix brachista HOM05D004775 ORTHO05D005351 5.2e-55 218.0 143 70.6
Oeu038164.1 Olea europaea HOM05D004775 ORTHO05D005351 1.5e-54 216.5 159 62.9
Hma1.2p1_0125F.1_g058660 Hydrangea macrophylla HOM05D004775 ORTHO05D005351 2.0e-54 216.1 149 69.1
BraA08t35340Z Brassica rapa HOM05D004775 ORTHO05D005351 3.3e-54 215.3 155 64.5
DCAR_020031 Daucus carota HOM05D004775 ORTHO05D005351 3.3e-54 215.3 158 63.3
A08p34290 Brassica napus HOM05D004775 ORTHO05D005351 7.5e-54 214.2 153 64.1
C08p13270 Brassica napus HOM05D004775 ORTHO05D005351 7.5e-54 214.2 155 63.9
BolC8t48959H Brassica oleracea HOM05D004775 ORTHO05D005351 7.5e-54 214.2 155 63.9
TAR625G1011 Trochodendron aralioides HOM05D004775 ORTHO05D005351 7.5e-54 214.2 152 67.1
BcaC07g38533 Brassica carinata HOM05D004775 ORTHO05D005351 1.3e-53 213.4 155 63.9
C05p08040 Brassica napus HOM05D004775 ORTHO05D005351 1.7e-53 213.0 154 61.7
Solyc12g088070.2 Solanum lycopersicum HOM05D004775 ORTHO05D005351 1.7e-53 213.0 159 61.0
BolC5t29556H Brassica oleracea HOM05D004775 ORTHO05D005351 3.7e-53 211.8 154 61.0
Lsat_1_v5_gn_6_107340 Lactuca sativa HOM05D004775 ORTHO05D005351 3.7e-53 211.8 156 62.2
Sp1g08560 Schrenkiella parvula HOM05D004775 ORTHO05D005351 3.7e-53 211.8 149 65.1
Haze_22493 Corylus avellana HOM05D004775 ORTHO05D005351 4.8e-53 211.5 189 57.1
BcaC05g24832 Brassica carinata HOM05D004775 ORTHO05D005351 6.3e-53 211.1 155 61.3
Thhalv10008829m.g Eutrema salsugineum HOM05D004775 ORTHO05D005351 1.1e-52 210.3 150 65.3
A06p06630 Brassica napus HOM05D004775 ORTHO05D005351 4.1e-52 208.4 154 60.4
BraA06t23877Z Brassica rapa HOM05D004775 ORTHO05D005351 4.1e-52 208.4 154 60.4
HanXRQChr05g0163501 Helianthus annuus HOM05D004775 ORTHO05D005351 7.0e-52 207.6 155 63.2
Sopen12g030090 Solanum pennellii HOM05D004775 ORTHO05D005351 7.0e-52 207.6 159 60.4
FvH4_5g34100 Fragaria vesca HOM05D004775 ORTHO05D005351 1.6e-51 206.5 142 69.0
HanXRQChr10g0277731 Helianthus annuus HOM05D004775 ORTHO05D005351 2.0e-51 206.1 161 60.2
PSO532G0015 Papaver somniferum HOM05D004775 ORTHO05D005351 4.5e-51 204.9 154 64.3
Aa31LG1G4980 Aethionema arabicum HOM05D000583 ORTHO05D000442 5.9e-51 204.5 151 62.3
Hma1.2p1_0010F.1_g006440 Hydrangea macrophylla HOM05D004775 ORTHO05D005351 7.7e-51 204.1 140 65.0
PSO541G5225 Papaver somniferum HOM05D004775 ORTHO05D005351 1.7e-50 203.0 154 63.0
Dinv44879 Davidia involucrata HOM05D000583 ORTHO05D000442 2.2e-50 202.6 125 72.8
ECA247G3351 Erigeron canadensis HOM05D004775 ORTHO05D005351 5.0e-50 201.4 158 58.9
MBI16_g12296_MAGBIO Magnolia biondii HOM05D004775 ORTHO05D005351 8.5e-50 200.7 152 60.5
GSVIVG01009218001 Vitis vinifera HOM05D004775 ORTHO05D005351 1.1e-49 200.3 156 64.7
Nitab4.5_0000354g0090 Nicotiana tabacum HOM05D004775 ORTHO05D005351 1.5e-49 199.9 156 59.6
HanXRQChr02g0046001 Helianthus annuus HOM05D004775 ORTHO05D005351 2.5e-49 199.1 151 58.3
PSO541G4289 Papaver somniferum HOM05D004775 ORTHO05D005351 2.5e-49 199.1 154 63.0
Phvul.009G145000 Phaseolus vulgaris HOM05D004775 ORTHO05D005351 7.2e-49 197.6 158 63.3
CAN.G1104.12 Capsicum annuum HOM05D004775 ORTHO05D005351 1.2e-48 196.8 150 59.3
Eucgr.F00443 Eucalyptus grandis HOM05D004775 ORTHO05D005351 6.1e-48 194.5 132 68.2
Glyma.06G092700 Glycine max HOM05D004775 ORTHO05D005351 8.0e-48 194.1 158 61.4
BcaB03g13545 Brassica carinata HOM05D004775 ORTHO05D005351 1.1e-44 183.7 134 63.4
CDE01G0193 Ceratophyllum demersum HOM05D004775 ORTHO05D005351 5.4e-44 181.4 141 59.6
Lsat_1_v5_gn_1_840 Lactuca sativa HOM05D004775 ORTHO05D005351 2.0e-43 179.5 165 55.8
CDE02G4408 Ceratophyllum demersum HOM05D004775 ORTHO05D005351 2.2e-42 176.0 139 58.3
Actinidia19256 Actinidia chinensis HOM05D004775 ORTHO05D005351 3.8e-42 175.3 95 77.9
Zm00001eb017320 Zea mays HOM05D004775 ORTHO05D005351 1.1e-41 173.7 156 53.2
SEGI_14572 Sequoiadendron giganteum HOM05D004775 ORTHO05D005351 2.0e-38 162.9 157 49.7
ATR0800G163 Amborella trichopoda HOM05D004775 ORTHO05D005351 2.6e-38 162.5 89 75.3
Nitab4.5_0000885g0090 Nicotiana tabacum HOM05D004775 ORTHO05D005351 3.4e-38 162.2 156 53.2
Solyc12g088060.2 Solanum lycopersicum HOM05D004775 ORTHO05D005351 1.7e-37 159.8 114 63.2
Zm00001eb394470 Zea mays HOM05D004775 ORTHO05D005351 2.2e-37 159.5 153 52.3
PGSC0003DMG402002053 Solanum tuberosum HOM05D004775 ORTHO05D005351 3.1e-36 155.6 156 48.1
unitig_37.g13069 Utricularia gibba HOM05D000316 ORTHO05D005351 5.4e-36 154.8 156 49.4
Zm00001eb110680 Zea mays HOM05D004775 ORTHO05D005351 3.5e-35 152.1 151 45.7
VMungo1309G0719 Vigna mungo HOM05D004775 ORTHO05D005351 2.9e-34 149.1 145 52.4
EL10Ac1g00475 Beta vulgaris HOM05D004775 ORTHO05D005351 1.9e-33 146.4 160 47.5
Os03g0356652 Oryza sativa ssp. japonica HOM05D004775 ORTHO05D005351 4.3e-33 145.2 156 46.8
Os07g0657500 Oryza sativa ssp. japonica HOM05D004775 ORTHO05D005351 5.6e-33 144.8 155 41.9
Hund17253 Selenicereus undatus HOM05D004775 ORTHO05D005351 5.6e-33 144.8 138 50.0
Mapoly0004s0283 Marchantia polymorpha HOM05D004775 ORTHO05D005351 2.4e-28 129.4 160 38.8
MBI05_g43456_MAGBIO Magnolia biondii HOM05D004775 ORTHO05D005351 1.1e-25 120.6 72 68.1
Nn1g05655 Nelumbo nucifera HOM05D004775 ORTHO05D005351 6.2e-24 114.8 65 69.2
MBI10_g33158_MAGBIO Magnolia biondii HOM05D004775 ORTHO05D005351 1.0e-23 114.0 72 63.9
Manes.12G122400 Manihot esculenta HOM05D004775 ORTHO05D005351 9.8e-22 107.5 150 36.0
AUR62019121 Chenopodium quinoa HOM05D004775 ORTHO05D005351 2.2e-21 106.3 148 40.5
AUR62014379 Chenopodium quinoa HOM05D004775 ORTHO05D005351 6.4e-21 104.8 148 41.2
SGA_v2.0_scaffold74G24544 Striga asiatica HOM05D004775 ORTHO05D005351 3.2e-20 102.4 91 60.4
BcaC07g41856 Brassica carinata HOM05D004775 ORTHO05D005351 6.0e-19 98.2 150 38.0
BolC8t52458H Brassica oleracea HOM05D000348 ORTHO05D000244 6.0e-19 98.2 150 38.0
BraA09t41874Z Brassica rapa HOM05D000348 ORTHO05D000244 1.3e-18 97.1 150 36.7
Sopen12g030080 Solanum pennellii HOM05D000583 ORTHO05D000442 1.1e-17 94.0 104 47.1
Dinv36973 Davidia involucrata HOM05D004775 ORTHO05D005351 6.2e-16 88.2 150 34.7
Glyma.04G091000 Glycine max HOM05D004775 ORTHO05D005351 4.1e-12 75.5 56 69.6
Medtr3g099560 Medicago truncatula HOM05D004775 ORTHO05D005351 3.0e-10 69.3 39 76.9
Atru.chr6.3231 Acer truncatum HOM05D006348 ORTHO05D008261 1.6e-08 63.5 97 33.0
Aqoxy1G03030 Aquilegia oxysepala HOM05D006348 ORTHO05D008261 3.6e-08 62.4 86 34.9
EL10Ac5g11991 Beta vulgaris HOM05D006348 ORTHO05D008261 4.7e-08 62.0 92 33.7
Dinv08741 Davidia involucrata HOM05D006348 ORTHO05D008261 1.1e-07 60.8 92 34.8
ClCG02G002100 Citrullus lanatus HOM05D006348 ORTHO05D008261 1.4e-07 60.5 93 32.3
MELO3C018834.2 Cucumis melo HOM05D006348 ORTHO05D008261 1.4e-07 60.5 93 32.3
ATR0681G302 Amborella trichopoda HOM05D006348 ORTHO05D008261 1.8e-07 60.1 85 34.1
AT4G15420 Arabidopsis thaliana HOM05D006348 ORTHO05D008261 2.3e-07 59.7 98 30.6
AL7G40130 Arabidopsis lyrata HOM05D006348 ORTHO05D008261 3.1e-07 59.3 98 30.6
SGA_v2.0_scaffold159G37573 Striga asiatica HOM05D006348 ORTHO05D008261 3.1e-07 59.3 85 34.1
CARHR222170 Cardamine hirsuta HOM05D006348 ORTHO05D008261 5.2e-07 58.5 98 30.6


User provided reference genes

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