Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G182500 Phaseolus vulgaris HOM05D006001 ORTHO05D006714 8.7e-168 594.0 398 100.0
Glyma.02G215100 Glycine max HOM05D006001 ORTHO05D006714 1.6e-105 387.1 400 63.8
Glyma.14G182400 Glycine max HOM05D006001 ORTHO05D006714 1.3e-91 340.9 402 63.2
LjContig00408g0013719 Lotus japonicus HOM05D006001 ORTHO05D006714 1.1e-77 294.7 408 53.2
arahy.Tifrunner.gnm1.ann1.5459VI Arachis hypogaea HOM05D006001 ORTHO05D006714 5.3e-72 275.8 399 45.9
arahy.Tifrunner.gnm1.ann1.X0SJ4P Arachis hypogaea HOM05D006001 ORTHO05D006714 9.6e-66 255.0 435 42.1
Psat2g065160 Pisum sativum HOM05D006001 ORTHO05D006714 4.0e-64 249.6 405 45.2
Ca_05452_v3 Cicer arietinum L. HOM05D006001 ORTHO05D006714 4.0e-56 223.0 408 40.0
Medtr5g066450 Medicago truncatula HOM05D006001 ORTHO05D006714 6.9e-56 222.2 411 39.2
VMungo1127G1493 Vigna mungo HOM05D006001 ORTHO05D006714 1.5e-50 204.5 124 83.9
Lalb_Chr17g0344581 Lupinus albus HOM05D006001 ORTHO05D006714 9.0e-48 195.3 397 55.4
TPR.G34712 Trifolium pratense HOM05D006001 ORTHO05D006714 2.7e-44 183.7 402 49.0
Lj6g0019377 Lotus japonicus HOM05D006001 ORTHO05D006714 7.4e-34 149.1 364 34.6
Manes.18G058066 Manihot esculenta HOM05D006001 ORTHO05D006714 9.7e-34 148.7 415 31.8
Cfa013804 Carpinus fangiana HOM05D006001 ORTHO05D006714 1.8e-32 144.4 434 38.9
QL12p023212 Quercus lobata HOM05D006001 ORTHO05D006714 1.0e-30 138.7 434 32.5
QL09p017955 Quercus lobata HOM05D006001 ORTHO05D006714 1.3e-30 138.3 432 35.2
Haze_22467 Corylus avellana HOM05D006001 ORTHO05D006714 3.8e-30 136.7 434 39.9
CiPaw.03G148200 Carya illinoinensis HOM05D006001 ORTHO05D006714 1.2e-28 131.7 447 29.8
Haze_22468 Corylus avellana HOM05D006001 ORTHO05D006714 4.7e-28 129.8 407 45.2
Prupe.1G533200 Prunus persica HOM05D006001 ORTHO05D006714 3.0e-27 127.1 431 47.6
Potri.002G111500 Populus trichocarpa HOM05D006001 ORTHO05D006714 1.7e-25 121.3 401 30.4
Thecc.08G071800 Theobroma cacao HOM05D006001 ORTHO05D006714 3.1e-24 117.1 398 27.4
Duzib128G1071 Durio zibethinus HOM05D006001 ORTHO05D006714 9.1e-24 115.5 403 33.7
Potri.005G153300 Populus trichocarpa HOM05D006001 ORTHO05D006714 1.0e-22 112.1 397 28.5
GSVIVG01009188001 Vitis vinifera HOM05D006001 ORTHO05D006714 1.3e-22 111.7 407 31.9
CsaV3_2G036230 Cucumis sativus L. HOM05D006001 ORTHO05D006714 2.9e-22 110.5 406 30.3
CiPaw.07G164600 Carya illinoinensis HOM05D006001 ORTHO05D006714 8.5e-22 109.0 440 31.1
Sabra02G0088000 Salix brachista HOM05D006001 ORTHO05D006714 3.2e-21 107.1 433 28.9
MD08G1199700 Malus domestica HOM05D006001 ORTHO05D006714 9.4e-21 105.5 398 41.0
Ciclev10001506m.g Citrus clementina HOM05D006001 ORTHO05D006714 1.2e-20 105.1 407 33.2
MELO3C021835.2 Cucumis melo HOM05D006001 ORTHO05D006714 1.6e-20 104.8 435 28.7
CANSAT11G1699 Cannabis sativa HOM05D006001 ORTHO05D006714 6.1e-20 102.8 409 29.3
Atru.chr13.1002 Acer truncatum HOM05D006001 ORTHO05D006714 3.0e-19 100.5 405 32.8
COL.COLO4_35255 Corchorus olitorius HOM05D006001 ORTHO05D006714 3.0e-19 100.5 414 29.5
Duzib106G1137 Durio zibethinus HOM05D006001 ORTHO05D006714 4.0e-19 100.1 401 33.2
THA.LOC104806890 Tarenaya hassleriana HOM05D006001 ORTHO05D006714 6.7e-19 99.4 417 29.3
Gohir.A05G320600 Gossypium hirsutum HOM05D006001 ORTHO05D006714 2.6e-18 97.4 433 27.5
Sc04g0007160 Simmondsia chinensis HOM05D006001 ORTHO05D006714 9.7e-18 95.5 404 30.4
ClCG09G016810 Citrullus lanatus HOM05D006001 ORTHO05D006714 3.7e-17 93.6 430 27.2
Gorai.009G346500 Gossypium raimondii HOM05D006001 ORTHO05D006714 3.7e-17 93.6 430 28.4
TAR381G0479 Trochodendron aralioides HOM05D006001 ORTHO05D006714 6.3e-17 92.8 401 31.4
Eucgr.L02666 Eucalyptus grandis HOM05D006001 ORTHO05D006714 1.8e-16 91.3 406 26.6
TWI56G0486 Tripterygium wilfordii HOM05D006001 ORTHO05D006714 1.8e-16 91.3 423 31.7
Nitab4.5_0000354g0120 Nicotiana tabacum HOM05D006001 ORTHO05D006714 2.4e-16 90.9 421 37.3
Cpa.g.c29936.2 Carica papaya HOM05D006001 ORTHO05D006714 3.1e-16 90.5 412 27.4
Dinv42605 Davidia involucrata HOM05D006001 ORTHO05D006714 3.1e-16 90.5 415 34.7
Sed0021215 Sechium edule HOM05D006001 ORTHO05D006714 3.1e-16 90.5 126 44.4
Oeu063699.1 Olea europaea HOM05D006001 ORTHO05D006714 7.0e-16 89.4 416 26.9
Eucgr.H00032 Eucalyptus grandis HOM05D006001 ORTHO05D006714 1.2e-15 88.6 406 26.4
Gohir.D05G322800 Gossypium hirsutum HOM05D006001 ORTHO05D006714 2.7e-15 87.4 405 26.4
Peaxi162Scf00160g00103 Petunia axillaris HOM05D006001 ORTHO05D006714 7.7e-15 85.9 397 27.2
CAN.G1700.2 Capsicum annuum HOM05D006001 ORTHO05D006714 1.3e-14 85.1 417 35.7
MELO3C008828.2 Cucumis melo HOM05D006001 ORTHO05D006714 1.3e-14 85.1 410 27.6
Hund26817 Selenicereus undatus HOM05D006001 ORTHO05D006714 1.9e-13 81.3 405 34.6
PGR042G0630 Punica granatum HOM05D006001 ORTHO05D006714 2.5e-13 80.9 416 26.2
MBI16_g12475_MAGBIO Magnolia biondii HOM05D006001 ORTHO05D006714 3.2e-13 80.5 412 26.0
Nn5g29866 Nelumbo nucifera HOM05D006001 ORTHO05D006714 5.5e-13 79.7 124 43.5
Nn6g34170 Nelumbo nucifera HOM05D006001 ORTHO05D006714 5.5e-13 79.7 401 35.2
CSS0018086 Camellia sinensis var. sinensis HOM05D006001 ORTHO05D006714 1.2e-12 78.6 137 40.9
Carub.0007s1657 Capsella rubella HOM05D006001 ORTHO05D006714 6.1e-12 76.3 420 27.1
AT4G24500 Arabidopsis thaliana HOM05D006001 ORTHO05D006714 1.0e-11 75.5 414 26.6
PGSC0003DMG400002050 Solanum tuberosum HOM05D006001 ORTHO05D006714 3.0e-11 73.9 414 37.2
A01p15870 Brassica napus HOM05D002298 ORTHO05D006714 4.0e-11 73.6 394 26.1
TWI12G0152 Tripterygium wilfordii HOM05D006001 ORTHO05D006714 5.2e-11 73.2 413 26.2
Aa31LG4G9600 Aethionema arabicum HOM05D006001 ORTHO05D006714 8.8e-11 72.4 404 25.2
Cc00_g15770 Coffea canephora HOM05D006001 ORTHO05D006714 8.8e-11 72.4 411 25.5
Oeu034401.1 Olea europaea HOM05D006001 ORTHO05D006714 8.8e-11 72.4 400 27.8
Rhsim07G0212300 Rhododendron simsii HOM05D006001 ORTHO05D006714 1.2e-10 72.0 139 38.1
Sed0021655 Sechium edule HOM05D006001 ORTHO05D006714 1.2e-10 72.0 95 44.2
Sp7g22490 Schrenkiella parvula HOM05D006001 ORTHO05D006714 1.5e-10 71.6 421 25.7
PSO170G4643 Papaver somniferum HOM05D006001 ORTHO05D006714 3.4e-10 70.5 103 48.5
BcaC09g50862 Brassica carinata HOM05D006001 ORTHO05D006714 4.4e-10 70.1 419 26.7
BolC7t45854H Brassica oleracea HOM05D006001 ORTHO05D006714 4.4e-10 70.1 179 38.0
THA.LOC104799788 Tarenaya hassleriana HOM05D006001 ORTHO05D006714 5.7e-10 69.7 143 37.8
Thhalv10025760m.g Eutrema salsugineum HOM05D006001 ORTHO05D006714 7.5e-10 69.3 420 26.4
BraA01t01521Z Brassica rapa HOM05D002298 ORTHO05D006714 9.8e-10 68.9 401 27.7
CARHR231890 Cardamine hirsuta HOM05D006001 ORTHO05D006714 9.8e-10 68.9 182 35.7
Lj4A738G22 Lonicera japonica HOM05D006001 ORTHO05D006714 9.8e-10 68.9 422 41.0
RcHm_v2.0_Chr7g0235791 Rosa chinensis HOM05D006001 ORTHO05D006714 9.8e-10 68.9 420 45.7
Lsat_1_v5_gn_3_133380 Lactuca sativa HOM05D006001 ORTHO05D006714 1.3e-09 68.6 427 29.7
SHI11238 Sapria himalayana HOM05D006001 ORTHO05D006714 1.3e-09 68.6 116 40.5
Nitab4.5_0019796g0010 Nicotiana tabacum HOM05D006001 ORTHO05D006714 1.7e-09 68.2 111 42.3
Sopen12g030020 Solanum pennellii HOM05D006001 ORTHO05D006714 1.7e-09 68.2 416 36.1
C01p19810 Brassica napus HOM05D002298 ORTHO05D006714 2.8e-09 67.4 418 27.0
Actinidia19626 Actinidia chinensis HOM05D006001 ORTHO05D006714 4.8e-09 66.6 413 36.6
CDE06G1720 Ceratophyllum demersum HOM05D006001 ORTHO05D006714 6.3e-09 66.2 121 39.7
BolC1t01909H Brassica oleracea HOM05D002298 ORTHO05D006714 8.3e-09 65.9 417 26.1
SGA_v2.0_scaffold20G09128 Striga asiatica HOM05D006001 ORTHO05D006714 1.1e-08 65.5 420 25.5
SGA_v2.0_scaffold24G10238 Striga asiatica HOM05D006001 ORTHO05D006714 1.4e-08 65.1 417 26.6
EL10Ac1g00506 Beta vulgaris HOM05D034668 ORTHO05D006714 1.8e-08 64.7 191 33.0
DCAR_023481 Daucus carota HOM05D006001 ORTHO05D006714 1.8e-08 64.7 425 28.9
C07p53620 Brassica napus HOM05D006001 ORTHO05D006714 4.1e-08 63.5 185 35.1
Sopen04g030170 Solanum pennellii HOM05D006001 ORTHO05D006714 4.1e-08 63.5 409 26.9
BcaC06g32880 Brassica carinata HOM05D006001 ORTHO05D006714 5.4e-08 63.2 185 35.1
FAN08G3160 Fragaria x ananassa HOM05D006001 ORTHO05D006714 7.0e-08 62.8 442 42.5
SalBow7G4402 Salvia bowleyana HOM05D006001 ORTHO05D006714 7.0e-08 62.8 87 40.2
PGSC0003DMG400009339 Solanum tuberosum HOM05D006001 ORTHO05D006714 9.1e-08 62.4 407 26.5
Solyc12g087990.3 Solanum lycopersicum HOM05D006001 ORTHO05D006714 1.2e-07 62.0 210 29.5
BraA03t14592Z Brassica rapa HOM05D006001 ORTHO05D006714 2.7e-07 60.8 412 26.2
A03p55330 Brassica napus HOM05D006001 ORTHO05D006714 3.5e-07 60.5 397 28.0
Solyc04g076410.3 Solanum lycopersicum HOM05D006001 ORTHO05D006714 3.5e-07 60.5 409 26.4
FvH4_5g34870 Fragaria vesca HOM05D006001 ORTHO05D006714 4.5e-07 60.1 193 33.7
Migut.C00706 Erythranthe guttata HOM05D006001 ORTHO05D006714 5.9e-07 59.7 131 38.9
PSO210G5625 Papaver somniferum HOM05D006001 ORTHO05D006714 7.7e-07 59.3 416 26.2
HanXRQChr03g0093751 Helianthus annuus HOM05D006001 ORTHO05D006714 2.9e-06 57.4 409 27.6
Aqoxy5G01371 Aquilegia oxysepala HOM05D006001 ORTHO05D006714 5.0e-06 56.6 164 32.3
SEGI_15482 Sequoiadendron giganteum HOM05D006001 ORTHO05D006714 6.5e-06 56.2 187 29.9


User provided reference genes

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