Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G159900 Phaseolus vulgaris HOM05D004719 ORTHO05D005519 3.8e-111 404.8 200 100.0
Lj1g0014949 Lotus japonicus HOM05D004719 ORTHO05D005519 4.8e-74 281.6 214 71.5
arahy.Tifrunner.gnm1.ann1.A0EQPQ Arachis hypogaea HOM05D004719 ORTHO05D005519 4.2e-70 268.5 199 69.3
arahy.Tifrunner.gnm1.ann1.YXX8CM Arachis hypogaea HOM05D004719 ORTHO05D005519 1.7e-66 256.5 199 68.3
Lalb_Chr23g0271411 Lupinus albus HOM05D004719 ORTHO05D005519 2.6e-64 249.2 213 62.9
Duzib084G0320 Durio zibethinus HOM05D004719 ORTHO05D005519 3.5e-64 248.8 227 63.9
Thecc.03G191400 Theobroma cacao HOM05D004719 ORTHO05D005519 1.0e-63 247.3 225 60.9
TWI14G0874 Tripterygium wilfordii HOM05D004719 ORTHO05D005519 5.0e-63 245.0 220 62.3
vmacro10099 Vaccinium macrocarpon HOM05D004719 ORTHO05D005519 1.5e-62 243.4 223 61.4
Gohir.A11G013800 Gossypium hirsutum HOM05D004719 ORTHO05D005519 3.2e-62 242.3 222 63.1
TAR333G0005 Trochodendron aralioides HOM05D004719 ORTHO05D005519 9.4e-62 240.7 222 61.3
Psat5g080520 Pisum sativum HOM05D004719 ORTHO05D005519 3.6e-61 238.8 208 62.0
Glyma.04G239200 Glycine max HOM05D004719 ORTHO05D005519 4.7e-61 238.4 205 64.4
Gohir.D11G014000 Gossypium hirsutum HOM05D004719 ORTHO05D005519 1.0e-60 237.3 222 61.7
TWI23G0029 Tripterygium wilfordii HOM05D004719 ORTHO05D005519 1.0e-60 237.3 220 60.5
TAR374G0131 Trochodendron aralioides HOM05D004719 ORTHO05D005519 1.0e-60 237.3 218 61.5
Sed0016292 Sechium edule HOM05D004719 ORTHO05D005519 1.4e-60 236.9 212 60.4
Dinv35299 Davidia involucrata HOM05D004719 ORTHO05D005519 1.8e-60 236.5 220 60.5
Duzib068G0142 Durio zibethinus HOM05D004719 ORTHO05D005519 1.8e-60 236.5 219 61.6
Gorai.007G014400 Gossypium raimondii HOM05D004719 ORTHO05D005519 1.8e-60 236.5 223 61.4
Hma1.2p1_1891F.1_g306690 Hydrangea macrophylla HOM05D004719 ORTHO05D005519 2.6e-59 232.6 219 59.4
MD07G1283600 Malus domestica HOM05D004719 ORTHO05D005519 2.6e-59 232.6 228 57.0
Medtr3g090640 Medicago truncatula HOM05D004719 ORTHO05D005519 2.6e-59 232.6 209 60.8
Phvul.009G136700 Phaseolus vulgaris HOM05D004719 ORTHO05D005519 7.5e-59 231.1 206 62.1
Rhsim09G0203300 Rhododendron simsii HOM05D004719 ORTHO05D005519 1.3e-58 230.3 242 56.6
Nn1g01780 Nelumbo nucifera HOM05D004719 ORTHO05D005519 1.7e-58 229.9 219 60.7
Glyma.06G124600 Glycine max HOM05D004719 ORTHO05D005519 2.2e-58 229.6 201 62.7
Nn7g37372 Nelumbo nucifera HOM05D004719 ORTHO05D005519 4.8e-58 228.4 222 58.6
TWI39G0409 Tripterygium wilfordii HOM05D004719 ORTHO05D005519 4.8e-58 228.4 220 60.0
PSO170G2586 Papaver somniferum HOM05D004719 ORTHO05D005519 6.3e-58 228.0 218 58.7
Ah.07g206120 Amaranthus hybridus HOM05D004719 ORTHO05D005519 1.4e-57 226.9 202 61.9
Sed0024250 Sechium edule HOM05D004719 ORTHO05D005519 2.4e-57 226.1 218 57.3
PSO063G4149 Papaver somniferum HOM05D004719 ORTHO05D005519 3.1e-57 225.7 218 57.8
MSTRG.8686 Avicennia marina HOM05D004719 ORTHO05D005519 5.3e-57 224.9 227 54.6
Manes.06G156000 Manihot esculenta HOM05D004719 ORTHO05D005519 5.3e-57 224.9 199 62.3
Hma1.2p1_0327F.1_g126670 Hydrangea macrophylla HOM05D004719 ORTHO05D005519 7.0e-57 224.6 220 58.2
SGA_v2.0_scaffold192G40593 Striga asiatica HOM05D004719 ORTHO05D005519 1.2e-56 223.8 229 55.9
Prupe.2G306000 Prunus persica HOM05D004719 ORTHO05D005519 1.6e-56 223.4 229 57.2
MD01G1213900 Malus domestica HOM05D004719 ORTHO05D005519 2.0e-56 223.0 230 56.5
Actinidia31859 Actinidia chinensis HOM05D004719 ORTHO05D005519 3.5e-56 222.2 220 57.7
CSS0006896 Camellia sinensis var. sinensis HOM05D004719 ORTHO05D005519 3.5e-56 222.2 224 58.0
CSS0042605 Camellia sinensis var. sinensis HOM05D004719 ORTHO05D005519 3.5e-56 222.2 224 58.0
Duzib205G0172 Durio zibethinus HOM05D004719 ORTHO05D005519 3.5e-56 222.2 224 58.9
THA.LOC104800282 Tarenaya hassleriana HOM05D004719 ORTHO05D005519 3.5e-56 222.2 223 56.1
Cfa016352 Carpinus fangiana HOM05D004719 ORTHO05D005519 7.7e-56 221.1 233 56.2
CANSAT21G2536 Cannabis sativa HOM05D004719 ORTHO05D005519 1.0e-55 220.7 223 57.8
CiPaw.06G006600 Carya illinoinensis HOM05D004719 ORTHO05D005519 1.0e-55 220.7 205 60.5
CsaV3_5G000780 Cucumis sativus L. HOM05D004719 ORTHO05D005519 1.3e-55 220.3 225 55.1
SalBow4G0130 Salvia bowleyana HOM05D004719 ORTHO05D005519 1.3e-55 220.3 228 54.4
Ca_16667_v3 Cicer arietinum L. HOM05D004719 ORTHO05D005519 2.2e-55 219.5 208 57.7
VMungo1309G2489 Vigna mungo HOM05D004719 ORTHO05D005519 2.9e-55 219.2 239 53.1
Sp6g15480 Schrenkiella parvula HOM05D004719 ORTHO05D005519 3.8e-55 218.8 228 56.6
Haze_00101 Corylus avellana HOM05D004719 ORTHO05D005519 5.0e-55 218.4 239 54.8
Aa31LG3G9210 Aethionema arabicum HOM05D004719 ORTHO05D005519 8.5e-55 217.6 224 53.6
SalBow4G0254 Salvia bowleyana HOM05D004719 ORTHO05D005519 1.1e-54 217.2 228 53.9
Potri.012G033300 Populus trichocarpa HOM05D004719 ORTHO05D005519 1.5e-54 216.9 222 56.8
MELO3C005862.2 Cucumis melo HOM05D004719 ORTHO05D005519 2.5e-54 216.1 224 54.5
ClCG01G000680 Citrullus lanatus HOM05D004719 ORTHO05D005519 3.2e-54 215.7 251 51.8
Atru.chr1.287 Acer truncatum HOM05D004719 ORTHO05D005519 1.6e-53 213.4 230 51.7
Eucgr.A02672 Eucalyptus grandis HOM05D004719 ORTHO05D005519 2.1e-53 213.0 184 59.8
BcaB08g35695 Brassica carinata HOM05D004719 ORTHO05D005519 2.7e-53 212.6 219 54.8
BcaNung06632 Brassica carinata HOM05D004719 ORTHO05D005519 2.7e-53 212.6 217 55.3
C03p17720 Brassica napus HOM05D004719 ORTHO05D005519 2.7e-53 212.6 217 55.3
BraA03t10813Z Brassica rapa HOM05D004719 ORTHO05D005519 2.7e-53 212.6 222 54.5
Ciclev10005830m.g Citrus clementina HOM05D004719 ORTHO05D005519 2.7e-53 212.6 223 53.8
A03p15190 Brassica napus HOM05D004719 ORTHO05D005519 3.6e-53 212.2 222 54.5
Cc02_g02010 Coffea canephora HOM05D004719 ORTHO05D005519 3.6e-53 212.2 219 55.7
Thhalv10014603m.g Eutrema salsugineum HOM05D004719 ORTHO05D005519 3.6e-53 212.2 226 54.9
PGR042G1451 Punica granatum HOM05D004719 ORTHO05D005519 6.1e-53 211.5 216 54.2
AL8G28040 Arabidopsis lyrata HOM05D004719 ORTHO05D005519 1.0e-52 210.7 221 55.7
Oeu009271.1 Olea europaea HOM05D004719 ORTHO05D005519 1.0e-52 210.7 229 54.6
Hma1.2p1_0142F.1_g064100 Hydrangea macrophylla HOM05D004719 ORTHO05D005519 1.4e-52 210.3 235 53.2
Oeu049096.1 Olea europaea HOM05D004719 ORTHO05D005519 1.4e-52 210.3 210 56.7
THA.LOC104811935 Tarenaya hassleriana HOM05D004719 ORTHO05D005519 1.4e-52 210.3 223 53.4
COL.COLO4_08254 Corchorus olitorius HOM05D004719 ORTHO05D005519 1.8e-52 209.9 158 67.7
Aqoxy5G04028 Aquilegia oxysepala HOM05D004719 ORTHO05D005519 3.0e-52 209.1 221 54.3
EL10Ac3g05361 Beta vulgaris HOM05D004719 ORTHO05D005519 4.0e-52 208.8 203 57.1
VMungo0647G2259 Vigna mungo HOM05D004719 ORTHO05D005519 4.0e-52 208.8 136 78.7
QL09p011210 Quercus lobata HOM05D004719 ORTHO05D005519 8.8e-52 207.6 233 51.9
BolC3t14182H Brassica oleracea HOM05D004719 ORTHO05D005519 1.5e-51 206.8 229 52.8
Cpa.g.sc3.37 Carica papaya HOM05D004719 ORTHO05D005519 5.7e-51 204.9 225 53.8
Sc13g0009490 Simmondsia chinensis HOM05D004719 ORTHO05D005519 5.7e-51 204.9 151 66.2
PGR142G1718 Punica granatum HOM05D004719 ORTHO05D005519 7.5e-51 204.5 210 55.7
ECA238G1719 Erigeron canadensis HOM05D000316 ORTHO05D001978 9.8e-51 204.1 199 57.8
Potri.015G023600 Populus trichocarpa HOM05D004719 ORTHO05D005519 1.3e-50 203.8 174 61.5
RcHm_v2.0_Chr1g0379961 Rosa chinensis HOM05D004719 ORTHO05D005519 1.3e-50 203.8 234 51.7
TPR.G33870 Trifolium pratense HOM05D004719 ORTHO05D005519 1.7e-50 203.4 200 58.5
BcaC01g06246 Brassica carinata HOM05D004719 ORTHO05D005519 4.8e-50 201.8 201 55.7
AUR62021055 Chenopodium quinoa HOM05D004719 ORTHO05D005519 4.8e-50 201.8 194 56.2
Gohir.A09G183300 Gossypium hirsutum HOM05D004719 ORTHO05D005519 4.8e-50 201.8 189 57.7
HanXRQChr07g0207131 Helianthus annuus HOM05D004719 ORTHO05D005519 6.3e-50 201.4 201 55.7
PGSC0003DMG400009067 Solanum tuberosum HOM05D004719 ORTHO05D005519 6.3e-50 201.4 223 50.7
AUR62031477 Chenopodium quinoa HOM05D004719 ORTHO05D005519 8.3e-50 201.1 197 55.8
unitig_747.g21854 Utricularia gibba HOM05D004719 ORTHO05D005519 1.8e-49 199.9 214 52.8
AT5G53330 Arabidopsis thaliana HOM05D004719 ORTHO05D005519 2.4e-49 199.5 222 51.8
Gohir.D09G178000 Gossypium hirsutum HOM05D004719 ORTHO05D005519 2.4e-49 199.5 193 57.5
Nitab4.5_0001331g0150 Nicotiana tabacum HOM05D004719 ORTHO05D005519 5.4e-49 198.4 221 50.7
CAN.G204.6 Capsicum annuum HOM05D004719 ORTHO05D005519 7.0e-49 198.0 159 59.7
Migut.F00251 Erythranthe guttata HOM05D004719 ORTHO05D005519 7.0e-49 198.0 196 56.6
FAN06G4721 Fragaria x ananassa HOM05D004719 ORTHO05D005519 7.0e-49 198.0 233 47.2
Lsat_1_v5_gn_2_134381 Lactuca sativa HOM05D004719 ORTHO05D005519 9.1e-49 197.6 218 53.7
CARHR266390 Cardamine hirsuta HOM05D004719 ORTHO05D005519 1.6e-48 196.8 227 52.4
MSTRG.27052 Avicennia marina HOM05D004719 ORTHO05D005519 2.0e-48 196.4 237 51.5
Carub.0008s1351 Capsella rubella HOM05D004719 ORTHO05D005519 2.7e-48 196.1 229 52.0
Gorai.006G200100 Gossypium raimondii HOM05D004719 ORTHO05D005519 2.7e-48 196.1 193 57.0
HanXRQChr14g0462731 Helianthus annuus HOM05D004719 ORTHO05D005519 2.7e-48 196.1 222 53.2
BcaC04g20465 Brassica carinata HOM05D004719 ORTHO05D005519 3.5e-48 195.7 231 50.2
C09p43180 Brassica napus HOM05D004719 ORTHO05D005519 3.5e-48 195.7 231 50.2
DCAR_020296 Daucus carota HOM05D004719 ORTHO05D005519 4.5e-48 195.3 200 53.0
Solyc03g007520.3 Solanum lycopersicum HOM05D004719 ORTHO05D005519 4.5e-48 195.3 215 51.2
Sopen03g003480 Solanum pennellii HOM05D004719 ORTHO05D005519 4.5e-48 195.3 215 51.2
ATR0661G055 Amborella trichopoda HOM05D004719 ORTHO05D005519 5.9e-48 194.9 215 54.9
Nitab4.5_0000472g0190 Nicotiana tabacum HOM05D004719 ORTHO05D005519 5.9e-48 194.9 221 49.8
Peaxi162Scf00904g00473 Petunia axillaris HOM05D004719 ORTHO05D005519 5.9e-48 194.9 218 50.0
FAN10G3127 Fragaria x ananassa HOM05D004719 ORTHO05D005519 7.7e-48 194.5 236 47.5
FAN03G2418 Fragaria x ananassa HOM05D004719 ORTHO05D005519 1.0e-47 194.1 237 47.3
A10p10840 Brassica napus HOM05D004719 ORTHO05D005519 1.3e-47 193.7 214 51.4
BraA10t43168Z Brassica rapa HOM05D004719 ORTHO05D005519 1.3e-47 193.7 218 50.5
FAN01G1522 Fragaria x ananassa HOM05D004719 ORTHO05D005519 1.7e-47 193.4 242 46.3
BolC9t57191H Brassica oleracea HOM05D004719 ORTHO05D005519 5.0e-47 191.8 237 48.5
FvH4_7g30890 Fragaria vesca HOM05D004719 ORTHO05D005519 2.5e-46 189.5 235 46.4
HPP92_008641 Vanilla planifolia HOM05D004719 ORTHO05D005519 2.5e-46 189.5 153 60.8
CAN.G108.16 Capsicum annuum HOM05D004719 ORTHO05D005519 3.3e-46 189.1 167 56.3
CDE08G1019 Ceratophyllum demersum HOM05D004719 ORTHO05D005519 4.0e-44 182.2 189 53.4
BcaNung07347 Brassica carinata HOM05D004719 ORTHO05D005519 2.6e-43 179.5 161 55.9
Actinidia34185 Actinidia chinensis HOM05D004719 ORTHO05D005519 3.4e-43 179.1 145 64.8
Os06g0160400 Oryza sativa ssp. japonica HOM05D004719 ORTHO05D005519 5.7e-43 178.3 231 44.2
Peaxi162Scf00618g00530 Petunia axillaris HOM05D004719 ORTHO05D005519 5.7e-43 178.3 150 58.0
PGSC0003DMG400028901 Solanum tuberosum HOM05D004719 ORTHO05D005519 5.7e-43 178.3 200 50.5
MBI06_g04286_MAGBIO Magnolia biondii HOM05D004719 ORTHO05D005519 1.4e-41 173.7 219 47.9
Manes.14G019414 Manihot esculenta HOM05D004719 ORTHO05D005519 1.4e-41 173.7 176 58.0
Lj1C1011G7 Lonicera japonica HOM05D004719 ORTHO05D005519 1.8e-41 173.3 130 67.7
PGR142G4196 Punica granatum HOM05D004719 ORTHO05D005519 2.0e-40 169.9 208 49.5
Zm00001eb376120 Zea mays HOM05D004719 ORTHO05D005519 1.7e-39 166.8 245 42.9
CDE02G1124 Ceratophyllum demersum HOM05D004719 ORTHO05D005519 1.1e-38 164.1 191 47.6
GSVIVG01028725001 Vitis vinifera HOM05D004719 ORTHO05D005519 7.5e-35 151.4 138 58.0
FAN06G1194 Fragaria x ananassa HOM05D004719 ORTHO05D005519 2.2e-34 149.8 142 54.2
Mapoly0050s0076 Marchantia polymorpha HOM05D004719 ORTHO05D005519 1.8e-33 146.7 203 44.8
AagrBONN_evm.TU.Sc2ySwM_340.345 Anthoceros agrestis HOM05D004719 ORTHO05D005519 1.5e-30 137.1 203 41.4
BcaC01g06237 Brassica carinata HOM05D001465 ORTHO05D001434 5.0e-23 112.1 162 48.1
Pp3c1_11420 Physcomitrium patens HOM05D004719 ORTHO05D005519 6.6e-23 111.7 195 34.4
SEGI_18632 Sequoiadendron giganteum HOM05D004719 ORTHO05D005519 8.6e-23 111.3 158 43.0
C03p17810 Brassica napus HOM05D004719 ORTHO05D005519 4.0e-20 102.4 180 42.8
Dinv28349 Davidia involucrata HOM05D004719 ORTHO05D005519 1.3e-18 97.4 73 65.8
FAN18G3526 Fragaria x ananassa HOM05D006854 ORTHO05D210570 1.7e-18 97.1 90 55.6
BolC3t14188H Brassica oleracea HOM05D004719 ORTHO05D005519 2.1e-16 90.1 80 60.0
QL04p064474 Quercus lobata HOM05D000013 ORTHO05D000011 8.6e-15 84.7 83 53.0
FvH4_7g16570 Fragaria vesca HOM05D004719 ORTHO05D005519 1.5e-14 84.0 55 69.1
FAN01G1848 Fragaria x ananassa HOM05D002077 ORTHO05D000818 5.6e-14 82.0 57 66.7
Solyc06g036500.1 Solanum lycopersicum HOM05D004719 ORTHO05D005519 2.0e-11 73.6 90 47.8
CBR_g83324 Chara braunii HOM05D004719 ORTHO05D005519 1.7e-10 70.5 73 46.6
FvH4_6g34200 Fragaria vesca HOM05D004719 ORTHO05D005519 2.1e-08 63.5 50 58.0
CBR_g84869 Chara braunii HOM05D004719 ORTHO05D005519 3.5e-08 62.8 107 39.3
CDE09G0250 Ceratophyllum demersum HOM05D004719 ORTHO05D005519 3.9e-07 59.3 53 52.8
FAN16G3662 Fragaria x ananassa HOM05D004719 ORTHO05D005519 8.7e-07 58.2 36 66.7
MCO03G325 Micromonas commoda HOM05D004719 ORTHO05D005519 1.5e-06 57.4 164 28.7
Hund30245 Selenicereus undatus HOM05D004719 ORTHO05D005519 1.5e-06 57.4 58 60.3


User provided reference genes

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