Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G100300 Phaseolus vulgaris HOM05D008034 ORTHO05D010051 1.0e-110 403.3 189 100.0
Glyma.18G177500 Glycine max HOM05D008034 ORTHO05D010051 2.4e-99 365.5 189 90.5
Glyma.08G359000 Glycine max HOM05D008034 ORTHO05D010051 1.9e-88 329.3 187 85.0
Psat3g140960 Pisum sativum HOM05D008034 ORTHO05D010051 2.8e-84 315.5 186 78.5
VMungo1383G3175 Vigna mungo HOM05D008034 ORTHO05D010051 1.8e-83 312.8 193 80.3
Medtr7g060450 Medicago truncatula HOM05D008034 ORTHO05D010051 1.2e-82 310.1 188 78.2
arahy.Tifrunner.gnm1.ann1.YB7TH1 Arachis hypogaea HOM05D008034 ORTHO05D010051 1.3e-81 306.6 183 78.1
arahy.Tifrunner.gnm1.ann1.JRZ5DE Arachis hypogaea HOM05D008034 ORTHO05D010051 2.9e-81 305.4 183 77.0
Lalb_Chr03g0035081 Lupinus albus HOM05D008034 ORTHO05D010051 1.9e-80 302.8 185 78.4
Lalb_Chr03g0042121 Lupinus albus HOM05D008034 ORTHO05D010051 2.1e-79 299.3 185 76.8
QL01p035245 Quercus lobata HOM05D008034 ORTHO05D010051 2.3e-78 295.8 184 72.8
Manes.11G137800 Manihot esculenta HOM05D008034 ORTHO05D010051 9.2e-75 283.9 177 73.4
Atru.chr3.3772 Acer truncatum HOM05D008034 ORTHO05D010051 1.6e-74 283.1 182 72.0
Prupe.6G089000 Prunus persica HOM05D008034 ORTHO05D010051 8.6e-73 277.3 179 71.5
Actinidia37272 Actinidia chinensis HOM05D008034 ORTHO05D010051 1.1e-72 276.9 178 70.2
TWI75G0515 Tripterygium wilfordii HOM05D008034 ORTHO05D010051 1.2e-71 273.5 186 66.7
Actinidia27676 Actinidia chinensis HOM05D008034 ORTHO05D010051 2.1e-71 272.7 178 70.2
Ciclev10029356m.g Citrus clementina HOM05D008034 ORTHO05D010051 4.7e-71 271.6 186 68.8
Duzib170G0117 Durio zibethinus HOM05D008034 ORTHO05D010051 1.8e-70 269.6 175 68.6
Thecc.09G333100 Theobroma cacao HOM05D008034 ORTHO05D010051 1.8e-70 269.6 186 67.2
GSVIVG01025076001 Vitis vinifera HOM05D008034 ORTHO05D010051 5.2e-70 268.1 166 71.1
FvH4_3g34350 Fragaria vesca HOM05D008034 ORTHO05D010051 1.5e-69 266.5 173 69.4
Hma1.2p1_0035F.1_g021690 Hydrangea macrophylla HOM05D008034 ORTHO05D010051 2.6e-69 265.8 153 75.8
Gohir.D07G098700 Gossypium hirsutum HOM05D008034 ORTHO05D010051 4.4e-69 265.0 179 64.8
Gorai.001G106200 Gossypium raimondii HOM05D008034 ORTHO05D010051 4.4e-69 265.0 179 64.8
Gohir.A07G094200 Gossypium hirsutum HOM05D008034 ORTHO05D010051 5.8e-69 264.6 179 64.8
Cpa.g.sc139.12 Carica papaya HOM05D008034 ORTHO05D010051 1.7e-68 263.1 184 65.2
CSS0025126 Camellia sinensis var. sinensis HOM05D008034 ORTHO05D010051 2.2e-68 262.7 151 77.5
CAN.G84.9 Capsicum annuum HOM05D008034 ORTHO05D010051 3.7e-68 261.9 161 72.7
Nitab4.5_0007786g0020 Nicotiana tabacum HOM05D008034 ORTHO05D010051 1.4e-67 260.0 161 72.7
COL.COLO4_18407 Corchorus olitorius HOM05D008034 ORTHO05D010051 3.2e-67 258.8 179 66.5
Cfa011409 Carpinus fangiana HOM05D008034 ORTHO05D010051 7.0e-67 257.7 184 65.2
TAR623G1523 Trochodendron aralioides HOM05D008034 ORTHO05D010051 9.2e-67 257.3 197 61.4
Rhsim13G0089800 Rhododendron simsii HOM05D001089 ORTHO05D000920 1.2e-66 256.9 160 71.9
CiPaw.13G103300 Carya illinoinensis HOM05D008034 ORTHO05D010051 1.6e-66 256.5 185 64.3
RhsimUnG0139800 Rhododendron simsii HOM05D001089 ORTHO05D000920 1.6e-66 256.5 160 71.9
Nitab4.5_0002380g0020 Nicotiana tabacum HOM05D008034 ORTHO05D010051 6.6e-65 251.1 146 75.3
Aqoxy4G03114 Aquilegia oxysepala HOM05D008034 ORTHO05D010051 1.1e-64 250.4 159 67.9
ClCG02G020510 Citrullus lanatus HOM05D008034 ORTHO05D010051 1.5e-64 250.0 175 66.3
Solyc11g072765.1 Solanum lycopersicum HOM05D008034 ORTHO05D010051 2.5e-64 249.2 149 71.8
Nn2g10576 Nelumbo nucifera HOM05D008034 ORTHO05D010051 2.8e-63 245.7 165 64.8
FAN11G2200 Fragaria x ananassa HOM05D008034 ORTHO05D010051 2.3e-62 242.7 157 70.1
CsaV3_6G021950 Cucumis sativus L. HOM05D008034 ORTHO05D010051 5.2e-62 241.5 149 71.1
HanXRQChr08g0230621 Helianthus annuus HOM05D008034 ORTHO05D010051 5.2e-62 241.5 173 62.4
Haze_23982 Corylus avellana HOM05D008034 ORTHO05D010051 1.2e-61 240.4 152 69.7
MELO3C025715.2 Cucumis melo HOM05D008034 ORTHO05D010051 7.5e-61 237.7 144 72.9
Eucgr.B02437 Eucalyptus grandis HOM05D008034 ORTHO05D010051 7.5e-61 237.7 173 64.7
ECA247G3899 Erigeron canadensis HOM05D008034 ORTHO05D010051 8.3e-60 234.2 150 66.0
Lsat_1_v5_gn_9_21900 Lactuca sativa HOM05D008034 ORTHO05D010051 2.4e-59 232.6 150 66.7
PSO724G0148 Papaver somniferum HOM05D008034 ORTHO05D010051 7.0e-59 231.1 174 58.6
PSO729G0256 Papaver somniferum HOM05D008034 ORTHO05D010051 1.2e-58 230.3 174 59.2
TPR.G23264 Trifolium pratense HOM05D008034 ORTHO05D010051 1.2e-58 230.3 140 77.1
Sed0016706 Sechium edule HOM05D008034 ORTHO05D010051 1.6e-58 229.9 150 68.0
CANSAT54G0614 Cannabis sativa HOM05D008034 ORTHO05D010051 1.1e-56 223.8 181 55.8
EL10Ac7g15930 Beta vulgaris HOM05D008034 ORTHO05D010051 5.6e-56 221.5 152 61.8
ATR0594G086 Amborella trichopoda HOM05D008034 ORTHO05D010051 5.8e-53 211.5 155 59.4
AUR62009660 Chenopodium quinoa HOM05D008034 ORTHO05D010051 9.9e-53 210.7 152 60.5
Ah.15g096410 Amaranthus hybridus HOM05D008034 ORTHO05D010051 1.3e-52 210.3 147 59.9
PGR102G1024 Punica granatum HOM05D008034 ORTHO05D010051 3.7e-52 208.8 176 54.5
MBI14_g16339_MAGBIO Magnolia biondii HOM05D008034 ORTHO05D010051 7.8e-50 201.1 164 56.1
Dinv06338 Davidia involucrata HOM05D008034 ORTHO05D010051 2.4e-46 189.5 108 74.1
PSO416G0003 Papaver somniferum HOM05D008034 ORTHO05D010051 2.4e-46 189.5 128 64.8
Sc21g0005330 Simmondsia chinensis HOM05D008034 ORTHO05D010051 1.3e-41 173.7 112 63.4
AUR62001862 Chenopodium quinoa HOM05D008034 ORTHO05D010051 1.2e-37 160.6 152 49.3
Sopen11g030440 Solanum pennellii HOM05D008034 ORTHO05D010051 2.5e-32 142.9 81 71.6
SEGI_07630 Sequoiadendron giganteum HOM05D008034 ORTHO05D010051 1.6e-26 123.6 137 40.9
RcHm_v2.0_Chr1g0364691 Rosa chinensis HOM05D008034 ORTHO05D010051 3.5e-26 122.5 140 45.0
SEGI_26238 Sequoiadendron giganteum HOM05D008034 ORTHO05D010051 3.0e-25 119.4 146 42.5
SEGI_39089 Sequoiadendron giganteum HOM05D008034 ORTHO05D010051 3.0e-25 119.4 146 42.5
ATR0594G007 Amborella trichopoda HOM05D001120 ORTHO05D010051 6.7e-25 118.2 141 42.6
FAN06G2736 Fragaria x ananassa HOM05D001787 ORTHO05D007379 8.7e-25 117.9 140 43.6
FvH4_7g20661 Fragaria vesca HOM05D008034 ORTHO05D010051 1.5e-24 117.1 140 43.6
FAN03G1672 Fragaria x ananassa HOM05D001787 ORTHO05D007379 1.5e-24 117.1 140 43.6
FAN06G3907 Fragaria x ananassa HOM05D001787 ORTHO05D007379 1.5e-24 117.1 140 43.6
FAN10G0756 Fragaria x ananassa HOM05D001787 ORTHO05D007379 1.9e-24 116.7 140 43.6
MD07G1183300 Malus domestica HOM05D008034 ORTHO05D010051 1.9e-24 116.7 159 39.6
FAN01G1155 Fragaria x ananassa HOM05D001787 ORTHO05D007379 2.5e-24 116.3 140 43.6
FAN01G1685 Fragaria x ananassa HOM05D001787 ORTHO05D007379 2.5e-24 116.3 140 43.6
Prupe.2G222000 Prunus persica HOM05D001120 ORTHO05D010051 7.4e-24 114.8 139 44.6
Potri.010G214400 Populus trichocarpa HOM05D008034 ORTHO05D010051 2.1e-23 113.2 142 40.8
Nn2g10579 Nelumbo nucifera HOM05D001120 ORTHO05D010051 6.2e-23 111.7 136 43.4
Cpa.g.sc10.57 Carica papaya HOM05D001787 ORTHO05D007379 3.1e-22 109.4 155 36.1
TAR369G0105 Trochodendron aralioides HOM05D008034 ORTHO05D010051 9.0e-22 107.8 139 42.4
Manes.07G106000 Manihot esculenta HOM05D008034 ORTHO05D002447 1.5e-21 107.1 149 40.3
MBI14_g46136_MAGBIO Magnolia biondii HOM05D001120 ORTHO05D002447 8.4e-20 101.3 136 40.4
Aqoxy7G03703 Aquilegia oxysepala HOM05D001120 ORTHO05D002447 3.3e-16 89.4 137 32.1
SEGI_17058 Sequoiadendron giganteum HOM05D001120 ORTHO05D002447 9.6e-16 87.8 140 32.9
Hma1.2p1_0018F.1_g012390 Hydrangea macrophylla HOM05D001120 ORTHO05D002447 2.1e-15 86.7 135 32.6
Haze_16964 Corylus avellana HOM05D008034 ORTHO05D010051 8.2e-15 84.7 150 32.7
Sc18g0000610 Simmondsia chinensis HOM05D001120 ORTHO05D002447 1.4e-14 84.0 141 31.2
Cc06_g08490 Coffea canephora HOM05D001120 ORTHO05D002447 2.4e-14 83.2 134 31.3
Glyma.10G242000 Glycine max HOM05D001120 ORTHO05D002447 2.4e-14 83.2 163 30.1
TPR.G26127 Trifolium pratense HOM05D001120 ORTHO05D002447 2.4e-14 83.2 138 29.0
Cc04_g04230 Coffea canephora HOM05D001120 ORTHO05D002447 3.1e-14 82.8 139 31.7
TAR645G0006 Trochodendron aralioides HOM05D001120 ORTHO05D002447 3.1e-14 82.8 142 27.5
Psat6g203680 Pisum sativum HOM05D001120 ORTHO05D002447 4.0e-14 82.4 138 29.7
Medtr1g102420 Medicago truncatula HOM05D001120 ORTHO05D002447 5.3e-14 82.0 138 29.0
Phvul.007G063600 Phaseolus vulgaris HOM05D001120 ORTHO05D002447 6.9e-14 81.6 154 29.9
Cpa.g.sc75.26 Carica papaya HOM05D001120 ORTHO05D002447 9.0e-14 81.3 133 30.8
Nn2g12032 Nelumbo nucifera HOM05D001120 ORTHO05D002447 9.0e-14 81.3 134 32.1
PGR042G1649 Punica granatum HOM05D001120 ORTHO05D002447 1.5e-13 80.5 141 29.8
Ca_10832_v3 Cicer arietinum L. HOM05D001120 ORTHO05D002447 2.0e-13 80.1 138 28.3
Aqoxy7G02184 Aquilegia oxysepala HOM05D001120 ORTHO05D002447 2.6e-13 79.7 131 29.8
Sopen01g046430 Solanum pennellii HOM05D001120 ORTHO05D002447 3.4e-13 79.3 133 34.6
TAR383G0469 Trochodendron aralioides HOM05D002280 ORTHO05D002322 3.4e-13 79.3 136 30.1
VMungo0720G0371 Vigna mungo HOM05D001120 ORTHO05D002447 3.4e-13 79.3 131 31.3
Lalb_Chr06g0160841 Lupinus albus HOM05D001120 ORTHO05D002447 5.8e-13 78.6 144 29.2
CDE06G2009 Ceratophyllum demersum HOM05D001120 ORTHO05D002447 7.6e-13 78.2 140 30.7
GSVIVG01017309001 Vitis vinifera HOM05D003762 ORTHO05D004374 7.6e-13 78.2 168 31.0
Solyc01g104020.2 Solanum lycopersicum HOM05D001120 ORTHO05D002447 1.3e-12 77.4 174 25.9
PGSC0003DMG400023798 Solanum tuberosum HOM05D001120 ORTHO05D002447 2.2e-12 76.6 133 28.6
QL01p011565 Quercus lobata HOM05D001120 ORTHO05D002447 2.9e-12 76.3 134 29.9
QL05p028937 Quercus lobata HOM05D001120 ORTHO05D002447 2.9e-12 76.3 134 29.9
MD00G1023000 Malus domestica HOM05D001120 ORTHO05D002447 3.8e-12 75.9 132 27.3
MBI04_g38656_MAGBIO Magnolia biondii HOM05D001120 ORTHO05D002447 4.9e-12 75.5 132 29.5
CAN.G798.15 Capsicum annuum HOM05D001120 ORTHO05D002447 8.4e-12 74.7 133 28.6
Sopen01g046420 Solanum pennellii HOM05D001120 ORTHO05D002447 8.4e-12 74.7 133 28.6
TWI18G0686 Tripterygium wilfordii HOM05D001120 ORTHO05D002447 8.4e-12 74.7 133 29.3
Phvul.004G125300 Phaseolus vulgaris HOM05D001120 ORTHO05D002447 1.4e-11 73.9 159 27.0
CAN.G798.16 Capsicum annuum HOM05D001120 ORTHO05D002447 1.9e-11 73.6 133 29.3
PGSC0003DMG400023797 Solanum tuberosum HOM05D001120 ORTHO05D002447 1.9e-11 73.6 133 33.1
VMungo0464G0837 Vigna mungo HOM05D001120 ORTHO05D002447 7.1e-11 71.6 159 26.4
Psat1g115720 Pisum sativum HOM05D001120 ORTHO05D002447 9.3e-11 71.2 138 28.3
Lalb_Chr03g0033001 Lupinus albus HOM05D001120 ORTHO05D002447 1.2e-10 70.9 140 27.9
Medtr0050s0240 Medicago truncatula HOM05D001120 ORTHO05D002447 1.2e-10 70.9 142 28.2
Lj2g0018359 Lotus japonicus HOM05D001120 ORTHO05D002447 1.6e-10 70.5 138 28.3
SEGI_18751 Sequoiadendron giganteum HOM05D018424 ORTHO05D010051 2.1e-10 70.1 136 25.7
MELO3C017889.2 Cucumis melo HOM05D001120 ORTHO05D002447 2.7e-10 69.7 133 26.3
CsaV3_4G001510 Cucumis sativus L. HOM05D001120 ORTHO05D002447 2.7e-10 69.7 131 27.5
Os01g0172800 Oryza sativa ssp. japonica HOM05D001120 ORTHO05D002447 4.6e-10 68.9 133 30.1
GSVIVG01018478001 Vitis vinifera HOM05D001120 ORTHO05D002447 4.6e-10 68.9 143 26.6
CAN.G407.95 Capsicum annuum HOM05D001120 ORTHO05D002447 6.1e-10 68.6 134 29.1
Nitab4.5_0000024g0220 Nicotiana tabacum HOM05D001120 ORTHO05D002447 6.1e-10 68.6 133 28.6
Peaxi162Scf00148g00114 Petunia axillaris HOM05D001120 ORTHO05D002447 6.1e-10 68.6 133 29.3
Nitab4.5_0001250g0010 Nicotiana tabacum HOM05D001120 ORTHO05D002447 7.9e-10 68.2 133 27.8
Nitab4.5_0001764g0110 Nicotiana tabacum HOM05D004884 ORTHO05D005873 1.0e-09 67.8 134 29.1
TPR.G37175 Trifolium pratense HOM05D001120 ORTHO05D002447 1.0e-09 67.8 147 29.9
ClCG07G012680 Citrullus lanatus HOM05D001120 ORTHO05D002447 1.3e-09 67.4 133 26.3
ECA232G3997 Erigeron canadensis HOM05D001120 ORTHO05D002447 1.8e-09 67.0 131 26.7
Peaxi162Scf00332g00768 Petunia axillaris HOM05D001120 ORTHO05D002447 1.8e-09 67.0 134 29.1
BcaC06g32466 Brassica carinata HOM05D001120 ORTHO05D002447 2.3e-09 66.6 137 27.7
Nitab4.5_0013106g0010 Nicotiana tabacum HOM05D004884 ORTHO05D005873 2.3e-09 66.6 134 29.1
Sp6g35710 Schrenkiella parvula HOM05D001120 ORTHO05D002447 2.3e-09 66.6 165 26.1
arahy.Tifrunner.gnm1.ann1.1FS32P Arachis hypogaea HOM05D001120 ORTHO05D002447 3.9e-09 65.9 138 27.5
arahy.Tifrunner.gnm1.ann1.3J2MYH Arachis hypogaea HOM05D001120 ORTHO05D002447 3.9e-09 65.9 138 27.5
Migut.K00480 Erythranthe guttata HOM05D001120 ORTHO05D002447 8.7e-09 64.7 142 26.8
MBI14_g16338_MAGBIO Magnolia biondii HOM05D008034 ORTHO05D002447 8.7e-09 64.7 124 35.5
Solyc03g116590.3 Solanum lycopersicum HOM05D001120 ORTHO05D002447 8.7e-09 64.7 134 27.6
Sopen03g035500 Solanum pennellii HOM05D001120 ORTHO05D002447 8.7e-09 64.7 134 27.6
PGSC0003DMG400000634 Solanum tuberosum HOM05D001120 ORTHO05D002447 1.5e-08 63.9 134 26.9
CsaV3_3G016450 Cucumis sativus L. HOM05D001120 ORTHO05D002447 2.5e-08 63.2 173 24.3
SEGI_22870 Sequoiadendron giganteum HOM05D018424 ORTHO05D010051 3.3e-08 62.8 164 25.0
arahy.Tifrunner.gnm1.ann1.LIRE4J Arachis hypogaea HOM05D001120 ORTHO05D002447 4.3e-08 62.4 141 24.8
arahy.Tifrunner.gnm1.ann1.LMQR93 Arachis hypogaea HOM05D001120 ORTHO05D002447 4.3e-08 62.4 141 24.8
SEGI_12405 Sequoiadendron giganteum HOM05D018424 ORTHO05D010051 5.7e-08 62.0 138 24.6
CARHR205960 Cardamine hirsuta HOM05D001120 ORTHO05D002447 7.4e-08 61.6 140 27.9
Carub.0006s0612 Capsella rubella HOM05D001120 ORTHO05D002447 1.3e-07 60.8 137 27.0
Lj3g0018692 Lotus japonicus HOM05D001120 ORTHO05D002447 1.3e-07 60.8 107 31.8
AT5G07190 Arabidopsis thaliana HOM05D001120 ORTHO05D002447 3.7e-07 59.3 138 29.0
AL6G17410 Arabidopsis lyrata HOM05D001120 ORTHO05D002447 6.3e-07 58.5 138 28.3
Medtr2g103330 Medicago truncatula HOM05D001120 ORTHO05D002447 1.8e-06 57.0 100 34.0


User provided reference genes

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