Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G076400 Phaseolus vulgaris HOM05D005813 ORTHO05D007310 2.7e-239 831.6 437 100.0
VMungo1383G1345 Vigna mungo HOM05D005813 ORTHO05D007310 1.2e-226 789.6 437 93.6
Glyma.09G269300 Glycine max HOM05D005813 ORTHO05D007310 1.4e-219 766.1 437 86.5
Glyma.18G220700 Glycine max HOM05D005813 ORTHO05D007310 5.3e-219 764.2 437 86.7
Lalb_Chr03g0039571 Lupinus albus HOM05D005813 ORTHO05D007310 7.0e-211 737.3 437 83.1
Ca_11657_v3 Cicer arietinum L. HOM05D005813 ORTHO05D007310 6.1e-207 724.2 432 82.9
Lj1g0017617 Lotus japonicus HOM05D005813 ORTHO05D007310 1.5e-205 719.5 437 81.2
TPR.G29407 Trifolium pratense HOM05D005813 ORTHO05D007310 4.9e-204 714.5 432 81.5
arahy.Tifrunner.gnm1.ann1.4B5N4V Arachis hypogaea HOM05D005813 ORTHO05D007310 2.4e-203 712.2 435 79.8
Medtr7g074890 Medicago truncatula HOM05D005813 ORTHO05D007310 4.1e-203 711.4 432 82.6
arahy.Tifrunner.gnm1.ann1.DKE7V3 Arachis hypogaea HOM05D005813 ORTHO05D007310 1.6e-199 699.5 429 79.5
Duzib138G0196 Durio zibethinus HOM05D005813 ORTHO05D007310 5.4e-195 684.5 440 75.9
ClCG05G002290 Citrullus lanatus HOM05D005813 ORTHO05D007310 1.3e-193 679.9 434 77.4
MELO3C006191.2 Cucumis melo HOM05D005813 ORTHO05D007310 2.3e-193 679.1 434 77.4
CiPaw.02G167800 Carya illinoinensis HOM05D005813 ORTHO05D007310 3.9e-193 678.3 433 76.7
Duzib133G0639 Durio zibethinus HOM05D005813 ORTHO05D007310 3.3e-192 675.2 438 74.9
TWI59G1428 Tripterygium wilfordii HOM05D005813 ORTHO05D007310 5.6e-192 674.5 435 76.1
CiPaw.01G262200 Carya illinoinensis HOM05D005813 ORTHO05D007310 2.1e-191 672.5 432 75.7
CsaV3_3G009700 Cucumis sativus L. HOM05D005813 ORTHO05D007310 8.0e-191 670.6 434 76.7
PGR031G3848 Punica granatum HOM05D005813 ORTHO05D007310 1.4e-190 669.8 435 74.9
Prupe.2G145000 Prunus persica HOM05D005813 ORTHO05D007310 1.8e-190 669.5 436 76.1
Thecc.01G376600 Theobroma cacao HOM05D005813 ORTHO05D007310 2.3e-190 669.1 438 75.3
Manes.05G045300 Manihot esculenta HOM05D005813 ORTHO05D007310 6.8e-190 667.5 439 74.5
Eucgr.D02453 Eucalyptus grandis HOM05D005813 ORTHO05D007310 7.5e-189 664.1 438 74.2
Gohir.A08G031100 Gossypium hirsutum HOM05D005813 ORTHO05D007310 7.5e-189 664.1 437 72.5
Cfa001724 Carpinus fangiana HOM05D005813 ORTHO05D007310 4.9e-188 661.4 434 75.6
QL08p052527 Quercus lobata HOM05D005813 ORTHO05D007310 4.1e-187 658.3 431 74.7
Ciclev10020183m.g Citrus clementina HOM05D005813 ORTHO05D007310 7.0e-187 657.5 441 73.2
Potri.014G069400 Populus trichocarpa HOM05D005813 ORTHO05D007310 4.6e-186 654.8 438 72.8
Gohir.D08G042200 Gossypium hirsutum HOM05D005813 ORTHO05D007310 1.7e-185 652.9 437 71.4
MD02G1204700 Malus domestica HOM05D005813 ORTHO05D007310 2.3e-185 652.5 440 73.0
Nn4g26391 Nelumbo nucifera HOM05D005813 ORTHO05D007310 6.6e-185 651.0 434 73.0
Gohir.A08G134600 Gossypium hirsutum HOM05D005813 ORTHO05D007310 2.5e-184 649.0 439 76.3
Cpa.g.sc18.111 Carica papaya HOM05D005813 ORTHO05D007310 5.6e-184 647.9 438 73.7
Hund27345 Selenicereus undatus HOM05D005813 ORTHO05D007310 5.6e-184 647.9 439 71.3
THA.LOC104817009 Tarenaya hassleriana HOM05D005813 ORTHO05D007310 5.6e-184 647.9 435 73.3
Nn1g01240 Nelumbo nucifera HOM05D005813 ORTHO05D007310 9.5e-184 647.1 434 72.8
MBI04_g35272_MAGBIO Magnolia biondii HOM05D005813 ORTHO05D007310 1.6e-183 646.4 436 71.1
Sc02g0002610 Simmondsia chinensis HOM05D005813 ORTHO05D007310 2.8e-183 645.6 440 72.0
CANSAT56G4177 Cannabis sativa HOM05D005813 ORTHO05D007310 4.7e-183 644.8 438 73.5
Migut.B01633 Erythranthe guttata HOM05D005813 ORTHO05D007310 4.7e-183 644.8 431 71.7
Gohir.D08G155500 Gossypium hirsutum HOM05D005813 ORTHO05D007310 8.1e-183 644.0 439 76.1
Gorai.004G161700 Gossypium raimondii HOM05D005813 ORTHO05D007310 8.1e-183 644.0 439 76.1
Sp6g00150 Schrenkiella parvula HOM05D005813 ORTHO05D007310 1.8e-182 642.9 435 71.5
Thhalv10028676m.g Eutrema salsugineum HOM05D005813 ORTHO05D007310 4.0e-182 641.7 435 73.6
Lj7A528T62 Lonicera japonica HOM05D005813 ORTHO05D007310 5.2e-182 641.3 455 70.1
AL6G53420 Arabidopsis lyrata HOM05D005813 ORTHO05D007310 1.5e-181 639.8 435 71.5
FAN01G0479 Fragaria x ananassa HOM05D005813 ORTHO05D007310 1.5e-181 639.8 439 74.0
Sabra02G0117100 Salix brachista HOM05D005813 ORTHO05D007310 2.0e-181 639.4 453 70.2
AT4G00090 Arabidopsis thaliana HOM05D005813 ORTHO05D007310 3.4e-181 638.6 435 71.7
MSTRG.17192 Avicennia marina HOM05D005813 ORTHO05D007310 4.4e-181 638.3 440 71.4
FvH4_7g11840 Fragaria vesca HOM05D005813 ORTHO05D007310 5.8e-181 637.9 439 73.6
FAN06G0614 Fragaria x ananassa HOM05D005813 ORTHO05D007310 5.8e-181 637.9 439 73.6
FAN10G1195 Fragaria x ananassa HOM05D005813 ORTHO05D007310 5.8e-181 637.9 439 72.2
Sed0028100 Sechium edule HOM05D005813 ORTHO05D007310 5.8e-181 637.9 433 73.4
TAR374G0529 Trochodendron aralioides HOM05D005813 ORTHO05D007310 7.5e-181 637.5 438 71.9
CSS0030666 Camellia sinensis var. sinensis HOM05D005813 ORTHO05D007310 9.9e-181 637.1 433 72.3
CSS0042195 Camellia sinensis var. sinensis HOM05D005813 ORTHO05D007310 9.9e-181 637.1 433 72.3
Sabra02G0115400 Salix brachista HOM05D005813 ORTHO05D007310 9.9e-181 637.1 459 69.3
FAN10G2798 Fragaria x ananassa HOM05D005813 ORTHO05D007310 2.2e-180 636.0 439 73.6
CARHR248130 Cardamine hirsuta HOM05D005813 ORTHO05D007310 3.7e-180 635.2 431 70.5
Carub.0006s3714 Capsella rubella HOM05D005813 ORTHO05D007310 1.4e-179 633.3 431 71.0
Gorai.004G040800 Gossypium raimondii HOM05D005813 ORTHO05D007310 2.4e-179 632.5 483 64.4
Potri.002G148100 Populus trichocarpa HOM05D005813 ORTHO05D007310 2.4e-179 632.5 436 71.8
BcaB01g02210 Brassica carinata HOM05D005813 ORTHO05D007310 3.2e-179 632.1 436 70.2
Cc02_g23900 Coffea canephora HOM05D005813 ORTHO05D007310 3.2e-179 632.1 443 70.0
C09p00110 Brassica napus HOM05D005813 ORTHO05D007310 5.4e-179 631.3 435 70.1
BraA09t35685Z Brassica rapa HOM05D005813 ORTHO05D007310 5.4e-179 631.3 435 70.1
Psat3g115920 Pisum sativum HOM05D005813 ORTHO05D007310 2.7e-178 629.0 432 75.0
BcaC04g24202 Brassica carinata HOM05D005813 ORTHO05D007310 4.6e-178 628.2 435 69.7
BolC9t52946H Brassica oleracea HOM05D005813 ORTHO05D007310 4.6e-178 628.2 435 69.7
Nitab4.5_0004917g0040 Nicotiana tabacum HOM05D005813 ORTHO05D007310 4.6e-178 628.2 439 70.6
GSVIVG01027606001 Vitis vinifera HOM05D005813 ORTHO05D007310 4.6e-178 628.2 411 74.5
FAN06G1564 Fragaria x ananassa HOM05D005813 ORTHO05D007310 1.0e-177 627.1 451 71.4
PSO478G4467 Papaver somniferum HOM05D005813 ORTHO05D007310 1.0e-177 627.1 431 70.5
Solyc01g091310.3 Solanum lycopersicum HOM05D005813 ORTHO05D007310 1.0e-177 627.1 442 68.6
RcHm_v2.0_Chr1g0350521 Rosa chinensis HOM05D005813 ORTHO05D007310 5.1e-177 624.8 439 73.1
Sopen01g037050 Solanum pennellii HOM05D005813 ORTHO05D007310 6.6e-177 624.4 442 70.4
PSO782G1692 Papaver somniferum HOM05D005813 ORTHO05D007310 8.6e-177 624.0 431 69.8
SGA_v2.0_scaffold153G37009 Striga asiatica HOM05D005813 ORTHO05D007310 1.5e-176 623.2 442 69.5
Sed0000354 Sechium edule HOM05D005813 ORTHO05D007310 3.3e-176 622.1 416 74.3
Lsat_1_v5_gn_7_7160 Lactuca sativa HOM05D005813 ORTHO05D007310 7.3e-176 620.9 434 71.0
unitig_749.g14372 Utricularia gibba HOM05D005813 ORTHO05D007310 1.6e-175 619.8 441 68.9
SalBow5G4545 Salvia bowleyana HOM05D005813 ORTHO05D007310 2.1e-175 619.4 440 74.5
Oeu055488.1 Olea europaea HOM05D005813 ORTHO05D007310 2.4e-174 615.9 468 70.5
MD07G1121300 Malus domestica HOM05D005813 ORTHO05D007310 8.9e-174 614.0 452 69.0
AUR62004213 Chenopodium quinoa HOM05D005813 ORTHO05D007310 1.2e-173 613.6 439 67.7
HanXRQChr04g0122421 Helianthus annuus HOM05D005813 ORTHO05D007310 1.2e-173 613.6 434 69.6
Aa31LG5G9310 Aethionema arabicum HOM05D005813 ORTHO05D007310 2.6e-173 612.5 465 65.4
EL10Ac1g00888 Beta vulgaris HOM05D005813 ORTHO05D007310 2.2e-172 609.4 440 66.1
Ah.05g174210 Amaranthus hybridus HOM05D005813 ORTHO05D007310 8.4e-172 607.4 438 67.4
Atru.chr5.306 Acer truncatum HOM05D005813 ORTHO05D007310 4.2e-171 605.1 437 69.6
Aqoxy7G00631 Aquilegia oxysepala HOM05D005813 ORTHO05D007310 6.6e-169 597.8 433 68.1
Haze_16813 Corylus avellana HOM05D005813 ORTHO05D007310 6.6e-169 597.8 458 69.9
Rhsim01G0147300 Rhododendron simsii HOM05D005813 ORTHO05D007310 8.7e-169 597.4 465 68.0
Dinv43710 Davidia involucrata HOM05D005813 ORTHO05D007310 4.7e-167 591.7 395 74.2
ATR0810G089 Amborella trichopoda HOM05D005813 ORTHO05D007310 6.9e-166 587.8 431 65.4
FAN03G1318 Fragaria x ananassa HOM05D005813 ORTHO05D007310 1.2e-162 577.0 395 74.7
CDE09G1050 Ceratophyllum demersum HOM05D005813 ORTHO05D007310 1.6e-162 576.6 435 65.1
CDE11G1084 Ceratophyllum demersum HOM05D005813 ORTHO05D007310 7.8e-162 574.3 435 65.1
unitig_76.g29089 Utricularia gibba HOM05D005813 ORTHO05D007310 1.1e-160 570.5 397 70.0
Nitab4.5_0000457g0240 Nicotiana tabacum HOM05D005813 ORTHO05D007310 1.9e-160 569.7 383 73.4
vmacro21010 Vaccinium macrocarpon HOM05D005813 ORTHO05D007310 2.9e-156 555.8 452 64.6
SEGI_07293 Sequoiadendron giganteum HOM05D005813 ORTHO05D007310 8.4e-156 554.3 425 64.0
Actinidia12685 Actinidia chinensis HOM05D005813 ORTHO05D007310 1.6e-154 550.1 437 65.2
Peaxi162Scf00013g03441 Petunia axillaris HOM05D005813 ORTHO05D007310 1.0e-153 547.4 398 67.6
AUR62013635 Chenopodium quinoa HOM05D005813 ORTHO05D007310 4.3e-152 542.0 452 61.7
HPP92_003519 Vanilla planifolia HOM05D005813 ORTHO05D007310 8.1e-151 537.7 431 62.2
Zm00001eb065090 Zea mays HOM05D005813 ORTHO05D007310 2.6e-149 532.7 436 61.5
COL.COLO4_12543 Corchorus olitorius HOM05D005813 ORTHO05D007310 3.8e-148 528.9 438 62.3
Mapoly0037s0016 Marchantia polymorpha HOM05D005813 ORTHO05D007310 1.9e-131 473.4 429 56.4
AagrBONN_evm.TU.Sc2ySwM_117.33 Anthoceros agrestis HOM05D005813 ORTHO05D007310 1.8e-126 456.8 393 58.0
Psat3g202640 Pisum sativum HOM05D005813 ORTHO05D007310 4.1e-126 455.7 295 76.6
SHI01708 Sapria himalayana HOM05D005813 ORTHO05D007310 6.9e-126 454.9 437 54.2
Pp3c19_7620 Physcomitrium patens HOM05D005813 ORTHO05D007310 1.5e-125 453.8 434 53.7
A09p00750 Brassica napus HOM05D005813 ORTHO05D007310 6.5e-124 448.4 279 74.9
PGSC0003DMG400012776 Solanum tuberosum HOM05D005813 ORTHO05D007310 1.4e-123 447.2 274 75.9
DCAR_015903 Daucus carota HOM05D005813 ORTHO05D007310 5.9e-117 425.2 330 65.5
SMO367G0685 Selaginella moellendorffii HOM05D005813 ORTHO05D007310 6.5e-116 421.8 360 58.1
CBR_g23070 Chara braunii HOM05D005813 ORTHO05D007310 9.1e-110 401.4 364 54.4
PSO170G3521 Papaver somniferum HOM05D005813 ORTHO05D007310 2.6e-109 399.8 313 61.7
PSO782G5041 Papaver somniferum HOM05D005813 ORTHO05D007310 3.5e-109 399.4 330 60.0
CBR_g21297 Chara braunii HOM05D005813 ORTHO05D007310 1.5e-107 394.0 371 53.6
PSO675G1684 Papaver somniferum HOM05D005813 ORTHO05D007310 3.3e-83 313.2 244 60.2
Actinidia33466 Actinidia chinensis HOM05D005813 ORTHO05D007310 1.3e-76 291.2 181 76.2
PSO478G0826 Papaver somniferum HOM05D005813 ORTHO05D007310 4.7e-58 229.6 156 71.2
Cre02.g102450 Chlamydomonas reinhardtii HOM05D005813 ORTHO05D007310 5.4e-54 216.1 362 35.6
MCO05G082 Micromonas commoda HOM05D005813 ORTHO05D007310 3.2e-46 190.3 394 32.7
PSO478G4170 Papaver somniferum HOM05D005813 ORTHO05D007310 3.5e-21 107.1 116 48.3
MELO3C031411.2 Cucumis melo HOM05D000544 ORTHO05D169468 3.7e-10 70.5 38 78.9
ATR0705G066 Amborella trichopoda HOM05D004669 ORTHO05D005767 8.2e-10 69.3 223 25.6
Hund06583 Selenicereus undatus HOM05D004669 ORTHO05D005767 1.4e-09 68.6 218 24.3
MCO13G313 Micromonas commoda HOM05D004669 ORTHO05D005767 6.9e-09 66.2 224 25.4
MELO3C029166.2 Cucumis melo HOM05D005813 ORTHO05D009576 1.2e-08 65.5 37 73.0
Lalb_Chr11g0073441 Lupinus albus HOM05D004669 ORTHO05D005767 5.9e-08 63.2 218 22.5
SEGI_00336 Sequoiadendron giganteum HOM05D004669 ORTHO05D005767 7.7e-08 62.8 218 22.5
EL10Ac4g08444 Beta vulgaris HOM05D004768 ORTHO05D005812 1.0e-07 62.4 207 25.6
CANSAT56G1977 Cannabis sativa HOM05D004669 ORTHO05D005767 1.3e-07 62.0 218 23.9
Cpa.g.sc3.215 Carica papaya HOM05D005717 ORTHO05D007221 2.2e-07 61.2 216 28.7
MELO3C030776.2 Cucumis melo HOM05D005813 ORTHO05D007310 2.9e-07 60.8 39 64.1
SGA_v2.0_scaffold5G02661 Striga asiatica HOM05D004669 ORTHO05D005767 2.9e-07 60.8 218 22.9
Cre06.g254150 Chlamydomonas reinhardtii HOM05D004669 ORTHO05D005767 3.8e-07 60.5 218 22.5
PSO541G6522 Papaver somniferum HOM05D004669 ORTHO05D005767 3.8e-07 60.5 218 22.5
Sed0011544 Sechium edule HOM05D005717 ORTHO05D007221 3.8e-07 60.5 225 25.8
TWI12G0769 Tripterygium wilfordii HOM05D004669 ORTHO05D005767 3.8e-07 60.5 218 22.5
AUR62011570 Chenopodium quinoa HOM05D004669 ORTHO05D005767 5.0e-07 60.1 218 22.0
AUR62016387 Chenopodium quinoa HOM05D004669 ORTHO05D005767 5.0e-07 60.1 218 22.0
Lj1g0022487 Lotus japonicus HOM05D000836 ORTHO05D000709 5.0e-07 60.1 217 23.5
Thecc.06G074100 Theobroma cacao HOM05D004669 ORTHO05D005767 5.0e-07 60.1 218 22.5
Zm00001eb293800 Zea mays HOM05D004669 ORTHO05D005767 5.0e-07 60.1 221 21.7
ClCG04G009490 Citrullus lanatus HOM05D005316 ORTHO05D006495 6.5e-07 59.7 178 25.8
MELO3C024484.2 Cucumis melo HOM05D005316 ORTHO05D006495 8.5e-07 59.3 178 26.4
Solyc03g120080.4 Solanum lycopersicum HOM05D004669 ORTHO05D005767 8.5e-07 59.3 218 22.5
Sopen03g038950 Solanum pennellii HOM05D004669 ORTHO05D005767 8.5e-07 59.3 218 22.5
VMungo0720G2087 Vigna mungo HOM05D000836 ORTHO05D000709 8.5e-07 59.3 192 24.0
PSO675G6139 Papaver somniferum HOM05D004669 ORTHO05D005767 1.1e-06 58.9 218 22.0
PGR031G2027 Punica granatum HOM05D004669 ORTHO05D005767 1.1e-06 58.9 218 22.9
Sabra15G0019200 Salix brachista HOM05D005766 ORTHO05D007002 1.1e-06 58.9 355 20.6
ClCG06G013830 Citrullus lanatus HOM05D004669 ORTHO05D005767 1.4e-06 58.5 218 22.5
ClCG07G012820 Citrullus lanatus HOM05D004669 ORTHO05D005767 1.4e-06 58.5 218 22.5
MELO3C017903.2 Cucumis melo HOM05D004669 ORTHO05D005767 1.4e-06 58.5 218 22.5
CsaV3_4G001370 Cucumis sativus L. HOM05D004669 ORTHO05D005767 1.4e-06 58.5 218 22.5
MD17G1203900 Malus domestica HOM05D004669 ORTHO05D005767 1.4e-06 58.5 218 22.0
SMO356G0696 Selaginella moellendorffii HOM05D004669 ORTHO05D005767 1.4e-06 58.5 218 23.4
CAN.G464.7 Capsicum annuum HOM05D001455 ORTHO05D001587 1.9e-06 58.2 69 42.0
FAN09G4623 Fragaria x ananassa HOM05D004669 ORTHO05D005767 1.9e-06 58.2 217 22.1
Lj1g0012756 Lotus japonicus HOM05D003006 ORTHO05D003438 1.9e-06 58.2 299 23.7
Potri.015G026100 Populus trichocarpa HOM05D005766 ORTHO05D007002 1.9e-06 58.2 348 19.5
FvH4_6g30400 Fragaria vesca HOM05D004669 ORTHO05D005767 2.5e-06 57.8 217 21.7
FAN02G3057 Fragaria x ananassa HOM05D004669 ORTHO05D005767 2.5e-06 57.8 217 21.7
FAN05G0230 Fragaria x ananassa HOM05D004669 ORTHO05D005767 2.5e-06 57.8 217 21.7
FAN14G3011 Fragaria x ananassa HOM05D004669 ORTHO05D005767 2.5e-06 57.8 217 21.7
Zm00001eb386980 Zea mays HOM05D000002 ORTHO05D006339 2.5e-06 57.8 157 26.8
RcHm_v2.0_Chr2g0136751 Rosa chinensis HOM05D004669 ORTHO05D005767 3.2e-06 57.4 217 21.7
GSVIVG01008170001 Vitis vinifera HOM05D005717 ORTHO05D007221 4.2e-06 57.0 230 27.8
Ciclev10018495m.g Citrus clementina HOM05D005717 ORTHO05D007221 5.5e-06 56.6 264 25.8
Os05g0519500 Oryza sativa ssp. japonica HOM05D004669 ORTHO05D005767 5.5e-06 56.6 218 21.6
arahy.Tifrunner.gnm1.ann1.DS860L Arachis hypogaea HOM05D004669 ORTHO05D005767 7.2e-06 56.2 218 21.6
arahy.Tifrunner.gnm1.ann1.L4R828 Arachis hypogaea HOM05D004669 ORTHO05D005767 7.2e-06 56.2 218 21.6


User provided reference genes

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