Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G054400 Phaseolus vulgaris HOM05D005229 ORTHO05D006378 2.1e-138 495.7 257 100.0
VMungo1383G0609 Vigna mungo HOM05D005229 ORTHO05D006378 6.8e-113 411.0 214 97.2
Glyma.09G250800 Glycine max HOM05D005229 ORTHO05D006378 9.5e-107 390.6 215 92.6
Glyma.18G241700 Glycine max HOM05D005229 ORTHO05D006378 9.5e-107 390.6 215 91.6
Lj1g0022024 Lotus japonicus HOM05D005229 ORTHO05D006378 2.8e-103 379.0 216 88.9
Ca_07979_v3 Cicer arietinum L. HOM05D005229 ORTHO05D006378 5.4e-102 374.8 215 87.0
arahy.Tifrunner.gnm1.ann1.MF538D Arachis hypogaea HOM05D005229 ORTHO05D006378 1.2e-101 373.6 215 86.0
Psat3g138440 Pisum sativum HOM05D005229 ORTHO05D006378 2.0e-101 372.9 215 86.5
arahy.Tifrunner.gnm1.ann1.18YQBF Arachis hypogaea HOM05D005229 ORTHO05D006378 4.5e-101 371.7 215 85.6
Lalb_Chr19g0127611 Lupinus albus HOM05D005229 ORTHO05D006378 4.5e-101 371.7 215 86.5
Medtr7g079900 Medicago truncatula HOM05D005229 ORTHO05D006378 2.5e-99 365.9 215 84.2
Lalb_Chr01g0020361 Lupinus albus HOM05D005229 ORTHO05D006378 1.6e-98 363.2 215 86.0
TPR.G30351 Trifolium pratense HOM05D005229 ORTHO05D006378 4.7e-98 361.7 217 86.2
Nn1g09761 Nelumbo nucifera HOM05D005229 ORTHO05D006378 6.1e-98 361.3 219 84.0
TWI36G1337 Tripterygium wilfordii HOM05D005229 ORTHO05D006378 6.1e-98 361.3 222 84.2
Prupe.6G361000 Prunus persica HOM05D005229 ORTHO05D006378 1.4e-97 360.1 220 83.6
FAN02G4095 Fragaria x ananassa HOM05D005229 ORTHO05D006378 1.8e-97 359.8 219 84.5
TWI18G1321 Tripterygium wilfordii HOM05D005229 ORTHO05D006378 5.2e-97 358.2 219 83.6
DCAR_018610 Daucus carota HOM05D005229 ORTHO05D006378 8.9e-97 357.5 218 83.5
FvH4_6g00530 Fragaria vesca HOM05D005229 ORTHO05D006378 8.9e-97 357.5 219 83.6
FAN09G4314 Fragaria x ananassa HOM05D005229 ORTHO05D006378 8.9e-97 357.5 219 83.6
TAR365G0963 Trochodendron aralioides HOM05D005229 ORTHO05D006378 8.9e-97 357.5 219 83.1
FAN05G0704 Fragaria x ananassa HOM05D005229 ORTHO05D006378 1.5e-96 356.7 219 83.6
FAN14G1738 Fragaria x ananassa HOM05D005229 ORTHO05D006378 3.4e-96 355.5 219 83.1
Cfa006268 Carpinus fangiana HOM05D005229 ORTHO05D006378 5.7e-96 354.8 219 81.7
CiPaw.07G079800 Carya illinoinensis HOM05D005229 ORTHO05D006378 5.7e-96 354.8 220 83.6
QL01p048658 Quercus lobata HOM05D005229 ORTHO05D006378 5.7e-96 354.8 218 82.6
Ciclev10016637m.g Citrus clementina HOM05D005229 ORTHO05D006378 9.8e-96 354.0 218 82.1
PGR083G1330 Punica granatum HOM05D005229 ORTHO05D006378 1.3e-95 353.6 220 80.0
ClCG11G010740 Citrullus lanatus HOM05D005229 ORTHO05D006378 1.7e-95 353.2 217 82.9
MELO3C008731.2 Cucumis melo HOM05D005229 ORTHO05D006378 1.7e-95 353.2 217 82.9
Atru.chr6.3527 Acer truncatum HOM05D005229 ORTHO05D006378 2.9e-95 352.4 219 81.7
Peaxi162Scf00841g00210 Petunia axillaris HOM05D005229 ORTHO05D006378 2.9e-95 352.4 219 81.3
DCAR_012704 Daucus carota HOM05D005229 ORTHO05D006378 3.7e-95 352.1 218 82.1
ECA236G3288 Erigeron canadensis HOM05D005229 ORTHO05D006378 3.7e-95 352.1 217 82.5
HanXRQChr12g0363961 Helianthus annuus HOM05D005229 ORTHO05D006378 4.9e-95 351.7 217 82.0
unitig_60.g25573 Utricularia gibba HOM05D005229 ORTHO05D006378 4.9e-95 351.7 217 82.5
Haze_04550 Corylus avellana HOM05D005229 ORTHO05D006378 6.4e-95 351.3 219 81.7
CsaV3_2G009680 Cucumis sativus L. HOM05D005229 ORTHO05D006378 6.4e-95 351.3 217 82.0
Oeu013526.1 Olea europaea HOM05D005229 ORTHO05D006378 8.3e-95 350.9 217 82.5
Cpa.g.sc8.42 Carica papaya HOM05D005229 ORTHO05D006378 1.1e-94 350.5 218 81.7
Oeu025298.1 Olea europaea HOM05D005229 ORTHO05D006378 1.1e-94 350.5 217 82.0
Solyc06g082940.3 Solanum lycopersicum HOM05D005229 ORTHO05D006378 1.1e-94 350.5 219 80.4
Sabra14G0134400 Salix brachista HOM05D005229 ORTHO05D006378 1.4e-94 350.1 216 83.8
RcHm_v2.0_Chr3g0447921 Rosa chinensis HOM05D005229 ORTHO05D006378 1.8e-94 349.7 219 82.2
unitig_0.g420 Utricularia gibba HOM05D005229 ORTHO05D006378 3.2e-94 349.0 218 82.1
SGA_v2.0_scaffold29G12061 Striga asiatica HOM05D005229 ORTHO05D006378 4.1e-94 348.6 218 80.3
AUR62000314 Chenopodium quinoa HOM05D005229 ORTHO05D006378 9.2e-94 347.4 216 81.9
CAN.G874.38 Capsicum annuum HOM05D005229 ORTHO05D006378 1.2e-93 347.1 219 80.8
PSO017G0175 Papaver somniferum HOM05D005229 ORTHO05D006378 1.2e-93 347.1 220 81.8
PSO675G2116 Papaver somniferum HOM05D005229 ORTHO05D006378 1.2e-93 347.1 220 81.8
THA.LOC104808816 Tarenaya hassleriana HOM05D005229 ORTHO05D006378 1.6e-93 346.7 219 80.4
AUR62006659 Chenopodium quinoa HOM05D005229 ORTHO05D006378 2.0e-93 346.3 216 81.5
Potri.002G239700 Populus trichocarpa HOM05D005229 ORTHO05D006378 2.0e-93 346.3 217 81.6
Sopen06g034340 Solanum pennellii HOM05D005229 ORTHO05D006378 2.0e-93 346.3 219 79.9
CAN.G874.39 Capsicum annuum HOM05D005229 ORTHO05D006378 2.7e-93 345.9 219 80.4
Solyc06g082950.4 Solanum lycopersicum HOM05D005229 ORTHO05D006378 2.7e-93 345.9 219 79.5
PGSC0003DMG400027672 Solanum tuberosum HOM05D005229 ORTHO05D006378 2.7e-93 345.9 219 79.9
Lsat_1_v5_gn_8_98481 Lactuca sativa HOM05D005229 ORTHO05D006378 3.5e-93 345.5 217 79.7
MBI07_g06134_MAGBIO Magnolia biondii HOM05D005229 ORTHO05D006378 5.9e-93 344.7 218 80.3
MD12G1260300 Malus domestica HOM05D005229 ORTHO05D006378 5.9e-93 344.7 221 79.2
BcaC02g09463 Brassica carinata HOM05D005229 ORTHO05D006378 7.8e-93 344.4 219 79.0
C04p43050 Brassica napus HOM05D005229 ORTHO05D006378 7.8e-93 344.4 219 79.0
BolC4t25883H Brassica oleracea HOM05D005229 ORTHO05D006378 7.8e-93 344.4 219 79.0
Manes.12G055600 Manihot esculenta HOM05D005229 ORTHO05D006378 7.8e-93 344.4 217 80.6
Actinidia34531 Actinidia chinensis HOM05D005229 ORTHO05D006378 1.0e-92 344.0 219 81.7
BcaB03g16154 Brassica carinata HOM05D005229 ORTHO05D006378 1.0e-92 344.0 219 79.5
PGSC0003DMG400027671 Solanum tuberosum HOM05D005229 ORTHO05D006378 1.0e-92 344.0 219 79.5
MD04G1244400 Malus domestica HOM05D005229 ORTHO05D006378 1.3e-92 343.6 221 79.2
Aqoxy2G04070 Aquilegia oxysepala HOM05D005229 ORTHO05D006378 1.7e-92 343.2 217 81.6
COL.COLO4_07353 Corchorus olitorius HOM05D005229 ORTHO05D006378 1.7e-92 343.2 219 79.9
Migut.D00776 Erythranthe guttata HOM05D005229 ORTHO05D006378 1.7e-92 343.2 216 80.1
Thecc.05G199500 Theobroma cacao HOM05D005229 ORTHO05D006378 1.7e-92 343.2 219 79.5
Sed0023204 Sechium edule HOM05D005229 ORTHO05D006378 2.3e-92 342.8 217 80.6
Sopen06g034330 Solanum pennellii HOM05D005229 ORTHO05D006378 2.3e-92 342.8 219 78.5
Sp7g09420 Schrenkiella parvula HOM05D005229 ORTHO05D006378 3.0e-92 342.4 219 78.5
A04p09140 Brassica napus HOM05D005229 ORTHO05D006378 3.9e-92 342.0 219 78.5
Eucgr.K02362 Eucalyptus grandis HOM05D005229 ORTHO05D006378 3.9e-92 342.0 230 76.5
Aa31LG9G5690 Aethionema arabicum HOM05D005229 ORTHO05D006378 5.0e-92 341.7 219 78.1
EL10Ac4g09972 Beta vulgaris HOM05D005229 ORTHO05D006378 6.6e-92 341.3 215 80.0
HanXRQChr08g0231801 Helianthus annuus HOM05D005229 ORTHO05D006378 8.6e-92 340.9 214 80.8
vmacro14690 Vaccinium macrocarpon HOM05D005229 ORTHO05D006378 8.6e-92 340.9 221 77.4
Thhalv10026195m.g Eutrema salsugineum HOM05D005229 ORTHO05D006378 1.1e-91 340.5 219 78.5
Sed0003052 Sechium edule HOM05D005229 ORTHO05D006378 1.1e-91 340.5 217 80.2
MSTRG.12743 Avicennia marina HOM05D005229 ORTHO05D006378 1.5e-91 340.1 217 79.7
MSTRG.17960 Avicennia marina HOM05D005229 ORTHO05D006378 1.5e-91 340.1 218 78.9
Gohir.A07G089500 Gossypium hirsutum HOM05D005229 ORTHO05D006378 1.9e-91 339.7 220 79.5
Sabra02G0182500 Salix brachista HOM05D005229 ORTHO05D006378 1.9e-91 339.7 214 80.4
Rhsim01G0247800 Rhododendron simsii HOM05D005229 ORTHO05D006378 2.5e-91 339.3 215 78.1
SalBow3G3798 Salvia bowleyana HOM05D005229 ORTHO05D006378 2.5e-91 339.3 219 79.5
CSS0044510 Camellia sinensis var. sinensis HOM05D005229 ORTHO05D006378 3.3e-91 339.0 220 79.5
Cc01_g15890 Coffea canephora HOM05D005229 ORTHO05D006378 4.3e-91 338.6 218 78.9
BcaB04g17739 Brassica carinata HOM05D005229 ORTHO05D006378 5.6e-91 338.2 218 78.0
CARHR218150 Cardamine hirsuta HOM05D005229 ORTHO05D006378 5.6e-91 338.2 218 78.0
CDE06G2797 Ceratophyllum demersum HOM05D005229 ORTHO05D006378 5.6e-91 338.2 217 78.3
BraA08t32752Z Brassica rapa HOM05D005229 ORTHO05D006378 7.3e-91 337.8 255 70.6
Lsat_1_v5_gn_9_16861 Lactuca sativa HOM05D005229 ORTHO05D006378 9.5e-91 337.4 214 79.9
A08p07360 Brassica napus HOM05D005229 ORTHO05D006378 1.2e-90 337.0 217 77.9
Thecc.01G207800 Theobroma cacao HOM05D005229 ORTHO05D006378 1.2e-90 337.0 218 78.9
GSVIVG01019114001 Vitis vinifera HOM05D005229 ORTHO05D006378 1.2e-90 337.0 222 77.5
Potri.014G175600 Populus trichocarpa HOM05D005229 ORTHO05D006378 1.6e-90 336.7 216 79.2
Hund07343 Selenicereus undatus HOM05D005229 ORTHO05D006378 2.1e-90 336.3 220 78.2
AL9U11740 Arabidopsis lyrata HOM05D005229 ORTHO05D006378 2.8e-90 335.9 218 77.5
BolC8t47751H Brassica oleracea HOM05D005229 ORTHO05D006378 2.8e-90 335.9 217 77.9
C08p09050 Brassica napus HOM05D005229 ORTHO05D006378 3.6e-90 335.5 217 77.4
AT4G12800 Arabidopsis thaliana HOM05D005229 ORTHO05D006378 4.7e-90 335.1 219 76.7
BcaC07g37428 Brassica carinata HOM05D005229 ORTHO05D006378 4.7e-90 335.1 217 77.0
Carub.0007s3001 Capsella rubella HOM05D005229 ORTHO05D006378 4.7e-90 335.1 219 77.2
PGR044G1943 Punica granatum HOM05D005229 ORTHO05D006378 6.2e-90 334.7 222 78.4
ECA247G0242 Erigeron canadensis HOM05D005229 ORTHO05D006378 1.4e-89 333.6 214 78.5
Gorai.001G101200 Gossypium raimondii HOM05D005229 ORTHO05D006378 1.4e-89 333.6 217 78.8
Lj2P1112T20 Lonicera japonica HOM05D005229 ORTHO05D006378 1.8e-89 333.2 215 80.0
CANSAT54G2118 Cannabis sativa HOM05D005229 ORTHO05D006378 5.2e-89 331.6 219 79.0
Gohir.D07G094300 Gossypium hirsutum HOM05D005229 ORTHO05D006378 6.8e-89 331.3 217 79.3
Gohir.A07G160500 Gossypium hirsutum HOM05D005229 ORTHO05D006378 1.2e-88 330.5 216 78.7
Gohir.D07G168100 Gossypium hirsutum HOM05D005229 ORTHO05D006378 1.2e-88 330.5 216 78.7
Duzib138G0242 Durio zibethinus HOM05D005229 ORTHO05D006378 4.4e-88 328.6 219 77.6
Ah.04g158950 Amaranthus hybridus HOM05D005229 ORTHO05D006378 2.2e-87 326.2 215 76.7
Gorai.N002100 Gossypium raimondii HOM05D005229 ORTHO05D006378 2.9e-87 325.9 216 79.2
Os12g0420400 Oryza sativa ssp. japonica HOM05D005229 ORTHO05D006378 5.6e-83 311.6 213 74.6
Lj1P104T52 Lonicera japonica HOM05D005229 ORTHO05D006378 6.8e-81 304.7 165 89.7
ATR1147G045 Amborella trichopoda HOM05D005229 ORTHO05D006378 1.2e-80 303.9 219 72.1
Zm00001eb123000 Zea mays HOM05D005229 ORTHO05D006378 7.5e-80 301.2 214 73.4
SEGI_02964 Sequoiadendron giganteum HOM05D005229 ORTHO05D006378 3.7e-79 298.9 193 75.6
Zm00001eb336580 Zea mays HOM05D005229 ORTHO05D006378 3.3e-75 285.8 163 83.4
CDE06G0966 Ceratophyllum demersum HOM05D005229 ORTHO05D006378 1.2e-74 283.9 190 75.3
Nitab4.5_0001348g0130 Nicotiana tabacum HOM05D005229 ORTHO05D006378 2.0e-72 276.6 165 81.8
Mapoly0102s0025 Marchantia polymorpha HOM05D005229 ORTHO05D006378 1.7e-71 273.5 209 65.1
Pp3c5_4200 Physcomitrium patens HOM05D005229 ORTHO05D006378 6.4e-71 271.6 176 76.1
Pp3c16_5670 Physcomitrium patens HOM05D005229 ORTHO05D006378 4.1e-70 268.9 172 74.4
AagrBONN_evm.TU.Sc2ySwM_362.2854 Anthoceros agrestis HOM05D005229 ORTHO05D006378 3.9e-68 262.3 169 74.6
Pp3c27_2310 Physcomitrium patens HOM05D005229 ORTHO05D006378 6.6e-68 261.5 169 74.0
Dinv28794 Davidia involucrata HOM05D005229 ORTHO05D006378 8.7e-60 234.6 218 61.9
CBR_g27900 Chara braunii HOM05D005229 ORTHO05D006378 5.3e-57 225.3 229 53.3
Nitab4.5_0001348g0080 Nicotiana tabacum HOM05D005229 ORTHO05D006378 5.3e-57 225.3 220 57.7
Peaxi162Scf01242g00025 Petunia axillaris HOM05D005229 ORTHO05D006378 2.1e-50 203.4 218 55.0
MCO13G042 Micromonas commoda HOM05D005229 ORTHO05D006378 2.4e-46 189.9 158 60.8
Cre12.g486300 Chlamydomonas reinhardtii HOM05D005229 ORTHO05D006378 9.3e-46 188.0 193 52.3
Hma1.2p1_0171F.1_g075540 Hydrangea macrophylla HOM05D005229 ORTHO05D006378 1.3e-44 184.1 127 71.7
Actinidia23801 Actinidia chinensis HOM05D005229 ORTHO05D006378 1.1e-43 181.0 134 73.9
PRCOL_00002830 Prasinoderma coloniale HOM05D005229 ORTHO05D006378 1.8e-41 173.7 150 55.3
MD04G1204600 Malus domestica HOM05D000208 ORTHO05D000130 4.2e-30 136.0 107 72.0
Actinidia04690 Actinidia chinensis HOM05D004953 ORTHO05D006193 2.9e-15 86.7 59 72.9
Actinidia12853 Actinidia chinensis HOM05D001772 ORTHO05D000476 2.9e-15 86.7 59 72.9
Actinidia23346 Actinidia chinensis HOM05D005229 ORTHO05D057974 3.8e-07 59.7 54 55.6


User provided reference genes

Program Settings