Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G050500 Phaseolus vulgaris HOM05D004953 ORTHO05D006193 0.0e+00 1570.4 801 100.0
VMungo1383G3652 Vigna mungo HOM05D004953 ORTHO05D006193 0.0e+00 1474.1 800 94.0
Glyma.18G246600 Glycine max HOM05D004953 ORTHO05D006193 0.0e+00 1342.8 801 85.8
Ca_08034_v3 Cicer arietinum L. HOM05D004953 ORTHO05D006193 0.0e+00 1283.5 808 81.7
Lj1g0025378 Lotus japonicus HOM05D004953 ORTHO05D006193 0.0e+00 1268.1 806 80.9
Medtr7g080880 Medicago truncatula HOM05D004953 ORTHO05D006193 0.0e+00 1254.6 803 79.8
TPR.G35843 Trifolium pratense HOM05D004953 ORTHO05D006193 0.0e+00 1219.9 813 78.2
Psat3g100880 Pisum sativum HOM05D004953 ORTHO05D006193 0.0e+00 1176.4 805 75.7
arahy.Tifrunner.gnm1.ann1.57Z9Z9 Arachis hypogaea HOM05D004953 ORTHO05D006193 0.0e+00 1144.0 866 70.8
RcHm_v2.0_Chr6g0282191 Rosa chinensis HOM05D004953 ORTHO05D006193 6.8e-305 1050.4 808 66.1
MD05G1153500 Malus domestica HOM05D004953 ORTHO05D006193 5.8e-304 1047.3 810 65.9
Prupe.8G186900 Prunus persica HOM05D004953 ORTHO05D006193 1.0e-300 1036.6 805 65.6
FAN27G2958 Fragaria x ananassa HOM05D004953 ORTHO05D006193 1.5e-299 1032.7 806 65.4
FvH4_2g17460 Fragaria vesca HOM05D004953 ORTHO05D006193 1.9e-299 1032.3 806 65.4
FAN24G2388 Fragaria x ananassa HOM05D004953 ORTHO05D006193 2.1e-298 1028.9 806 65.3
Cpa.g.sc8.38 Carica papaya HOM05D004953 ORTHO05D006193 8.1e-298 1026.9 817 64.5
Cfa010574 Carpinus fangiana HOM05D004953 ORTHO05D006193 6.9e-297 1023.8 806 64.9
Eucgr.K00106 Eucalyptus grandis HOM05D004953 ORTHO05D006193 2.0e-296 1022.3 817 63.6
Haze_03508 Corylus avellana HOM05D004953 ORTHO05D006193 4.9e-295 1017.7 806 64.3
FAN15G1962 Fragaria x ananassa HOM05D004953 ORTHO05D006193 9.3e-294 1013.4 807 64.7
Sabra14G0134100 Salix brachista HOM05D004953 ORTHO05D006193 9.3e-294 1013.4 817 63.6
CSS0005222 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 2.7e-293 1011.9 803 63.6
CSS0012001 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 2.7e-293 1011.9 803 63.6
Dinv28790 Davidia involucrata HOM05D004953 ORTHO05D006193 2.7e-293 1011.9 804 64.1
CiPaw.13G055800 Carya illinoinensis HOM05D004953 ORTHO05D006193 3.5e-293 1011.5 819 64.8
Duzib133G0915 Durio zibethinus HOM05D004953 ORTHO05D006193 4.6e-293 1011.1 815 63.9
COL.COLO4_34276 Corchorus olitorius HOM05D004953 ORTHO05D006193 1.3e-292 1009.6 816 64.2
Potri.014G175350 Populus trichocarpa HOM05D004953 ORTHO05D006193 1.3e-292 1009.6 823 63.1
Manes.13G056300 Manihot esculenta HOM05D004953 ORTHO05D006193 1.9e-291 1005.7 810 63.6
GSVIVG01001528001 Vitis vinifera HOM05D004953 ORTHO05D006193 2.5e-291 1005.4 804 63.6
Thecc.01G207300 Theobroma cacao HOM05D004953 ORTHO05D006193 3.3e-291 1005.0 815 64.0
THA.LOC104819011 Tarenaya hassleriana HOM05D004953 ORTHO05D006193 5.6e-291 1004.2 813 63.7
CANSAT01G2219 Cannabis sativa HOM05D004953 ORTHO05D006193 1.5e-288 996.1 816 63.4
Gorai.007G161300 Gossypium raimondii HOM05D004953 ORTHO05D006193 2.5e-283 978.8 816 63.0
TWI36G1252 Tripterygium wilfordii HOM05D004953 ORTHO05D006193 5.6e-283 977.6 818 61.6
Rhsim13G0055000 Rhododendron simsii HOM05D004953 ORTHO05D006193 9.6e-283 976.9 806 61.3
Lj2C1111T4 Lonicera japonica HOM05D004953 ORTHO05D006193 2.8e-282 975.3 804 61.4
Thhalv10005371m.g Eutrema salsugineum HOM05D004953 ORTHO05D006193 4.0e-281 971.5 813 61.0
QL09p045412 Quercus lobata HOM05D004953 ORTHO05D006193 2.0e-280 969.1 854 61.0
AL8G21200 Arabidopsis lyrata HOM05D004953 ORTHO05D006193 1.0e-279 966.8 811 60.8
Migut.D00772 Erythranthe guttata HOM05D004953 ORTHO05D006193 2.5e-278 962.2 807 61.3
Carub.0008s0798 Capsella rubella HOM05D004953 ORTHO05D006193 3.2e-278 961.8 810 60.6
Ciclev10018269m.g Citrus clementina HOM05D004953 ORTHO05D006193 2.7e-277 958.7 810 62.1
CARHR183800 Cardamine hirsuta HOM05D004953 ORTHO05D006193 4.6e-277 958.0 810 60.9
vmacro02841 Vaccinium macrocarpon HOM05D004953 ORTHO05D006193 3.0e-276 955.3 828 59.9
AT5G48390 Arabidopsis thaliana HOM05D004953 ORTHO05D006193 3.9e-276 954.9 810 60.1
Nn1g09452 Nelumbo nucifera HOM05D004953 ORTHO05D006193 9.0e-273 943.7 804 59.1
C07p39140 Brassica napus HOM05D004953 ORTHO05D006193 3.8e-271 938.3 807 59.6
BolC7t44434H Brassica oleracea HOM05D004953 ORTHO05D006193 3.8e-271 938.3 807 59.6
SalBow3G1227 Salvia bowleyana HOM05D004953 ORTHO05D006193 3.8e-271 938.3 813 59.5
Sp2g18750 Schrenkiella parvula HOM05D004953 ORTHO05D006193 5.0e-271 937.9 813 59.8
Atru.BG.40.p Acer truncatum HOM05D004953 ORTHO05D006193 1.1e-270 936.8 805 62.9
A06p39200 Brassica napus HOM05D004953 ORTHO05D006193 1.1e-270 936.8 807 59.5
Cc01_g15850 Coffea canephora HOM05D004953 ORTHO05D006193 4.2e-270 934.9 806 59.6
Aa31LG11G3580 Aethionema arabicum HOM05D004953 ORTHO05D006193 5.5e-270 934.5 825 59.9
Oeu013420.1 Olea europaea HOM05D004953 ORTHO05D006193 2.1e-269 932.6 811 58.7
SHI10219 Sapria himalayana HOM05D004953 ORTHO05D006193 1.1e-267 926.8 832 57.9
Gohir.D11G150400 Gossypium hirsutum HOM05D004953 ORTHO05D006193 1.8e-265 919.5 734 65.1
MELO3C008751.2 Cucumis melo HOM05D004953 ORTHO05D006193 5.3e-265 917.9 784 59.7
CsaV3_2G009520 Cucumis sativus L. HOM05D004953 ORTHO05D006193 5.3e-265 917.9 784 59.6
EL10Ac5g10584 Beta vulgaris HOM05D004953 ORTHO05D006193 2.0e-264 916.0 812 58.1
AUR62028642 Chenopodium quinoa HOM05D004953 ORTHO05D006193 3.4e-264 915.2 807 58.1
HanXRQChr12g0363951 Helianthus annuus HOM05D004953 ORTHO05D006193 2.2e-263 912.5 803 57.5
Hund02809 Selenicereus undatus HOM05D004953 ORTHO05D006193 6.5e-263 911.0 806 59.2
Sed0024263 Sechium edule HOM05D004953 ORTHO05D006193 4.2e-262 908.3 807 58.1
CAN.G1468.3 Capsicum annuum HOM05D004953 ORTHO05D006193 9.4e-262 907.1 806 57.7
Peaxi162Scf02239g00020 Petunia axillaris HOM05D004953 ORTHO05D006193 9.4e-262 907.1 806 55.3
Sc17g0001570 Simmondsia chinensis HOM05D004953 ORTHO05D006193 2.1e-261 906.0 814 58.2
Nitab4.5_0008926g0010 Nicotiana tabacum HOM05D004953 ORTHO05D006193 2.7e-261 905.6 806 56.9
SGA_v2.0_scaffold8G04488 Striga asiatica HOM05D004953 ORTHO05D006193 3.9e-260 901.7 807 58.2
Lsat_1_v5_gn_8_98501 Lactuca sativa HOM05D004953 ORTHO05D006193 7.4e-259 897.5 800 56.9
PGSC0003DMG400021911 Solanum tuberosum HOM05D004953 ORTHO05D006193 2.2e-258 896.0 806 56.3
Solyc09g042760.2 Solanum lycopersicum HOM05D004953 ORTHO05D006193 1.8e-257 892.9 806 56.2
Nitab4.5_0000038g0380 Nicotiana tabacum HOM05D004953 ORTHO05D006193 1.2e-256 890.2 809 56.0
AUR62008065 Chenopodium quinoa HOM05D004953 ORTHO05D006193 1.0e-255 887.1 809 57.0
ECA236G0268 Erigeron canadensis HOM05D004953 ORTHO05D006193 5.7e-251 871.3 803 55.4
Sopen09g015810 Solanum pennellii HOM05D004953 ORTHO05D006193 9.7e-251 870.5 806 55.6
Gohir.A11G144000 Gossypium hirsutum HOM05D004953 ORTHO05D006193 8.2e-250 867.5 692 64.6
Aqoxy2G04177 Aquilegia oxysepala HOM05D004953 ORTHO05D006193 1.9e-246 856.3 774 57.4
MBI10_g23576_MAGBIO Magnolia biondii HOM05D004953 ORTHO05D006193 5.5e-246 854.7 816 56.0
Actinidia04690 Actinidia chinensis HOM05D004953 ORTHO05D006193 1.6e-245 853.2 687 63.3
ClCG11G010960 Citrullus lanatus HOM05D004953 ORTHO05D006193 2.1e-245 852.8 813 56.0
Aa31LG11G8930 Aethionema arabicum HOM05D004953 ORTHO05D006193 7.5e-243 844.3 812 56.2
PSO478G1281 Papaver somniferum HOM05D004953 ORTHO05D006193 2.8e-242 842.4 798 56.3
PSO017G6601 Papaver somniferum HOM05D004953 ORTHO05D006193 1.1e-241 840.5 798 55.8
TAR365G0304 Trochodendron aralioides HOM05D004953 ORTHO05D006193 3.2e-238 828.9 627 66.3
unitig_52.g16794 Utricularia gibba HOM05D004953 ORTHO05D006193 7.0e-217 758.1 811 49.9
Sed0015090 Sechium edule HOM05D004953 ORTHO05D006193 3.1e-212 742.7 805 50.9
Ah.11g050790 Amaranthus hybridus HOM05D004953 ORTHO05D006193 7.0e-209 731.5 654 58.7
BcaC06g30800 Brassica carinata HOM05D004953 ORTHO05D006193 1.1e-206 724.2 706 54.2
DCAR_004775 Daucus carota HOM05D004953 ORTHO05D006193 1.1e-201 707.6 558 63.6
HPP92_001916 Vanilla planifolia HOM05D004953 ORTHO05D006193 1.1e-198 697.6 808 48.0
CDE07G1537 Ceratophyllum demersum HOM05D004953 ORTHO05D006193 7.1e-185 651.7 769 46.6
Lalb_Chr03g0040531 Lupinus albus HOM05D004953 ORTHO05D006193 5.3e-172 609.0 463 70.4
Lalb_Chr03g0040541 Lupinus albus HOM05D004953 ORTHO05D006193 9.6e-166 588.2 360 81.1
ATR0743G003 Amborella trichopoda HOM05D004953 ORTHO05D006193 2.2e-162 577.0 843 40.8
Os01g0890900 Oryza sativa ssp. japonica HOM05D004953 ORTHO05D006193 2.0e-155 553.9 726 42.3
Zm00001eb145140 Zea mays HOM05D004953 ORTHO05D006193 4.8e-149 532.7 733 43.0
SEGI_29467 Sequoiadendron giganteum HOM05D004953 ORTHO05D006193 7.9e-144 515.4 753 38.8
Glyma.09G246350 Glycine max HOM05D004953 ORTHO05D006193 7.2e-137 492.3 287 86.4
CANSAT01G2868 Cannabis sativa HOM05D004953 ORTHO05D006193 1.7e-125 454.5 453 57.6
Actinidia33396 Actinidia chinensis HOM05D004953 ORTHO05D006193 2.4e-124 450.7 426 56.6
SMO201G0221 Selaginella moellendorffii HOM05D004953 ORTHO05D006193 1.1e-113 415.2 764 35.3
Mapoly0032s0035 Marchantia polymorpha HOM05D004953 ORTHO05D006193 2.4e-108 397.5 797 31.4
Pp3c2_410 Physcomitrium patens HOM05D004953 ORTHO05D006193 2.9e-101 374.0 749 33.1
Actinidia23342 Actinidia chinensis HOM05D004953 ORTHO05D006193 2.1e-96 357.8 420 48.8
Actinidia12854 Actinidia chinensis HOM05D004953 ORTHO05D006193 1.1e-87 328.9 261 62.5
Actinidia33395 Actinidia chinensis HOM05D004953 ORTHO05D006193 4.0e-71 273.9 269 55.0
FvH4_2g09600 Fragaria vesca HOM05D004953 ORTHO05D006193 1.5e-46 192.2 340 40.6
FAN24G3373 Fragaria x ananassa HOM05D004953 ORTHO05D006193 1.5e-46 192.2 343 40.5
FAN11G3683 Fragaria x ananassa HOM05D004953 ORTHO05D006193 1.5e-38 165.6 345 34.5
Actinidia23343 Actinidia chinensis HOM05D004953 ORTHO05D006193 2.2e-37 161.8 141 58.9
FvH4_3g38850 Fragaria vesca HOM05D004953 ORTHO05D006193 8.2e-32 143.3 117 67.5
TPR.G1778 Trifolium pratense HOM05D004953 ORTHO05D019267 1.4e-31 142.5 212 43.4
FvH4_4g15200 Fragaria vesca HOM05D004953 ORTHO05D006193 3.4e-30 137.9 131 54.2
Actinidia29995 Actinidia chinensis HOM05D004953 ORTHO05D006193 7.9e-27 126.7 252 36.1
FvH4_6g36680 Fragaria vesca HOM05D004953 ORTHO05D006193 8.8e-26 123.2 128 55.5
TAR365G0721 Trochodendron aralioides HOM05D004953 ORTHO05D006193 2.0e-22 112.1 136 47.8
PRCOL_00006857 Prasinoderma coloniale HOM05D004953 ORTHO05D006193 2.5e-20 105.1 798 22.9
FAN14G2572 Fragaria x ananassa HOM05D004953 ORTHO05D006193 3.2e-20 104.8 73 64.4
FvH4_4g10312 Fragaria vesca HOM05D004953 ORTHO05D006193 5.5e-20 104.0 73 64.4
FvH4_6g27414 Fragaria vesca HOM05D004953 ORTHO05D006193 1.2e-19 102.8 73 63.0
FAN14G2335 Fragaria x ananassa HOM05D004953 ORTHO05D006193 1.6e-19 102.4 132 45.5
FvH4_6g36881 Fragaria vesca HOM05D004953 ORTHO05D006193 8.0e-19 100.1 73 61.6
FvH4_2g12761 Fragaria vesca HOM05D004953 ORTHO05D006193 1.0e-18 99.8 73 61.6
FvH4_7g13151 Fragaria vesca HOM05D004953 ORTHO05D006193 3.0e-18 98.2 67 68.7
FAN15G1853 Fragaria x ananassa HOM05D004953 ORTHO05D006193 5.3e-15 87.4 62 64.5
CSS0012475 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 1.2e-14 86.3 61 62.3
CSS0023073 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 1.7e-13 82.4 61 60.7
FvH4_7g08382 Fragaria vesca HOM05D004953 ORTHO05D006193 1.9e-12 79.0 55 61.8
FvH4_4g15182 Fragaria vesca HOM05D004953 ORTHO05D006193 5.5e-12 77.4 46 73.9
FAN14G1126 Fragaria x ananassa HOM05D004953 ORTHO05D006193 6.1e-11 73.9 55 58.2
TPR.G3742 Trifolium pratense HOM05D004953 ORTHO05D006193 1.0e-10 73.2 39 87.2
FAN09G3899 Fragaria x ananassa HOM05D004953 ORTHO05D006193 1.4e-10 72.8 55 58.2
SMO203G0202 Selaginella moellendorffii HOM05D003498 ORTHO05D006193 1.2e-09 69.7 60 55.0
FAN14G1607 Fragaria x ananassa HOM05D004953 ORTHO05D006193 2.0e-09 68.9 59 71.2
CSS0036997 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 4.4e-09 67.8 67 49.3
CSS0040358 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 7.5e-09 67.0 67 50.7
SMO203G0177 Selaginella moellendorffii HOM05D004953 ORTHO05D006193 1.6e-06 59.3 170 26.5
Peaxi162Scf00132g00233 Petunia axillaris HOM05D001229 ORTHO05D005418 7.7e-06 57.0 90 35.6


User provided reference genes

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