Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G048900 Phaseolus vulgaris HOM05D004013 ORTHO05D004710 1.2e-283 979.2 490 100.0
VMungo1383G0353 Vigna mungo HOM05D004013 ORTHO05D004710 3.0e-271 937.9 490 95.7
Glyma.09G244800 Glycine max HOM05D004013 ORTHO05D004710 1.4e-252 875.9 490 89.6
Glyma.18G248400 Glycine max HOM05D004013 ORTHO05D004710 1.6e-235 819.3 490 85.7
TPR.G29111 Trifolium pratense HOM05D004013 ORTHO05D004710 2.1e-235 818.9 491 83.7
Lj1g0014615 Lotus japonicus HOM05D004013 ORTHO05D004710 4.6e-235 817.8 490 83.9
Ca_08048_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 6.2e-232 807.4 492 83.7
Ca_08054_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 6.2e-232 807.4 492 83.7
Medtr7g081230 Medicago truncatula HOM05D004013 ORTHO05D004710 3.1e-231 805.1 490 83.1
arahy.Tifrunner.gnm1.ann1.LVD0DC Arachis hypogaea HOM05D004013 ORTHO05D004710 5.4e-220 767.7 490 78.2
arahy.Tifrunner.gnm1.ann1.M4STP7 Arachis hypogaea HOM05D004013 ORTHO05D004710 6.6e-218 760.8 490 77.1
Psat0s3112g0040 Pisum sativum HOM05D004013 ORTHO05D004710 2.5e-217 758.8 490 78.4
arahy.Tifrunner.gnm1.ann1.ERJ0Z2 Arachis hypogaea HOM05D004013 ORTHO05D004710 9.6e-217 756.9 501 76.2
Lalb_Chr01g0021691 Lupinus albus HOM05D004013 ORTHO05D004710 3.5e-211 738.4 463 80.1
arahy.Tifrunner.gnm1.ann1.AL59ZJ Arachis hypogaea HOM05D004013 ORTHO05D004710 5.3e-207 724.5 490 75.3
Lalb_Chr03g0040611 Lupinus albus HOM05D004013 ORTHO05D004710 2.7e-203 712.2 462 78.1
Prupe.2G000200 Prunus persica HOM05D004013 ORTHO05D004710 7.4e-193 677.6 490 70.0
Cfa000589 Carpinus fangiana HOM05D004013 ORTHO05D004710 1.4e-191 673.3 502 68.3
MD00G1055200 Malus domestica HOM05D004013 ORTHO05D004710 1.2e-190 670.2 490 68.8
QL05p046231 Quercus lobata HOM05D004013 ORTHO05D004710 1.7e-189 666.4 501 67.9
Thecc.01G234100 Theobroma cacao HOM05D004013 ORTHO05D004710 3.2e-188 662.1 488 68.0
Ciclev10019906m.g Citrus clementina HOM05D004013 ORTHO05D004710 1.2e-187 660.2 490 69.2
MD07G1000400 Malus domestica HOM05D004013 ORTHO05D004710 3.0e-186 655.6 490 67.6
Atru.chr3.2025 Acer truncatum HOM05D004013 ORTHO05D004710 7.4e-185 651.0 490 67.6
Dinv28066 Davidia involucrata HOM05D004013 ORTHO05D004710 1.2e-182 643.7 489 67.1
Duzib264G0158 Durio zibethinus HOM05D004013 ORTHO05D004710 1.3e-181 640.2 491 66.6
GSVIVG01003913001 Vitis vinifera HOM05D004013 ORTHO05D004710 1.7e-181 639.8 495 66.7
Duzib147G1378 Durio zibethinus HOM05D004013 ORTHO05D004710 1.1e-180 637.1 492 66.5
CiPaw.10G057600 Carya illinoinensis HOM05D004013 ORTHO05D004710 5.5e-180 634.8 490 66.1
Gohir.A12G002200 Gossypium hirsutum HOM05D004013 ORTHO05D004710 2.7e-179 632.5 494 66.0
Gohir.D12G001900 Gossypium hirsutum HOM05D004013 ORTHO05D004710 1.1e-177 627.1 494 65.2
Gorai.008G001300 Gossypium raimondii HOM05D004013 ORTHO05D004710 5.7e-177 624.8 494 64.6
COL.COLO4_06916 Corchorus olitorius HOM05D004013 ORTHO05D004710 3.7e-176 622.1 499 64.5
Sed0016347 Sechium edule HOM05D004013 ORTHO05D004710 6.3e-176 621.3 485 65.8
Hma1.2p1_0940F.1_g239620 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 3.1e-175 619.0 490 62.9
Potri.007G147100 Populus trichocarpa HOM05D004013 ORTHO05D004710 3.1e-175 619.0 474 66.9
TWI63G0479 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 4.1e-175 618.6 451 67.6
Eucgr.K03157 Eucalyptus grandis HOM05D004013 ORTHO05D004710 6.9e-175 617.8 495 65.5
Potri.017G000500 Populus trichocarpa HOM05D004013 ORTHO05D004710 6.9e-175 617.8 490 64.5
CSS0003826 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 1.5e-174 616.7 492 63.4
CSS0048139 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 4.5e-174 615.1 492 63.2
TAR365G0341 Trochodendron aralioides HOM05D004013 ORTHO05D004710 5.9e-174 614.8 492 63.2
MELO3C008520.2 Cucumis melo HOM05D004013 ORTHO05D004710 1.0e-173 614.0 478 64.4
TWI15G0551 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 1.4e-172 610.1 451 66.7
vmacro09116 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 1.4e-172 610.1 494 62.6
CsaV3_2G011360 Cucumis sativus L. HOM05D004013 ORTHO05D004710 1.2e-171 607.1 479 64.5
CANSAT78G0639 Cannabis sativa HOM05D004013 ORTHO05D004710 2.0e-169 599.7 442 67.2
CiPaw.09G068100 Carya illinoinensis HOM05D004013 ORTHO05D004710 4.8e-168 595.1 400 73.2
TAR633G1686 Trochodendron aralioides HOM05D004013 ORTHO05D004710 1.5e-166 590.1 498 61.8
Manes.01G009000 Manihot esculenta HOM05D004013 ORTHO05D004710 4.5e-166 588.6 400 72.8
Haze_06261 Corylus avellana HOM05D004013 ORTHO05D004710 9.4e-164 580.9 743 46.4
Rhsim09G0091900 Rhododendron simsii HOM05D004013 ORTHO05D004710 6.1e-163 578.2 566 56.4
Sp4g26220 Schrenkiella parvula HOM05D004013 ORTHO05D004710 6.7e-162 574.7 489 59.3
AL4G43020 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 1.5e-161 573.5 489 58.9
Lj3C865T7 Lonicera japonica HOM05D004013 ORTHO05D004710 1.5e-161 573.5 488 60.2
Lj6A740G51 Lonicera japonica HOM05D004013 ORTHO05D004710 4.4e-161 572.0 497 60.0
ECA232G0201 Erigeron canadensis HOM05D004013 ORTHO05D004710 9.7e-161 570.9 477 61.0
AT2G44140 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 1.4e-159 567.0 489 58.7
Aa31LG1G25800 Aethionema arabicum HOM05D004013 ORTHO05D004710 2.4e-159 566.2 490 58.6
PSO732G0206 Papaver somniferum HOM05D004013 ORTHO05D004710 9.1e-159 564.3 461 61.4
PSO675G0050 Papaver somniferum HOM05D004013 ORTHO05D004710 1.6e-158 563.5 461 60.5
Lsat_1_v5_gn_8_45601 Lactuca sativa HOM05D004013 ORTHO05D004710 3.5e-158 562.4 479 63.3
Cpa.g.sc9.235 Carica papaya HOM05D004013 ORTHO05D004710 4.5e-158 562.0 405 68.4
DCAR_023584 Daucus carota HOM05D004013 ORTHO05D004710 4.5e-158 562.0 460 60.9
ATR0706G248 Amborella trichopoda HOM05D004013 ORTHO05D004710 5.9e-158 561.6 499 59.1
Nn1g09391 Nelumbo nucifera HOM05D004013 ORTHO05D004710 7.7e-158 561.2 439 64.0
ECA233G0032 Erigeron canadensis HOM05D004013 ORTHO05D004710 6.5e-157 558.1 477 60.4
PGR142G2472 Punica granatum HOM05D004013 ORTHO05D004710 3.2e-156 555.8 445 63.4
Sp5g03230 Schrenkiella parvula HOM05D004013 ORTHO05D004710 3.6e-155 552.4 496 56.2
AL5G42130 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 3.0e-154 549.3 494 56.7
AT3G59950 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 1.2e-153 547.4 494 56.1
Hund22667 Selenicereus undatus HOM05D004013 ORTHO05D004710 6.3e-152 541.6 459 61.2
CDE06G1594 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 1.1e-151 540.8 479 59.1
HanXRQChr08g0212421 Helianthus annuus HOM05D004013 ORTHO05D004710 7.0e-151 538.1 403 66.3
Ah.07g203370 Amaranthus hybridus HOM05D004013 ORTHO05D004710 2.7e-150 536.2 501 58.5
MBI15_g08971_MAGBIO Magnolia biondii HOM05D004013 ORTHO05D004710 5.9e-150 535.0 417 64.7
FAN24G3388 Fragaria x ananassa HOM05D004013 ORTHO05D004710 1.0e-149 534.3 418 64.8
FvH4_2g06800 Fragaria vesca HOM05D004013 ORTHO05D004710 1.7e-149 533.5 419 65.2
Carub.0005s2667 Capsella rubella HOM05D004013 ORTHO05D004710 3.8e-149 532.3 445 59.1
vmacro10687 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 6.5e-149 531.6 563 52.0
Os04g0682000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 8.5e-149 531.2 491 56.8
Migut.L00278 Erythranthe guttata HOM05D004013 ORTHO05D004710 1.9e-148 530.0 462 59.5
FAN20G2928 Fragaria x ananassa HOM05D004013 ORTHO05D004710 3.2e-148 529.3 419 65.2
HanXRQChr12g0363401 Helianthus annuus HOM05D004013 ORTHO05D004710 3.2e-148 529.3 398 65.8
FAN27G1923 Fragaria x ananassa HOM05D004013 ORTHO05D004710 1.6e-147 526.9 418 63.6
CARHR139300 Cardamine hirsuta HOM05D004013 ORTHO05D004710 2.1e-147 526.6 434 59.9
CARHR170260 Cardamine hirsuta HOM05D004013 ORTHO05D004710 2.1e-147 526.6 436 61.9
CDE04G0030 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 4.7e-147 525.4 479 58.2
BcaC07g40400 Brassica carinata HOM05D004013 ORTHO05D004710 6.1e-147 525.0 496 55.4
PGSC0003DMG400032144 Solanum tuberosum HOM05D004013 ORTHO05D004710 6.1e-147 525.0 486 57.2
AUR62002510 Chenopodium quinoa HOM05D004013 ORTHO05D004710 8.0e-147 524.6 518 55.8
EL10Ac3g06192 Beta vulgaris HOM05D004013 ORTHO05D004710 1.0e-146 524.2 496 56.2
Os03g0391000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 1.8e-146 523.5 474 57.4
FAN15G0687 Fragaria x ananassa HOM05D004013 ORTHO05D004710 4.0e-146 522.3 392 66.3
RcHm_v2.0_Chr6g0259021 Rosa chinensis HOM05D004013 ORTHO05D004710 5.2e-146 521.9 415 64.8
Carub.0004s2669 Capsella rubella HOM05D004013 ORTHO05D004710 6.8e-146 521.5 403 62.8
Nitab4.5_0001568g0070 Nicotiana tabacum HOM05D004013 ORTHO05D004710 6.8e-146 521.5 407 64.6
BraA09t40658Z Brassica rapa HOM05D004013 ORTHO05D004710 8.8e-146 521.2 489 56.0
Oeu011024.1 Olea europaea HOM05D004013 ORTHO05D004710 8.8e-146 521.2 397 63.5
Thhalv10005940m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 1.2e-145 520.8 403 62.8
BcaC02g10096 Brassica carinata HOM05D004013 ORTHO05D004710 2.0e-145 520.0 430 59.8
BolC4t24846H Brassica oleracea HOM05D004013 ORTHO05D004710 2.0e-145 520.0 430 59.8
Migut.L00578 Erythranthe guttata HOM05D004013 ORTHO05D004710 2.0e-145 520.0 395 65.1
CAN.G140.48 Capsicum annuum HOM05D004013 ORTHO05D004710 2.6e-145 519.6 485 56.1
Nitab4.5_0005132g0050 Nicotiana tabacum HOM05D004013 ORTHO05D004710 2.6e-145 519.6 407 64.4
C04p32840 Brassica napus HOM05D004013 ORTHO05D004710 3.4e-145 519.2 430 59.5
Sopen01g002230 Solanum pennellii HOM05D004013 ORTHO05D004710 4.4e-145 518.8 483 56.5
Solyc01g006230.3 Solanum lycopersicum HOM05D004013 ORTHO05D004710 9.8e-145 517.7 483 56.3
AUR62023683 Chenopodium quinoa HOM05D004013 ORTHO05D004710 2.2e-144 516.5 403 64.0
BcaB02g08204 Brassica carinata HOM05D004013 ORTHO05D004710 2.8e-144 516.2 411 61.3
CSS0004368 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 4.9e-144 515.4 448 60.0
A04p01980 Brassica napus HOM05D004013 ORTHO05D004710 1.4e-143 513.8 430 58.8
HPP92_020809 Vanilla planifolia HOM05D004013 ORTHO05D004710 3.1e-143 512.7 493 55.6
BraA04t15923Z Brassica rapa HOM05D004013 ORTHO05D004710 7.0e-143 511.5 428 59.8
Zm00001eb065800 Zea mays HOM05D004013 ORTHO05D004710 1.2e-142 510.8 486 56.6
SalBow7G0073 Salvia bowleyana HOM05D004013 ORTHO05D004710 2.0e-142 510.0 540 52.6
BcaB02g08917 Brassica carinata HOM05D004013 ORTHO05D004710 1.3e-141 507.3 493 55.0
A09p52290 Brassica napus HOM05D004013 ORTHO05D004710 1.3e-141 507.3 514 53.3
BolC8t51099H Brassica oleracea HOM05D004013 ORTHO05D004710 1.3e-141 507.3 497 55.1
A05p04250 Brassica napus HOM05D004013 ORTHO05D004710 2.3e-141 506.5 467 56.5
Sed0011939 Sechium edule HOM05D004013 ORTHO05D004710 2.3e-141 506.5 364 68.1
BraA05t19410Z Brassica rapa HOM05D004013 ORTHO05D004710 3.8e-141 505.8 467 56.5
ClCG06G010000 Citrullus lanatus HOM05D004013 ORTHO05D004710 6.6e-141 505.0 362 68.2
BcaC02g12335 Brassica carinata HOM05D004013 ORTHO05D004710 8.6e-141 504.6 466 56.7
C04p05030 Brassica napus HOM05D004013 ORTHO05D004710 8.6e-141 504.6 466 56.7
BolC4t22136H Brassica oleracea HOM05D004013 ORTHO05D004710 8.6e-141 504.6 466 56.7
MSTRG.23493 Avicennia marina HOM05D004013 ORTHO05D004710 1.5e-140 503.8 507 55.0
Thhalv10001432m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 2.1e-139 500.0 403 61.3
BcaC07g40539 Brassica carinata HOM05D004013 ORTHO05D004710 4.7e-139 498.8 403 61.8
SHI01175 Sapria himalayana HOM05D004013 ORTHO05D004710 6.8e-138 495.0 502 55.2
Ah.13g073110 Amaranthus hybridus HOM05D004013 ORTHO05D004710 8.9e-138 494.6 402 61.9
SGA_v2.0_scaffold3G01797 Striga asiatica HOM05D004013 ORTHO05D004710 4.4e-137 492.3 465 56.6
SGA_v2.0_scaffold37G14795 Striga asiatica HOM05D004013 ORTHO05D004710 9.8e-137 491.1 405 61.0
Zm00001eb433950 Zea mays HOM05D004013 ORTHO05D004710 1.8e-135 486.9 373 64.9
DCAR_026793 Daucus carota HOM05D004013 ORTHO05D004710 3.2e-135 486.1 402 61.9
SEGI_37986 Sequoiadendron giganteum HOM05D004013 ORTHO05D004710 1.7e-133 480.3 459 55.1
Oeu034368.2 Olea europaea HOM05D004013 ORTHO05D004710 3.1e-130 469.5 592 46.5
unitig_748.g8760 Utricularia gibba HOM05D004013 ORTHO05D004710 8.9e-130 468.0 484 53.7
Dinv18636 Davidia involucrata HOM05D004013 ORTHO05D004710 4.6e-126 455.7 318 70.4
THA.LOC104808419 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 5.0e-125 452.2 311 70.1
Pp3c11_22820 Physcomitrium patens HOM05D004013 ORTHO05D004710 3.6e-123 446.0 401 56.1
Peaxi162Scf00441g00621 Petunia axillaris HOM05D004013 ORTHO05D004710 3.7e-120 436.0 403 56.8
Pp3c7_280 Physcomitrium patens HOM05D004013 ORTHO05D004710 1.9e-119 433.7 401 53.6
Sc08g0007990 Simmondsia chinensis HOM05D004013 ORTHO05D004710 5.4e-119 432.2 380 58.7
Mapoly0153s0038 Marchantia polymorpha HOM05D004013 ORTHO05D004710 5.6e-116 422.2 450 49.6
SMO145G0104 Selaginella moellendorffii HOM05D004013 ORTHO05D004710 4.4e-105 386.0 376 52.9
Oeu053147.1 Olea europaea HOM05D004013 ORTHO05D004710 4.3e-92 342.8 256 65.6
Actinidia29462 Actinidia chinensis HOM05D004013 ORTHO05D004710 3.8e-80 303.1 219 66.2
Hma1.2p1_1910F.1_g307280 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 1.4e-79 301.2 265 57.0
Zm00001eb419970 Zea mays HOM05D004013 ORTHO05D004710 7.1e-79 298.9 202 68.8
Actinidia29461 Actinidia chinensis HOM05D004013 ORTHO05D004710 2.7e-78 297.0 219 68.0
Sabra17G0005400 Salix brachista HOM05D004013 ORTHO05D004710 9.6e-76 288.5 274 54.0
C08p34940 Brassica napus HOM05D004013 ORTHO05D004710 1.2e-70 271.6 219 61.2
Zm00001eb264230 Zea mays HOM05D004013 ORTHO05D004710 3.4e-65 253.4 238 54.6
CBR_g21952 Chara braunii HOM05D004013 ORTHO05D004710 1.5e-60 238.0 312 43.3
Actinidia36638 Actinidia chinensis HOM05D004013 ORTHO05D004710 2.0e-52 211.1 414 38.4
PRCOL_00001711 Prasinoderma coloniale HOM05D004013 ORTHO05D004710 1.4e-50 204.9 500 30.8
Oeu037862.1 Olea europaea HOM05D004013 ORTHO05D004710 9.1e-50 202.2 283 41.3
C08p34950 Brassica napus HOM05D004013 ORTHO05D004710 5.7e-36 156.4 157 52.2
arahy.Tifrunner.gnm1.ann1.MVA4LE Arachis hypogaea HOM05D004013 ORTHO05D004710 6.3e-35 152.9 122 67.2
THA.LOC104804900 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 3.8e-32 143.7 203 42.9
unitig_32.g11897 Utricularia gibba HOM05D004013 ORTHO05D004710 5.0e-32 143.3 269 37.9
MCO13G568 Micromonas commoda HOM05D004013 ORTHO05D004710 1.6e-30 138.3 286 32.2
arahy.Tifrunner.gnm1.ann1.AC7664 Arachis hypogaea HOM05D004013 ORTHO05D004710 4.9e-27 126.7 97 66.0
Cre12.g510100 Chlamydomonas reinhardtii HOM05D004013 ORTHO05D004710 4.9e-27 126.7 654 22.9
Actinidia03474 Actinidia chinensis HOM05D004013 ORTHO05D004710 2.7e-25 120.9 129 48.8
Peaxi162Scf00271g00518 Petunia axillaris HOM05D004013 ORTHO05D004710 4.5e-25 120.2 121 56.2
ClCG06G009970 Citrullus lanatus HOM05D004013 ORTHO05D004710 5.0e-24 116.7 80 71.2
Actinidia03477 Actinidia chinensis HOM05D004013 ORTHO05D004710 1.1e-18 99.0 107 50.5
Atru.chr3.2624 Acer truncatum HOM05D004013 ORTHO05D004710 6.8e-13 79.7 236 29.7
ATR0807G232 Amborella trichopoda HOM05D004013 ORTHO05D004710 7.5e-12 76.3 60 56.7
Cfa022146 Carpinus fangiana HOM05D004013 ORTHO05D124891 2.9e-11 74.3 349 25.2
ATR0807G053 Amborella trichopoda HOM05D004013 ORTHO05D004710 1.9e-10 71.6 47 68.1
CBR_g50173 Chara braunii HOM05D004013 ORTHO05D004710 1.1e-07 62.4 89 43.8


User provided reference genes

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