Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G277800 Phaseolus vulgaris HOM05D004012 ORTHO05D004752 1.2e-247 859.4 437 100.0
VMungo0720G3057 Vigna mungo HOM05D004012 ORTHO05D004752 1.1e-237 826.2 437 95.9
Glyma.02G005000 Glycine max HOM05D004012 ORTHO05D004752 1.7e-233 812.4 437 93.4
Lj6g0017875 Lotus japonicus HOM05D004012 ORTHO05D004752 2.1e-223 778.9 437 88.8
Glyma.10G003500 Glycine max HOM05D004012 ORTHO05D004752 9.4e-216 753.4 404 92.8
Lalb_Chr03g0037441 Lupinus albus HOM05D004012 ORTHO05D004752 2.3e-214 748.8 436 86.5
Lalb_Chr19g0127941 Lupinus albus HOM05D004012 ORTHO05D004752 4.0e-214 748.0 436 86.7
Lalb_Chr01g0020921 Lupinus albus HOM05D004012 ORTHO05D004752 9.8e-213 743.4 436 84.6
Ca_12160_v3 Cicer arietinum L. HOM05D004012 ORTHO05D004752 3.5e-210 734.9 437 83.1
Medtr1g041405 Medicago truncatula HOM05D004012 ORTHO05D004752 2.2e-204 715.7 456 80.0
arahy.Tifrunner.gnm1.ann1.5Q2P9B Arachis hypogaea HOM05D004012 ORTHO05D004752 6.3e-204 714.1 437 83.1
arahy.Tifrunner.gnm1.ann1.EZQ64B Arachis hypogaea HOM05D004012 ORTHO05D004752 6.3e-204 714.1 437 83.1
Psat6g104000 Pisum sativum HOM05D004012 ORTHO05D004752 1.8e-203 712.6 457 79.2
TPR.G25177 Trifolium pratense HOM05D004012 ORTHO05D004752 2.4e-195 685.6 451 77.2
CiPaw.15G186100 Carya illinoinensis HOM05D004012 ORTHO05D004752 8.6e-185 650.6 434 74.2
FvH4_5g20280 Fragaria vesca HOM05D004012 ORTHO05D004752 1.2e-181 640.2 435 74.0
RcHm_v2.0_Chr7g0205341 Rosa chinensis HOM05D004012 ORTHO05D004752 1.2e-181 640.2 435 74.0
FAN18G2241 Fragaria x ananassa HOM05D004012 ORTHO05D004752 3.4e-181 638.6 435 73.8
MELO3C023211.2 Cucumis melo HOM05D004012 ORTHO05D004752 5.8e-181 637.9 433 74.1
FAN08G1522 Fragaria x ananassa HOM05D004012 ORTHO05D004752 2.9e-180 635.6 435 73.6
Dinv19127 Davidia involucrata HOM05D004012 ORTHO05D004752 6.4e-180 634.4 432 75.0
Prupe.5G058000 Prunus persica HOM05D004012 ORTHO05D004752 2.4e-179 632.5 435 74.0
MD04G1052500 Malus domestica HOM05D004012 ORTHO05D004752 5.4e-179 631.3 436 73.6
FAN04G0350 Fragaria x ananassa HOM05D004012 ORTHO05D004752 1.2e-178 630.2 435 73.1
CsaV3_2G019600 Cucumis sativus L. HOM05D004012 ORTHO05D004752 1.7e-177 626.3 433 73.2
Hma1.2p1_3052F.1_g332140 Hydrangea macrophylla HOM05D004012 ORTHO05D004752 3.0e-177 625.5 430 73.3
Dinv26833 Davidia involucrata HOM05D004012 ORTHO05D004752 1.5e-176 623.2 436 72.9
Hma1.2p1_0513F.1_g169610 Hydrangea macrophylla HOM05D004012 ORTHO05D004752 2.5e-176 622.5 430 73.0
Sc16g0009950 Simmondsia chinensis HOM05D004012 ORTHO05D004752 1.2e-175 620.2 432 71.5
CANSAT54G0087 Cannabis sativa HOM05D004012 ORTHO05D004752 1.6e-175 619.8 435 71.0
ClCG02G000230 Citrullus lanatus HOM05D004012 ORTHO05D004752 1.6e-175 619.8 445 71.2
CSS0025733 Camellia sinensis var. sinensis HOM05D004012 ORTHO05D004752 2.8e-175 619.0 430 71.9
MD06G1047700 Malus domestica HOM05D004012 ORTHO05D004752 8.1e-175 617.5 436 72.0
Hund07194 Selenicereus undatus HOM05D004012 ORTHO05D004752 2.4e-174 615.9 432 70.1
Manes.13G154600 Manihot esculenta HOM05D004012 ORTHO05D004752 3.1e-174 615.5 432 70.6
AUR62000581 Chenopodium quinoa HOM05D004012 ORTHO05D004752 5.2e-174 614.8 432 70.8
Potri.017G122600 Populus trichocarpa HOM05D004012 ORTHO05D004752 5.2e-174 614.8 432 71.3
Nn5g27391 Nelumbo nucifera HOM05D004012 ORTHO05D004752 2.6e-173 612.5 430 70.7
AUR62006937 Chenopodium quinoa HOM05D004012 ORTHO05D004752 3.4e-173 612.1 432 70.4
Atru.chr3.1437 Acer truncatum HOM05D004012 ORTHO05D004752 7.6e-173 610.9 430 71.4
GSVIVG01000257001 Vitis vinifera HOM05D004012 ORTHO05D004752 1.9e-171 606.3 408 74.0
Gohir.D10G106700 Gossypium hirsutum HOM05D004012 ORTHO05D004752 3.2e-171 605.5 439 71.1
Gorai.011G116800 Gossypium raimondii HOM05D004012 ORTHO05D004752 3.2e-171 605.5 439 71.1
Gohir.A10G084900 Gossypium hirsutum HOM05D004012 ORTHO05D004752 1.2e-170 603.6 439 70.8
Sed0016932 Sechium edule HOM05D004012 ORTHO05D004752 1.6e-170 603.2 435 71.5
Sopen04g017040 Solanum pennellii HOM05D004012 ORTHO05D004752 3.5e-170 602.1 433 70.2
Eucgr.I00032 Eucalyptus grandis HOM05D004012 ORTHO05D004752 1.5e-168 596.7 429 69.5
TAR628G1247 Trochodendron aralioides HOM05D004012 ORTHO05D004752 4.3e-168 595.1 460 65.9
Oeu034405.1 Olea europaea HOM05D004012 ORTHO05D004752 8.1e-167 590.9 443 68.6
CAN.G10.8 Capsicum annuum HOM05D004012 ORTHO05D004752 1.4e-166 590.1 433 69.7
SalBow1G0131 Salvia bowleyana HOM05D004012 ORTHO05D004752 1.4e-166 590.1 435 68.5
TWI31G0701 Tripterygium wilfordii HOM05D004012 ORTHO05D004752 2.4e-166 589.3 432 69.9
Rhsim01G0147700 Rhododendron simsii HOM05D004012 ORTHO05D004752 9.0e-166 587.4 461 65.9
PGR119G2008 Punica granatum HOM05D004012 ORTHO05D004752 2.2e-164 582.8 436 66.3
ECA238G2948 Erigeron canadensis HOM05D004012 ORTHO05D004752 4.9e-164 581.6 432 67.8
EL10Ac4g09708 Beta vulgaris HOM05D004012 ORTHO05D004752 1.1e-163 580.5 433 68.1
MSTRG.9397 Avicennia marina HOM05D004012 ORTHO05D004752 5.4e-163 578.2 440 65.9
Aqoxy5G01862 Aquilegia oxysepala HOM05D004012 ORTHO05D004752 4.6e-162 575.1 430 67.0
HanXRQChr13g0402671 Helianthus annuus HOM05D004012 ORTHO05D004752 2.3e-161 572.8 426 68.1
Migut.D01135 Erythranthe guttata HOM05D004012 ORTHO05D004752 3.0e-161 572.4 419 66.1
MSTRG.4671 Avicennia marina HOM05D004012 ORTHO05D004752 3.9e-161 572.0 437 65.2
Cc07_g20580 Coffea canephora HOM05D004012 ORTHO05D004752 4.9e-156 555.1 400 70.0
Cc07_g20480 Coffea canephora HOM05D004012 ORTHO05D004752 3.2e-155 552.4 391 70.8
MBI10_g20270_MAGBIO Magnolia biondii HOM05D004012 ORTHO05D004752 7.1e-155 551.2 430 64.4
CDE05G2224 Ceratophyllum demersum HOM05D004012 ORTHO05D004752 1.3e-151 540.4 431 63.3
Potri.004G092400 Populus trichocarpa HOM05D004012 ORTHO05D004752 1.3e-151 540.4 400 68.2
Thhalv10013606m.g Eutrema salsugineum HOM05D004012 ORTHO05D004752 2.1e-151 539.7 430 62.3
Aa31LG11G11210 Aethionema arabicum HOM05D004012 ORTHO05D004752 2.6e-149 532.7 451 58.3
DCAR_009624 Daucus carota HOM05D004012 ORTHO05D004752 4.5e-149 531.9 435 63.7
unitig_0.g354 Utricularia gibba HOM05D004012 ORTHO05D004752 5.8e-149 531.6 434 62.7
Sp6g25900 Schrenkiella parvula HOM05D004012 ORTHO05D004752 1.0e-148 530.8 430 61.2
Eucgr.I00085 Eucalyptus grandis HOM05D004012 ORTHO05D004752 2.9e-148 529.3 382 68.3
Duzib147G1077 Durio zibethinus HOM05D004012 ORTHO05D004752 3.8e-148 528.9 357 75.4
Sabra04G0062100 Salix brachista HOM05D004012 ORTHO05D004752 3.8e-148 528.9 442 62.4
Carub.0006s1668 Capsella rubella HOM05D004012 ORTHO05D004752 7.1e-147 524.6 431 60.3
BcaB08g36680 Brassica carinata HOM05D004012 ORTHO05D004752 2.1e-146 523.1 430 60.9
C09p58260 Brassica napus HOM05D004012 ORTHO05D004752 7.9e-146 521.2 444 59.7
ATR1089G159 Amborella trichopoda HOM05D004012 ORTHO05D004752 1.3e-145 520.4 443 61.4
Lsat_1_v5_gn_0_9061 Lactuca sativa HOM05D004012 ORTHO05D004752 1.3e-145 520.4 426 64.3
BolC9t58691H Brassica oleracea HOM05D004012 ORTHO05D004752 8.7e-145 517.7 446 59.0
A10p21150 Brassica napus HOM05D004012 ORTHO05D004752 1.1e-144 517.3 450 58.9
BraA10t44178Z Brassica rapa HOM05D004012 ORTHO05D004752 1.1e-144 517.3 451 58.8
AT5G18420 Arabidopsis thaliana HOM05D004012 ORTHO05D004752 3.7e-143 512.3 437 58.6
CARHR194600 Cardamine hirsuta HOM05D004012 ORTHO05D004752 6.2e-143 511.5 434 60.1
TWI79G0644 Tripterygium wilfordii HOM05D004012 ORTHO05D004752 2.0e-141 506.5 432 63.4
TAR376G0099 Trochodendron aralioides HOM05D004012 ORTHO05D004752 1.7e-140 503.4 382 66.8
vmacro21003 Vaccinium macrocarpon HOM05D004012 ORTHO05D004752 1.7e-140 503.4 416 63.0
BraA03t10211Z Brassica rapa HOM05D004012 ORTHO05D004752 2.2e-140 503.1 459 57.5
BolC3t13514H Brassica oleracea HOM05D004012 ORTHO05D004752 6.5e-140 501.5 459 57.3
THA.LOC104806688 Tarenaya hassleriana HOM05D004012 ORTHO05D004752 3.2e-139 499.2 434 59.2
AL6G29670 Arabidopsis lyrata HOM05D004012 ORTHO05D004752 5.5e-139 498.4 383 64.8
HPP92_005635 Vanilla planifolia HOM05D004012 ORTHO05D004752 5.5e-139 498.4 349 71.1
CDE05G3168 Ceratophyllum demersum HOM05D004012 ORTHO05D004752 1.2e-138 497.3 440 60.7
SGA_v2.0_scaffold14G07064 Striga asiatica HOM05D004012 ORTHO05D004752 1.2e-138 497.3 435 59.3
Duzib187G0370 Durio zibethinus HOM05D004012 ORTHO05D004752 2.7e-138 496.1 368 69.3
PSO210G3799 Papaver somniferum HOM05D004012 ORTHO05D004752 6.7e-137 491.5 430 59.8
Ciclev10005092m.g Citrus clementina HOM05D004012 ORTHO05D004752 8.7e-137 491.1 392 62.8
Thecc.01G145600 Theobroma cacao HOM05D004012 ORTHO05D004752 8.7e-137 491.1 383 66.1
PSO761G0211 Papaver somniferum HOM05D004012 ORTHO05D004752 1.5e-136 490.3 430 60.2
Lsat_1_v5_gn_5_118080 Lactuca sativa HOM05D004012 ORTHO05D004752 1.6e-135 486.9 429 61.3
Sabra17G0104000 Salix brachista HOM05D004012 ORTHO05D004752 1.6e-135 486.9 394 62.7
Sabra17G0101400 Salix brachista HOM05D004012 ORTHO05D004752 4.8e-135 485.3 394 62.4
Duzib264G1318 Durio zibethinus HOM05D004012 ORTHO05D004752 1.5e-133 480.3 344 71.2
Actinidia30855 Actinidia chinensis HOM05D004012 ORTHO05D004752 3.4e-133 479.2 434 61.1
Mapoly0005s0018 Marchantia polymorpha HOM05D004012 ORTHO05D004752 2.5e-131 473.0 432 56.2
Actinidia12239 Actinidia chinensis HOM05D004012 ORTHO05D004752 5.1e-129 465.3 307 73.3
Pp3c20_12330 Physcomitrium patens HOM05D004012 ORTHO05D004752 5.1e-129 465.3 431 56.1
MBI06_g32154_MAGBIO Magnolia biondii HOM05D004012 ORTHO05D004752 8.8e-129 464.5 416 57.0
Actinidia14359 Actinidia chinensis HOM05D004012 ORTHO05D004752 4.1e-126 455.7 464 55.6
C03p10330 Brassica napus HOM05D004012 ORTHO05D004752 7.7e-125 451.4 428 55.1
Os11g0240900 Oryza sativa ssp. japonica HOM05D004012 ORTHO05D004752 3.8e-124 449.1 429 55.5
Lj4A823T24 Lonicera japonica HOM05D004012 ORTHO05D004752 5.5e-123 445.3 299 73.2
Pp3c24_6950 Physcomitrium patens HOM05D004012 ORTHO05D004752 1.2e-122 444.1 431 53.6
FAN13G1241 Fragaria x ananassa HOM05D004012 ORTHO05D004752 6.1e-122 441.8 331 65.9
CBR_g22449 Chara braunii HOM05D004012 ORTHO05D004752 8.2e-119 431.4 435 54.3
Ah.02g118090 Amaranthus hybridus HOM05D004012 ORTHO05D004752 1.2e-117 427.6 384 57.8
Zm00001eb167940 Zea mays HOM05D004012 ORTHO05D004752 9.4e-115 417.9 433 53.6
Zm00001eb112220 Zea mays HOM05D004012 ORTHO05D004752 1.2e-114 417.5 439 52.6
Pp3c23_1780 Physcomitrium patens HOM05D004012 ORTHO05D004752 1.5e-112 410.6 352 59.1
SMO196G0070 Selaginella moellendorffii HOM05D004012 ORTHO05D004752 4.0e-97 359.4 280 66.8
DCAR_019944 Daucus carota HOM05D004012 ORTHO05D004752 1.3e-95 354.4 322 58.4
BcaC04g18693 Brassica carinata HOM05D004012 ORTHO05D004752 1.2e-93 347.8 432 48.1
Nitab4.5_0000064g0090 Nicotiana tabacum HOM05D004012 ORTHO05D004752 2.3e-92 343.6 278 61.2
PGSC0003DMG401004242 Solanum tuberosum HOM05D004012 ORTHO05D004752 5.0e-92 342.4 278 61.5
Solyc04g024500.3 Solanum lycopersicum HOM05D004012 ORTHO05D004752 1.1e-91 341.3 278 60.8
Peaxi162Scf00621g00412 Petunia axillaris HOM05D004012 ORTHO05D004752 2.0e-88 330.5 278 58.6
Oeu036288.1 Olea europaea HOM05D004012 ORTHO05D004752 9.8e-88 328.2 292 59.2
Cc07_g20540 Coffea canephora HOM05D004012 ORTHO05D004752 1.6e-85 320.9 352 49.7
Nitab4.5_0005261g0010 Nicotiana tabacum HOM05D004012 ORTHO05D004752 2.3e-84 317.0 278 58.3
Cpa.g.sc138.55 Carica papaya HOM05D004012 ORTHO05D004752 4.3e-83 312.8 230 65.2
AagrBONN_evm.TU.Sc2ySwM_228.2915 Anthoceros agrestis HOM05D004012 ORTHO05D004752 1.0e-81 308.1 326 47.2
Haze_19373 Corylus avellana HOM05D004012 ORTHO05D004752 5.2e-73 279.3 157 92.4
QL10p034897 Quercus lobata HOM05D004012 ORTHO05D004752 3.2e-70 270.0 163 73.0
Nitab4.5_0000064g0100 Nicotiana tabacum HOM05D004012 ORTHO05D004752 2.1e-69 267.3 177 78.0
Ah.06g188310 Amaranthus hybridus HOM05D004012 ORTHO05D004752 2.7e-69 266.9 192 66.1
Solyc04g024510.3 Solanum lycopersicum HOM05D004012 ORTHO05D004752 2.7e-69 266.9 157 86.6
Nitab4.5_0005261g0020 Nicotiana tabacum HOM05D004012 ORTHO05D004752 4.6e-69 266.2 156 86.5
Peaxi162Scf00621g00413 Petunia axillaris HOM05D004012 ORTHO05D004752 1.9e-67 260.8 155 85.8
Lju41A56G29 Lonicera japonica HOM05D004012 ORTHO05D004752 1.4e-65 254.6 365 41.9
SEGI_14103 Sequoiadendron giganteum HOM05D004012 ORTHO05D004752 5.8e-64 249.2 156 81.4
HPP92_005645 Vanilla planifolia HOM05D004012 ORTHO05D004752 3.7e-63 246.5 145 86.2
TPR.G34339 Trifolium pratense HOM05D004012 ORTHO05D004752 4.6e-61 239.6 486 36.4
Zm00001eb138450 Zea mays HOM05D004012 ORTHO05D004752 7.3e-59 232.3 281 45.2
Cre17.g726800 Chlamydomonas reinhardtii HOM05D004012 ORTHO05D004752 1.2e-58 231.5 517 35.8
Os12g0197900 Oryza sativa ssp. japonica HOM05D004012 ORTHO05D004752 2.4e-57 227.3 141 80.9
THA.LOC104799828 Tarenaya hassleriana HOM05D004012 ORTHO05D004752 2.9e-55 220.3 184 64.7
HPP92_005646 Vanilla planifolia HOM05D004012 ORTHO05D004752 1.9e-54 217.6 236 49.2
PGSC0003DMG402004242 Solanum tuberosum HOM05D004012 ORTHO05D004752 2.4e-54 217.2 133 84.2
Lsat_1_v5_gn_2_19540 Lactuca sativa HOM05D004012 ORTHO05D004752 3.9e-52 209.9 182 61.0
DCAR_015558 Daucus carota HOM05D004012 ORTHO05D004752 3.6e-50 203.4 122 82.8
SHI03102 Sapria himalayana HOM05D004012 ORTHO05D004752 4.2e-46 189.9 155 58.1
BcaNung06869 Brassica carinata HOM05D004012 ORTHO05D004752 1.6e-45 188.0 132 78.0
HPP92_005679 Vanilla planifolia HOM05D004012 ORTHO05D004752 4.8e-42 176.4 302 38.1
Cpa.g.sc138.54 Carica papaya HOM05D004012 ORTHO05D004752 1.7e-39 167.9 99 88.9
QL10p034885 Quercus lobata HOM05D004012 ORTHO05D000004 6.4e-39 166.0 106 80.2
SHI03103 Sapria himalayana HOM05D004012 ORTHO05D004752 1.9e-38 164.5 178 54.5
Haze_27454 Corylus avellana HOM05D004012 ORTHO05D004752 9.6e-35 152.1 129 58.9
Lju41A56T30 Lonicera japonica HOM05D004012 ORTHO05D004752 5.5e-30 136.3 146 52.7
QL10p034900 Quercus lobata HOM05D004012 ORTHO05D004752 2.5e-27 127.5 119 52.1
VMungo0647G1024 Vigna mungo HOM05D004443 ORTHO05D005421 7.4e-27 125.9 70 92.9
MCO14G229 Micromonas commoda HOM05D004012 ORTHO05D004752 4.6e-21 106.7 215 35.3
A03p08840 Brassica napus HOM05D004012 ORTHO05D004752 1.0e-20 105.5 68 80.9
Ciclev10006318m.g Citrus clementina HOM05D004012 ORTHO05D004752 8.7e-20 102.4 58 91.4
Oeu046377.1 Olea europaea HOM05D004012 ORTHO05D004752 4.8e-18 96.7 56 91.1
Actinidia12240 Actinidia chinensis HOM05D004012 ORTHO05D004752 2.9e-15 87.4 98 50.0
PSO761G0569 Papaver somniferum HOM05D004012 ORTHO05D004752 1.0e-12 79.0 57 68.4
PRCOL_00001851 Prasinoderma coloniale HOM05D004012 ORTHO05D004752 1.0e-12 79.0 257 28.0


User provided reference genes

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