Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G264700 Phaseolus vulgaris HOM05D003921 ORTHO05D004394 4.4e-129 464.9 289 100.0
Phvul.007G180200 Phaseolus vulgaris HOM05D003921 ORTHO05D004394 2.7e-126 455.7 289 97.9
Glyma.20G233800 Glycine max HOM05D003921 ORTHO05D004394 1.3e-107 393.7 288 83.7
VMungo0720G1998 Vigna mungo HOM05D003921 ORTHO05D004394 1.4e-106 390.2 290 87.2
Ca_20760_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 5.8e-97 358.2 291 82.5
TPR.G27266 Trifolium pratense HOM05D003921 ORTHO05D004394 1.3e-96 357.1 290 78.6
TPR.G19495 Trifolium pratense HOM05D002828 ORTHO05D003457 3.8e-96 355.5 289 79.6
Ca_31306_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 1.4e-95 353.6 289 82.0
Glyma.10G154500 Glycine max HOM05D003921 ORTHO05D004394 2.7e-94 349.4 288 71.9
Lj3g0006890 Lotus japonicus HOM05D003921 ORTHO05D004394 8.2e-91 337.8 287 70.0
arahy.Tifrunner.gnm1.ann1.HSUB65 Arachis hypogaea HOM05D003921 ORTHO05D004394 1.2e-89 334.0 274 71.5
Haze_17961 Corylus avellana HOM05D003921 ORTHO05D004394 2.9e-88 329.3 286 63.6
Lalb_Chr10g0096111 Lupinus albus HOM05D003921 ORTHO05D004394 8.5e-88 327.8 287 65.2
Cfa018157 Carpinus fangiana HOM05D003921 ORTHO05D004394 1.1e-87 327.4 286 63.3
CiPaw.15G078700 Carya illinoinensis HOM05D003921 ORTHO05D004394 6.1e-86 321.6 289 75.4
TAR626G1747 Trochodendron aralioides HOM05D003921 ORTHO05D004394 1.0e-85 320.9 296 73.0
Medtr5g028350 Medicago truncatula HOM05D003921 ORTHO05D004394 1.8e-85 320.1 289 76.5
Psat2g139240 Pisum sativum HOM05D003921 ORTHO05D004394 8.8e-85 317.8 289 76.5
Cpa.g.sc3.273 Carica papaya HOM05D003921 ORTHO05D004394 9.7e-84 314.3 287 60.3
QL02p008779 Quercus lobata HOM05D003921 ORTHO05D004394 5.3e-82 308.5 279 67.0
MD01G1185600 Malus domestica HOM05D003921 ORTHO05D004394 4.5e-81 305.4 284 75.4
Lalb_Chr06g0167921 Lupinus albus HOM05D003921 ORTHO05D004394 1.7e-80 303.5 287 61.0
Prupe.2G282000 Prunus persica HOM05D003921 ORTHO05D004394 5.0e-80 302.0 284 72.2
COL.COLO4_14179 Corchorus olitorius HOM05D003921 ORTHO05D004394 8.5e-80 301.2 284 67.6
Ca_25165_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 1.1e-79 300.8 287 75.6
MBI05_g15474_MAGBIO Magnolia biondii HOM05D003921 ORTHO05D004394 1.4e-79 300.4 280 61.4
Hma1.2p1_0654F.1_g196410 Hydrangea macrophylla HOM05D003921 ORTHO05D004394 4.2e-79 298.9 289 58.5
Gohir.A07G039500 Gossypium hirsutum HOM05D003921 ORTHO05D004394 5.5e-79 298.5 284 60.6
Thecc.03G161300 Theobroma cacao HOM05D003921 ORTHO05D004394 9.4e-79 297.7 287 59.9
Sed0011284 Sechium edule HOM05D003921 ORTHO05D004394 2.7e-78 296.2 292 67.5
Gohir.D07G043600 Gossypium hirsutum HOM05D003921 ORTHO05D004394 4.7e-78 295.4 288 60.1
MD07G1257700 Malus domestica HOM05D003921 ORTHO05D004394 6.1e-78 295.0 282 74.1
Potri.015G131200 Populus trichocarpa HOM05D003921 ORTHO05D004394 6.1e-78 295.0 290 57.9
Gorai.001G046600 Gossypium raimondii HOM05D003921 ORTHO05D004394 1.0e-77 294.3 288 60.1
CSS0011813 Camellia sinensis var. sinensis HOM05D003921 ORTHO05D004394 1.4e-77 293.9 295 69.2
Medtr8g075400 Medicago truncatula HOM05D003921 ORTHO05D004394 1.8e-77 293.5 289 74.4
ClCG01G005120 Citrullus lanatus HOM05D003921 ORTHO05D004394 3.0e-77 292.7 258 69.4
Dinv22928 Davidia involucrata HOM05D003921 ORTHO05D004394 5.1e-77 292.0 290 58.6
TWI23G0331 Tripterygium wilfordii HOM05D003921 ORTHO05D004394 1.1e-76 290.8 306 62.4
TWI14G0513 Tripterygium wilfordii HOM05D003921 ORTHO05D004394 1.5e-76 290.4 305 62.6
Cc02_g03920 Coffea canephora HOM05D003921 ORTHO05D004394 3.3e-76 289.3 288 66.7
Manes.06G137800 Manihot esculenta HOM05D003921 ORTHO05D004394 1.7e-75 287.0 283 59.4
PGR042G0045 Punica granatum HOM05D003921 ORTHO05D004394 2.2e-75 286.6 283 65.4
Atru.chr1.637 Acer truncatum HOM05D003921 ORTHO05D004394 6.3e-75 285.0 285 65.3
Sed0026547 Sechium edule HOM05D003921 ORTHO05D004394 8.2e-75 284.6 295 64.4
Rhsim11G0028600 Rhododendron simsii HOM05D003921 ORTHO05D004394 3.1e-74 282.7 293 57.3
FvH4_7g28160 Fragaria vesca HOM05D003921 ORTHO05D004394 4.1e-74 282.3 257 69.3
PSO782G4293 Papaver somniferum HOM05D003921 ORTHO05D004394 5.3e-74 282.0 289 66.8
FAN06G4038 Fragaria x ananassa HOM05D003921 ORTHO05D004394 7.0e-74 281.6 259 68.7
vmacro18851 Vaccinium macrocarpon HOM05D003921 ORTHO05D004394 7.0e-74 281.6 299 55.5
PSO478G1412 Papaver somniferum HOM05D003921 ORTHO05D004394 1.2e-73 280.8 282 67.4
CSS0049059 Camellia sinensis var. sinensis HOM05D003921 ORTHO05D004394 3.5e-73 279.3 270 57.4
FAN03G1144 Fragaria x ananassa HOM05D003921 ORTHO05D004394 3.5e-73 279.3 248 70.2
RcHm_v2.0_Chr1g0375101 Rosa chinensis HOM05D003921 ORTHO05D004394 3.5e-73 279.3 257 64.6
Aqoxy1G01610 Aquilegia oxysepala HOM05D003921 ORTHO05D004394 5.9e-73 278.5 288 63.9
Duzib084G0641 Durio zibethinus HOM05D003921 ORTHO05D004394 7.7e-73 278.1 282 58.9
FAN10G0634 Fragaria x ananassa HOM05D003921 ORTHO05D004394 1.0e-72 277.7 242 71.1
FAN01G0440 Fragaria x ananassa HOM05D003921 ORTHO05D004394 2.2e-72 276.6 242 70.7
FAN06G2146 Fragaria x ananassa HOM05D003921 ORTHO05D004394 2.2e-72 276.6 242 70.7
FAN03G3435 Fragaria x ananassa HOM05D003921 ORTHO05D004394 3.8e-72 275.8 242 70.7
MELO3C005417.2 Cucumis melo HOM05D003921 ORTHO05D004394 6.5e-72 275.0 299 58.5
SGA_v2.0_scaffold126G33894 Striga asiatica HOM05D003921 ORTHO05D004394 1.1e-71 274.2 286 62.2
Migut.J00413 Erythranthe guttata HOM05D003921 ORTHO05D004394 1.4e-71 273.9 290 56.2
Lalb_Chr17g0338581 Lupinus albus HOM05D003921 ORTHO05D004394 1.9e-71 273.5 282 56.7
TAR636G2246 Trochodendron aralioides HOM05D003921 ORTHO05D004394 4.2e-71 272.3 291 57.0
unitig_744.g24672 Utricularia gibba HOM05D003921 ORTHO05D004394 7.2e-71 271.6 284 64.1
A01p32500 Brassica napus HOM05D003921 ORTHO05D004394 1.2e-70 270.8 297 58.6
CDE07G0272 Ceratophyllum demersum HOM05D003921 ORTHO05D004394 2.1e-70 270.0 285 57.2
CsaV3_5G005400 Cucumis sativus L. HOM05D003921 ORTHO05D004394 8.0e-70 268.1 300 57.7
Ciclev10005521m.g Citrus clementina HOM05D003921 ORTHO05D004394 1.0e-69 267.7 261 59.0
Aa31LG5G22200 Aethionema arabicum HOM05D003921 ORTHO05D004394 1.4e-69 267.3 265 58.5
BraA01t03380Z Brassica rapa HOM05D003921 ORTHO05D004394 1.4e-69 267.3 297 58.6
Aa31LG5G22190 Aethionema arabicum HOM05D003921 ORTHO05D004394 2.3e-69 266.5 291 56.0
A05p26040 Brassica napus HOM05D003921 ORTHO05D004394 5.2e-69 265.4 295 58.6
Eucgr.E01709 Eucalyptus grandis HOM05D003921 ORTHO05D004394 5.2e-69 265.4 300 54.3
BraA05t21488Z Brassica rapa HOM05D003921 ORTHO05D004394 6.7e-69 265.0 289 59.2
BcaB04g20506 Brassica carinata HOM05D003921 ORTHO05D004394 8.8e-69 264.6 266 62.0
DCAR_020219 Daucus carota HOM05D003921 ORTHO05D004394 1.1e-68 264.2 301 58.5
BcaB06g26378 Brassica carinata HOM05D003921 ORTHO05D004394 3.3e-68 262.7 285 59.3
HanXRQChr05g0141401 Helianthus annuus HOM05D003921 ORTHO05D004394 4.4e-68 262.3 263 62.0
BcaC09g49188 Brassica carinata HOM05D003921 ORTHO05D004394 5.7e-68 261.9 292 60.3
C01p41660 Brassica napus HOM05D003921 ORTHO05D004394 5.7e-68 261.9 292 60.3
BolC1t04121H Brassica oleracea HOM05D003921 ORTHO05D004394 5.7e-68 261.9 292 60.3
BraA03t13433Z Brassica rapa HOM05D003921 ORTHO05D004394 9.7e-68 261.2 292 59.9
HanXRQChr08g0224051 Helianthus annuus HOM05D003921 ORTHO05D004394 9.7e-68 261.2 263 61.2
BcaC05g28029 Brassica carinata HOM05D003921 ORTHO05D004394 1.3e-67 260.8 297 66.0
ATR0626G386 Amborella trichopoda HOM05D003921 ORTHO05D004394 1.7e-67 260.4 282 57.8
Rhsim07G0193400 Rhododendron simsii HOM05D003921 ORTHO05D004394 3.7e-67 259.2 282 54.6
BolC5t32786H Brassica oleracea HOM05D003921 ORTHO05D004394 4.8e-67 258.8 297 65.7
A03p42870 Brassica napus HOM05D003921 ORTHO05D004394 1.4e-66 257.3 292 59.9
BcaC01g03432 Brassica carinata HOM05D003921 ORTHO05D004394 2.4e-66 256.5 269 62.1
Nitab4.5_0005477g0070 Nicotiana tabacum HOM05D003921 ORTHO05D004394 2.4e-66 256.5 298 57.4
BolC3t17533H Brassica oleracea HOM05D003921 ORTHO05D004394 3.1e-66 256.1 263 64.6
CARHR098540 Cardamine hirsuta HOM05D003921 ORTHO05D004394 3.1e-66 256.1 286 67.1
Thhalv10021245m.g Eutrema salsugineum HOM05D003921 ORTHO05D004394 4.1e-66 255.8 295 56.3
Solyc01g006090.3 Solanum lycopersicum HOM05D003921 ORTHO05D004394 4.1e-66 255.8 287 54.4
C03p52650 Brassica napus HOM05D003921 ORTHO05D004394 7.0e-66 255.0 263 62.7
AT3G22660 Arabidopsis thaliana HOM05D003921 ORTHO05D004394 9.1e-66 254.6 264 56.1
CSS0023430 Camellia sinensis var. sinensis HOM05D003921 ORTHO05D004394 9.1e-66 254.6 270 54.4
Lj1P984T37 Lonicera japonica HOM05D003921 ORTHO05D004394 9.1e-66 254.6 265 56.6
Nitab4.5_0001620g0040 Nicotiana tabacum HOM05D003921 ORTHO05D004394 7.7e-65 251.5 270 60.0
BcaB04g19210 Brassica carinata HOM05D003921 ORTHO05D004394 1.0e-64 251.1 258 61.6
Solyc01g006170.4 Solanum lycopersicum HOM05D003921 ORTHO05D004394 1.0e-64 251.1 294 53.1
Carub.0003s2281 Capsella rubella HOM05D003921 ORTHO05D004394 3.8e-64 249.2 290 52.8
Sopen01g002180 Solanum pennellii HOM05D003921 ORTHO05D004394 5.0e-64 248.8 290 53.1
Lsat_1_v5_gn_6_96180 Lactuca sativa HOM05D003921 ORTHO05D004394 6.5e-64 248.4 262 53.8
PGSC0003DMG400032192 Solanum tuberosum HOM05D003921 ORTHO05D004394 8.5e-64 248.1 290 53.1
THA.LOC104808294 Tarenaya hassleriana HOM05D003921 ORTHO05D004394 8.5e-64 248.1 291 52.6
AL3G36960 Arabidopsis lyrata HOM05D003921 ORTHO05D004394 2.5e-63 246.5 284 52.8
PGSC0003DMG400032141 Solanum tuberosum HOM05D003921 ORTHO05D004394 3.2e-63 246.1 297 51.9
Sc03g0002240 Simmondsia chinensis HOM05D003921 ORTHO05D004394 5.5e-63 245.4 290 52.4
ECA234G0656 Erigeron canadensis HOM05D003921 ORTHO05D004394 7.2e-63 245.0 298 52.7
Zm00001eb235000 Zea mays HOM05D003921 ORTHO05D004394 1.4e-61 240.7 292 59.2
Dinv22984 Davidia involucrata HOM05D003921 ORTHO05D004394 4.0e-61 239.2 287 51.9
CANSAT11G2317 Cannabis sativa HOM05D003921 ORTHO05D004394 4.4e-60 235.7 244 55.3
Zm00001eb104900 Zea mays HOM05D003921 ORTHO05D004394 4.4e-60 235.7 252 63.1
Ah.06g188120 Amaranthus hybridus HOM05D003921 ORTHO05D004394 9.7e-60 234.6 296 57.1
EL10Ac4g09457 Beta vulgaris HOM05D003921 ORTHO05D004394 2.2e-59 233.4 252 54.4
Ciclev10006627m.g Citrus clementina HOM05D003921 ORTHO05D004394 3.7e-59 232.6 273 60.8
CAN.G140.50 Capsicum annuum HOM05D003921 ORTHO05D004394 4.8e-59 232.3 296 58.4
Ah.06g188100 Amaranthus hybridus HOM05D003921 ORTHO05D004394 1.2e-57 227.6 292 56.5
AUR62000393 Chenopodium quinoa HOM05D003921 ORTHO05D004394 5.9e-57 225.3 287 47.4
Sp3g20420 Schrenkiella parvula HOM05D003921 ORTHO05D004394 5.9e-57 225.3 289 50.5
Peaxi162Scf00441g00013 Petunia axillaris HOM05D003921 ORTHO05D004394 2.5e-55 219.9 265 51.7
Rhsim11G0028700 Rhododendron simsii HOM05D003921 ORTHO05D004394 1.2e-54 217.6 291 50.2
Ah.06g188150 Amaranthus hybridus HOM05D003921 ORTHO05D004394 4.7e-54 215.7 277 56.7
FAN10G0556 Fragaria x ananassa HOM05D003921 ORTHO05D004394 4.7e-54 215.7 193 68.9
ECA233G5254 Erigeron canadensis HOM05D003921 ORTHO05D004394 1.8e-53 213.8 239 56.1
Os07g0475800 Oryza sativa ssp. japonica HOM05D003921 ORTHO05D004394 2.3e-53 213.4 252 59.9
AUR62006749 Chenopodium quinoa HOM05D003921 ORTHO05D004394 5.7e-52 208.8 289 51.6
Ca_27419_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 9.8e-52 208.0 183 85.8
Nitab4.5_0000249g0460 Nicotiana tabacum HOM05D003921 ORTHO05D004394 4.1e-50 202.6 272 49.6
Oeu019922.1 Olea europaea HOM05D003921 ORTHO05D004394 1.9e-47 193.7 247 58.7
CDE04G0151 Ceratophyllum demersum HOM05D003921 ORTHO05D004394 4.7e-46 189.1 206 60.2
SHI13875 Sapria himalayana HOM05D003921 ORTHO05D004394 5.2e-45 185.7 273 48.4
Sopen01g002090 Solanum pennellii HOM05D003921 ORTHO05D004394 5.9e-41 172.2 209 52.2
Nitab4.5_0004389g0020 Nicotiana tabacum HOM05D003921 ORTHO05D004394 2.3e-40 170.2 301 39.5
SMO174G0035 Selaginella moellendorffii HOM05D003921 ORTHO05D004394 2.3e-40 170.2 260 43.5
Nn1g08099 Nelumbo nucifera HOM05D003921 ORTHO05D004394 1.1e-39 167.9 123 68.3
MSTRG.14093 Avicennia marina HOM05D003921 ORTHO05D004394 2.5e-39 166.8 177 66.7
HPP92_008700 Vanilla planifolia HOM05D003921 ORTHO05D004394 2.8e-38 163.3 122 64.8
BcaC09g49189 Brassica carinata HOM05D003921 ORTHO05D004394 4.7e-38 162.5 185 70.3
Oeu019920.1 Olea europaea HOM05D003921 ORTHO05D004394 6.1e-38 162.2 319 48.6
Pp3c6_25210 Physcomitrium patens HOM05D003921 ORTHO05D004394 6.1e-38 162.2 276 38.0
DCAR_018123 Daucus carota HOM05D003921 ORTHO05D004394 3.1e-37 159.8 273 48.0
Nn1g01220 Nelumbo nucifera HOM05D003921 ORTHO05D004394 2.9e-35 153.3 118 63.6
Eucgr.K01460 Eucalyptus grandis HOM05D003921 ORTHO05D004394 3.7e-35 152.9 129 61.2
GSVIVG01018514001 Vitis vinifera HOM05D003921 ORTHO05D004394 3.7e-35 152.9 288 39.2
Oeu021724.1 Olea europaea HOM05D003921 ORTHO05D004394 1.1e-34 151.4 273 41.0
Ah.06g188070 Amaranthus hybridus HOM05D003921 ORTHO05D004394 1.2e-33 147.9 187 56.7
Mapoly0140s0011 Marchantia polymorpha HOM05D003921 ORTHO05D004394 7.8e-33 145.2 251 39.4
Oeu023230.1 Olea europaea HOM05D003921 ORTHO05D004394 1.9e-31 140.6 281 37.4
RcHm_v2.0_Chr5g0027461 Rosa chinensis HOM05D003921 ORTHO05D017011 7.3e-31 138.7 125 57.6
MSTRG.14095 Avicennia marina HOM05D003921 ORTHO05D004394 4.7e-30 136.0 117 65.0
MSTRG.5717 Avicennia marina HOM05D003921 ORTHO05D004394 1.8e-29 134.0 187 59.9
AagrBONN_evm.TU.Sc2ySwM_228.1082 Anthoceros agrestis HOM05D003921 ORTHO05D004394 3.7e-27 126.3 284 33.5
Hund09280 Selenicereus undatus HOM05D003921 ORTHO05D004394 3.5e-25 119.8 117 61.5
Hund09282 Selenicereus undatus HOM05D003921 ORTHO05D004394 3.5e-25 119.8 117 61.5
PRCOL_00003036 Prasinoderma coloniale HOM05D003921 ORTHO05D004394 3.0e-24 116.7 235 31.1
Ca_29708_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 1.5e-23 114.4 83 80.7
ATR0564G120 Amborella trichopoda HOM05D003921 ORTHO05D004394 1.2e-22 111.3 196 41.3
Nn4g26407 Nelumbo nucifera HOM05D003921 ORTHO05D004394 1.2e-22 111.3 110 52.7
CBR_g18581 Chara braunii HOM05D001161 ORTHO05D000497 3.6e-22 109.8 264 34.5
Actinidia39598 Actinidia chinensis HOM05D003921 ORTHO05D004394 1.1e-18 98.2 97 56.7
Cre07.g351750 Chlamydomonas reinhardtii HOM05D003921 ORTHO05D004394 1.4e-18 97.8 247 36.4
Actinidia25037 Actinidia chinensis HOM05D003921 ORTHO05D004394 3.2e-18 96.7 63 73.0
MCO16G303 Micromonas commoda HOM05D003921 ORTHO05D004394 5.4e-18 95.9 206 35.0
Prupe.2G115300 Prunus persica HOM05D003921 ORTHO05D004394 5.4e-18 95.9 281 33.1
Actinidia31394 Actinidia chinensis HOM05D003921 ORTHO05D004394 6.6e-16 89.0 74 66.2
Nn4g26401 Nelumbo nucifera HOM05D003921 ORTHO05D004394 1.5e-15 87.8 65 67.7
Ah.06g188140 Amaranthus hybridus HOM05D003921 ORTHO05D004394 9.6e-15 85.1 100 58.0
Actinidia13554 Actinidia chinensis HOM05D003921 ORTHO05D004394 1.1e-13 81.6 55 72.7
Ah.06g188080 Amaranthus hybridus HOM05D003921 ORTHO05D004394 5.2e-13 79.3 88 58.0
Gohir.D12G264333 Gossypium hirsutum HOM05D003921 ORTHO05D004394 1.7e-11 74.3 267 28.5
Gorai.008G283700 Gossypium raimondii HOM05D003921 ORTHO05D004394 1.4e-10 71.2 274 29.9
Oeu039213.1 Olea europaea HOM05D003921 ORTHO05D004394 5.4e-10 69.3 73 56.2
FvH4_1g22470 Fragaria vesca HOM05D003475 ORTHO05D035452 1.7e-08 64.3 49 67.3
Dinv10307 Davidia involucrata HOM05D003921 ORTHO05D004394 1.9e-07 60.8 35 80.0
Prupe.2G115400 Prunus persica HOM05D003921 ORTHO05D004394 7.3e-07 58.9 60 61.7
DCAR_013591 Daucus carota HOM05D003921 ORTHO05D004394 2.8e-06 57.0 101 40.6


User provided reference genes

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