Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G217300 Phaseolus vulgaris HOM05D003317 ORTHO05D003696 1.1e-65 253.1 123 100.0
Phvul.003G131200 Phaseolus vulgaris HOM05D003317 ORTHO05D003696 2.1e-40 169.1 109 78.9
VMungo1215G0865 Vigna mungo HOM05D003317 ORTHO05D003696 4.5e-38 161.4 109 74.3
Glyma.17G049600 Glycine max HOM05D003317 ORTHO05D003696 1.9e-33 146.0 109 67.9
Lj6g0021845 Lotus japonicus HOM05D003317 ORTHO05D003696 1.3e-32 143.3 114 64.0
Medtr2g041610 Medicago truncatula HOM05D003317 ORTHO05D003696 4.0e-31 138.3 109 63.3
Lalb_Chr23g0276391 Lupinus albus HOM05D003317 ORTHO05D003696 9.0e-31 137.1 109 63.3
Psat1g134160 Pisum sativum HOM05D003317 ORTHO05D003696 1.5e-30 136.3 109 64.2
VMungo1309G0541 Vigna mungo HOM05D003317 ORTHO05D003696 1.5e-30 136.3 109 63.3
arahy.Tifrunner.gnm1.ann1.MFQ8D7 Arachis hypogaea HOM05D003317 ORTHO05D003696 2.0e-30 136.0 109 62.4
Phvul.009G227500 Phaseolus vulgaris HOM05D003317 ORTHO05D003696 5.8e-30 134.4 109 62.4
Lalb_Chr07g0181161 Lupinus albus HOM05D003317 ORTHO05D003696 1.0e-29 133.7 108 63.0
TPR.G28585 Trifolium pratense HOM05D003317 ORTHO05D003696 1.0e-29 133.7 109 63.3
Glyma.13G110100 Glycine max HOM05D003317 ORTHO05D003696 3.2e-28 128.6 98 65.3
Glyma.15G177400 Glycine max HOM05D003317 ORTHO05D003696 2.7e-27 125.6 99 64.6
CiPaw.03G207100 Carya illinoinensis HOM05D003317 ORTHO05D003696 1.3e-26 123.2 107 58.9
QL11p000685 Quercus lobata HOM05D003317 ORTHO05D003696 1.3e-26 123.2 106 59.4
arahy.Tifrunner.gnm1.ann1.C19Y0U Arachis hypogaea HOM05D003317 ORTHO05D003696 5.1e-26 121.3 119 55.5
arahy.Tifrunner.gnm1.ann1.7WMI9V Arachis hypogaea HOM05D003317 ORTHO05D003696 1.1e-25 120.2 119 55.5
TAR626G1452 Trochodendron aralioides HOM05D003317 ORTHO05D003696 1.9e-25 119.4 106 61.3
TAR626G1699 Trochodendron aralioides HOM05D003317 ORTHO05D003696 1.9e-25 119.4 106 61.3
arahy.Tifrunner.gnm1.ann1.81HHLD Arachis hypogaea HOM05D003317 ORTHO05D003696 3.3e-25 118.6 109 56.9
Haze_26007 Corylus avellana HOM05D003317 ORTHO05D003696 4.3e-25 118.2 107 57.9
TPR.G9461 Trifolium pratense HOM05D003317 ORTHO05D003696 7.4e-25 117.5 112 54.5
Atru.chr7.1699 Acer truncatum HOM05D003317 ORTHO05D003696 1.6e-24 116.3 107 57.9
FAN19G2419 Fragaria x ananassa HOM05D003317 ORTHO05D003696 2.2e-24 115.9 109 54.1
FAN28G0340 Fragaria x ananassa HOM05D003317 ORTHO05D003696 2.2e-24 115.9 109 54.1
FvH4_1g08600 Fragaria vesca HOM05D003317 ORTHO05D003696 3.7e-24 115.2 109 53.2
FAN23G1713 Fragaria x ananassa HOM05D003317 ORTHO05D003696 3.7e-24 115.2 109 54.1
Sabra06G0111300 Salix brachista HOM05D003317 ORTHO05D003696 3.7e-24 115.2 107 57.0
Manes.16G095800 Manihot esculenta HOM05D003317 ORTHO05D003696 8.2e-24 114.0 107 56.1
Lj4g0026519 Lotus japonicus HOM05D003317 ORTHO05D003696 1.4e-23 113.2 116 51.7
TAR624G0435 Trochodendron aralioides HOM05D003317 ORTHO05D003696 4.1e-23 111.7 114 54.4
Cfa002996 Carpinus fangiana HOM05D003317 ORTHO05D003696 9.0e-23 110.5 107 56.1
Lsat_1_v5_gn_7_35060 Lactuca sativa HOM05D003317 ORTHO05D003696 1.5e-22 109.8 108 50.9
Ciclev10007604m.g Citrus clementina HOM05D003317 ORTHO05D003696 4.5e-22 108.2 107 55.1
Medtr4g125440 Medicago truncatula HOM05D003317 ORTHO05D003696 4.5e-22 108.2 114 51.8
Potri.006G142200 Populus trichocarpa HOM05D003317 ORTHO05D003696 4.5e-22 108.2 107 57.0
RcHm_v2.0_Chr2g0094821 Rosa chinensis HOM05D003317 ORTHO05D003696 4.5e-22 108.2 109 52.3
Hund08778 Selenicereus undatus HOM05D003317 ORTHO05D003696 5.9e-22 107.8 119 47.9
Actinidia29929 Actinidia chinensis HOM05D003317 ORTHO05D003696 2.2e-21 105.9 107 52.3
Eucgr.C00817 Eucalyptus grandis HOM05D003317 ORTHO05D003696 2.9e-21 105.5 107 55.1
Psat4g017800 Pisum sativum HOM05D003317 ORTHO05D003696 3.8e-21 105.1 114 49.1
Medtr4g125410 Medicago truncatula HOM05D003317 ORTHO05D003696 5.0e-21 104.8 114 50.9
AT2G06040 Arabidopsis thaliana HOM05D003317 ORTHO05D003696 6.5e-21 104.4 118 45.8
Dinv41844 Davidia involucrata HOM05D003317 ORTHO05D003696 6.5e-21 104.4 112 52.7
Psat4g017760 Pisum sativum HOM05D003317 ORTHO05D003696 6.5e-21 104.4 109 50.5
Cfa002995 Carpinus fangiana HOM05D003317 ORTHO05D003696 8.5e-21 104.0 107 55.1
Ca_21319_v3 Cicer arietinum L. HOM05D003317 ORTHO05D003696 8.5e-21 104.0 106 54.7
Glyma.09G069401 Glycine max HOM05D003317 ORTHO05D003696 8.5e-21 104.0 95 57.9
THA.LOC104815331 Tarenaya hassleriana HOM05D003317 ORTHO05D003696 8.5e-21 104.0 116 45.7
HanXRQChr09g0237821 Helianthus annuus HOM05D003317 ORTHO05D003696 1.9e-20 102.8 109 48.6
Thecc.09G078000 Theobroma cacao HOM05D003317 ORTHO05D003696 3.2e-20 102.1 112 50.9
ECA240G4381 Erigeron canadensis HOM05D003317 ORTHO05D003696 7.2e-20 100.9 109 45.9
PGSC0003DMG400013008 Solanum tuberosum HOM05D003317 ORTHO05D003696 9.3e-20 100.5 106 48.1
SHI33751 Sapria himalayana HOM05D003317 ORTHO05D003696 1.6e-19 99.8 107 49.5
Sopen07g021250 Solanum pennellii HOM05D003317 ORTHO05D003696 2.1e-19 99.4 107 47.7
Cc06_g12060 Coffea canephora HOM05D003317 ORTHO05D003696 2.7e-19 99.0 107 44.9
CAN.G498.3 Capsicum annuum HOM05D003317 ORTHO05D003696 6.1e-19 97.8 112 45.5
CAN.G63.8 Capsicum annuum HOM05D003317 ORTHO05D003696 6.1e-19 97.8 112 45.5
CsaV3_1G040990 Cucumis sativus L. HOM05D003317 ORTHO05D003696 6.1e-19 97.8 112 46.4
MD15G1216800 Malus domestica HOM05D003317 ORTHO05D003696 1.0e-18 97.1 107 48.6
Peaxi162Scf00127g00131 Petunia axillaris HOM05D003317 ORTHO05D003696 1.0e-18 97.1 107 46.7
CARHR103720 Cardamine hirsuta HOM05D003317 ORTHO05D003696 1.8e-18 96.3 109 45.9
AUR62028939 Chenopodium quinoa HOM05D003317 ORTHO05D003696 1.8e-18 96.3 104 51.0
AL3G43680 Arabidopsis lyrata HOM05D003317 ORTHO05D003696 2.3e-18 95.9 109 45.0
MELO3C015517.2 Cucumis melo HOM05D003317 ORTHO05D003696 2.3e-18 95.9 112 47.3
AUR62025246 Chenopodium quinoa HOM05D003317 ORTHO05D003696 3.9e-18 95.1 104 50.0
Lj1g0018915 Lotus japonicus HOM05D003317 ORTHO05D003696 3.9e-18 95.1 118 45.8
PGR142G0733 Punica granatum HOM05D003317 ORTHO05D003696 8.8e-18 94.0 107 47.7
Carub.0003s2717 Capsella rubella HOM05D003317 ORTHO05D003696 1.1e-17 93.6 109 43.1
TWI34G1043 Tripterygium wilfordii HOM05D003317 ORTHO05D003696 1.1e-17 93.6 107 47.7
MBI19_g11829_MAGBIO Magnolia biondii HOM05D003317 ORTHO05D003696 1.9e-17 92.8 113 46.0
Sp3g24620 Schrenkiella parvula HOM05D003317 ORTHO05D003696 2.5e-17 92.4 107 46.7
Dinv42387 Davidia involucrata HOM05D003317 ORTHO05D003696 3.3e-17 92.0 107 50.5
Gohir.A06G076100 Gossypium hirsutum HOM05D003317 ORTHO05D003696 3.3e-17 92.0 107 48.6
HPP92_004371 Vanilla planifolia HOM05D003317 ORTHO05D003696 3.3e-17 92.0 106 45.3
Ah.09g231590 Amaranthus hybridus HOM05D003317 ORTHO05D003696 4.3e-17 91.7 112 46.4
BcaB06g26884 Brassica carinata HOM05D003317 ORTHO05D003696 4.3e-17 91.7 116 44.8
Duzib168G0118 Durio zibethinus HOM05D003317 ORTHO05D003696 4.3e-17 91.7 123 43.1
Psat4g030640 Pisum sativum HOM05D003317 ORTHO05D003696 5.7e-17 91.3 109 47.7
COL.COLO4_21141 Corchorus olitorius HOM05D003317 ORTHO05D003696 7.4e-17 90.9 106 47.2
EL10Ac8g19064 Beta vulgaris HOM05D003317 ORTHO05D003696 9.7e-17 90.5 105 47.6
Duzib168G1355 Durio zibethinus HOM05D003317 ORTHO05D003696 9.7e-17 90.5 106 47.2
Manes.03G053200 Manihot esculenta HOM05D003317 ORTHO05D003696 9.7e-17 90.5 102 46.1
Nn6g35618 Nelumbo nucifera HOM05D003317 ORTHO05D003696 9.7e-17 90.5 106 48.1
Nitab4.5_0002966g0040 Nicotiana tabacum HOM05D003317 ORTHO05D003696 9.7e-17 90.5 107 44.9
Potri.006G220600 Populus trichocarpa HOM05D003317 ORTHO05D003696 9.7e-17 90.5 106 43.4
Sed0002159 Sechium edule HOM05D003317 ORTHO05D003696 9.7e-17 90.5 108 46.3
Gohir.D06G075100 Gossypium hirsutum HOM05D003317 ORTHO05D003696 1.3e-16 90.1 107 47.7
Nitab4.5_0000343g0140 Nicotiana tabacum HOM05D003317 ORTHO05D003696 1.7e-16 89.7 107 43.9
Thecc.09G063600 Theobroma cacao HOM05D003317 ORTHO05D003696 2.2e-16 89.4 106 48.1
Gohir.D07G019300 Gossypium hirsutum HOM05D003317 ORTHO05D003696 2.8e-16 89.0 110 43.6
Gorai.001G020000 Gossypium raimondii HOM05D003317 ORTHO05D003696 2.8e-16 89.0 110 43.6
Cpa.g.sc126.22 Carica papaya HOM05D003317 ORTHO05D003696 3.7e-16 88.6 106 45.3
Gohir.A07G019500 Gossypium hirsutum HOM05D003317 ORTHO05D003696 3.7e-16 88.6 110 43.6
Gorai.010G087700 Gossypium raimondii HOM05D003317 ORTHO05D003696 3.7e-16 88.6 106 48.1
Migut.A00075 Erythranthe guttata HOM05D003317 ORTHO05D003696 6.3e-16 87.8 114 41.2
BcaC06g35953 Brassica carinata HOM05D003317 ORTHO05D003696 1.1e-15 87.0 116 43.1
C07p09320 Brassica napus HOM05D003317 ORTHO05D003696 1.1e-15 87.0 116 43.1
CANSAT56G0327 Cannabis sativa HOM05D003317 ORTHO05D003696 1.1e-15 87.0 108 43.5
Migut.L01559 Erythranthe guttata HOM05D003317 ORTHO05D003696 1.1e-15 87.0 107 44.9
Lj7A686T70 Lonicera japonica HOM05D003317 ORTHO05D003696 1.4e-15 86.7 120 42.5
Sopen00g008950 Solanum pennellii HOM05D003317 ORTHO05D003696 3.1e-15 85.5 97 45.4
SGA_v2.0_scaffold21G09482 Striga asiatica HOM05D003317 ORTHO05D003696 3.1e-15 85.5 107 45.8
DCAR_028330 Daucus carota HOM05D003317 ORTHO05D003696 4.1e-15 85.1 110 43.6
Oeu063419.1 Olea europaea HOM05D003317 ORTHO05D003696 4.1e-15 85.1 114 43.0
MSTRG.25987 Avicennia marina HOM05D003317 ORTHO05D003696 5.3e-15 84.7 108 44.4
Sed0023098 Sechium edule HOM05D003317 ORTHO05D003696 5.3e-15 84.7 107 44.9
TWI32G0197 Tripterygium wilfordii HOM05D003317 ORTHO05D003696 9.1e-15 84.0 112 42.9
Lj7A221G28 Lonicera japonica HOM05D003317 ORTHO05D003696 1.2e-14 83.6 106 48.1
GSVIVG01015088001 Vitis vinifera HOM05D003317 ORTHO05D003696 1.5e-14 83.2 107 45.8
Oeu018029.1 Olea europaea HOM05D003317 ORTHO05D003696 2.6e-14 82.4 108 44.4
ClCG03G015120 Citrullus lanatus HOM05D003317 ORTHO05D003696 3.4e-14 82.0 146 36.3
DCAR_004378 Daucus carota HOM05D003317 ORTHO05D003696 1.0e-13 80.5 112 42.0
BolC7t41350H Brassica oleracea HOM05D003317 ORTHO05D003696 1.7e-13 79.7 124 40.3
THA.LOC104799577 Tarenaya hassleriana HOM05D003317 ORTHO05D003696 2.9e-13 79.0 107 41.1
Zm00001eb040360 Zea mays HOM05D003317 ORTHO05D003696 3.8e-13 78.6 111 41.4
Psat4g155280 Pisum sativum HOM05D003317 ORTHO05D003696 5.0e-13 78.2 48 79.2
SGA_v2.0_scaffold20G09159 Striga asiatica HOM05D003317 ORTHO05D003696 6.5e-13 77.8 106 39.6
Psat4g017720 Pisum sativum HOM05D003317 ORTHO05D003696 8.5e-13 77.4 113 44.2
Cc08_g01130 Coffea canephora HOM05D003317 ORTHO05D003696 1.1e-12 77.0 102 45.1
Thhalv10002406m.g Eutrema salsugineum HOM05D003317 ORTHO05D003696 1.1e-12 77.0 102 40.2
A07p06270 Brassica napus HOM05D003317 ORTHO05D003696 1.9e-12 76.3 119 40.3
BraA07t28422Z Brassica rapa HOM05D003317 ORTHO05D003696 1.9e-12 76.3 119 40.3
SalBow4G1263 Salvia bowleyana HOM05D003317 ORTHO05D003696 2.5e-12 75.9 108 43.5
Sp6g23290 Schrenkiella parvula HOM05D003317 ORTHO05D003696 7.2e-12 74.3 109 36.7
Os08g0459100 Oryza sativa ssp. japonica HOM05D003317 ORTHO05D003696 9.4e-12 73.9 116 39.7
PSO135G1032 Papaver somniferum HOM05D003317 ORTHO05D003696 1.2e-11 73.6 107 40.2
CDE05G2394 Ceratophyllum demersum HOM05D001216 ORTHO05D003822 2.1e-11 72.8 85 47.1
Zm00001eb177300 Zea mays HOM05D003317 ORTHO05D003696 2.1e-11 72.8 111 40.5
Aqoxy7G03984 Aquilegia oxysepala HOM05D003317 ORTHO05D003696 3.6e-11 72.0 133 36.1
BraA03t10357Z Brassica rapa HOM05D003317 ORTHO05D003696 3.6e-11 72.0 113 34.5
Ca_23417_v3 Cicer arietinum L. HOM05D003317 ORTHO05D003696 6.1e-11 71.2 106 42.5
Nitab4.5_0008422g0030 Nicotiana tabacum HOM05D003317 ORTHO05D003696 6.1e-11 71.2 106 39.6
A03p10450 Brassica napus HOM05D003317 ORTHO05D003696 1.0e-10 70.5 113 34.5
Sabra06G0170300 Salix brachista HOM05D003317 ORTHO05D003696 1.0e-10 70.5 140 32.1
Ciclev10010155m.g Citrus clementina HOM05D003317 ORTHO05D003696 3.0e-10 68.9 112 37.5
PSO210G7636 Papaver somniferum HOM05D003317 ORTHO05D003696 5.1e-10 68.2 107 39.3
Solyc08g061650.4 Solanum lycopersicum HOM05D003317 ORTHO05D003696 6.7e-10 67.8 106 40.6
DCAR_001231 Daucus carota HOM05D003317 ORTHO05D003696 1.5e-09 66.6 111 40.5
vmacro06337 Vaccinium macrocarpon HOM05D003317 ORTHO05D003696 2.0e-09 66.2 78 42.3
CSS0017754 Camellia sinensis var. sinensis HOM05D003317 ORTHO05D003696 3.3e-09 65.5 102 39.2
Phvul.007G245833 Phaseolus vulgaris HOM05D003317 ORTHO05D003696 4.4e-09 65.1 55 60.0
CARHR191640 Cardamine hirsuta HOM05D003317 ORTHO05D003696 9.7e-09 63.9 100 38.0
TPR.G55 Trifolium pratense HOM05D003317 ORTHO05D003696 9.7e-09 63.9 76 46.1
MD02G1090200 Malus domestica HOM05D003317 ORTHO05D003696 1.7e-08 63.2 71 46.5
Nitab4.5_0000446g0150 Nicotiana tabacum HOM05D003317 ORTHO05D003696 4.8e-08 61.6 112 35.7
ATR0598G291 Amborella trichopoda HOM05D003317 ORTHO05D003696 6.3e-08 61.2 106 36.8
AL6G32870 Arabidopsis lyrata HOM05D003317 ORTHO05D003696 2.4e-07 59.3 103 38.8
Rhsim01G0183000 Rhododendron simsii HOM05D003317 ORTHO05D003696 2.4e-07 59.3 111 39.6
Rhsim03G0227900 Rhododendron simsii HOM05D003317 ORTHO05D003696 5.3e-07 58.2 40 60.0
BcaB01g04757 Brassica carinata HOM05D003317 ORTHO05D003696 7.0e-07 57.8 87 37.9
Cpa.g.sc28.54 Carica papaya HOM05D003317 ORTHO05D003696 1.5e-06 56.6 40 62.5
AagrBONN_evm.TU.Sc2ySwM_368.362 Anthoceros agrestis HOM05D003317 ORTHO05D003696 2.0e-06 56.2 108 30.6


User provided reference genes

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