Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G193100 Phaseolus vulgaris HOM05D004104 ORTHO05D004755 4.2e-81 304.7 158 100.0
VMungo0720G2373 Vigna mungo HOM05D004104 ORTHO05D004755 9.3e-81 303.5 158 99.4
Glyma.10G036900 Glycine max HOM05D004104 ORTHO05D004755 8.7e-79 297.0 158 96.8
Ca_09682_v3 Cicer arietinum L. HOM05D004104 ORTHO05D004755 9.7e-78 293.5 158 95.6
Lalb_Chr21g0313851 Lupinus albus HOM05D004104 ORTHO05D004755 8.2e-77 290.4 158 94.3
TPR.G24709 Trifolium pratense HOM05D004104 ORTHO05D004755 5.3e-76 287.7 156 94.9
Medtr1g069925 Medicago truncatula HOM05D004104 ORTHO05D004755 9.0e-76 287.0 158 93.7
arahy.Tifrunner.gnm1.ann1.QEJR01 Arachis hypogaea HOM05D004104 ORTHO05D004755 3.4e-75 285.0 158 92.4
Psat6g055120 Pisum sativum HOM05D004104 ORTHO05D004755 3.4e-75 285.0 158 92.4
TPR.G6322 Trifolium pratense HOM05D004104 ORTHO05D004755 5.9e-75 284.3 156 94.2
Lj5g0006581 Lotus japonicus HOM05D004104 ORTHO05D004755 8.5e-74 280.4 156 92.9
Ca_09886_v3 Cicer arietinum L. HOM05D004104 ORTHO05D004755 3.2e-73 278.5 155 94.2
arahy.Tifrunner.gnm1.ann1.0Z487T Arachis hypogaea HOM05D000348 ORTHO05D000244 3.9e-71 271.6 153 90.8
CiPaw.03G263800 Carya illinoinensis HOM05D004104 ORTHO05D004755 8.8e-71 270.4 158 88.0
arahy.Tifrunner.gnm1.ann1.6K1PAL Arachis hypogaea HOM05D000348 ORTHO05D000244 2.0e-70 269.2 153 90.2
Glyma.13G123300 Glycine max HOM05D004104 ORTHO05D004755 2.5e-70 268.9 144 95.8
QL09p038638 Quercus lobata HOM05D004104 ORTHO05D004755 9.7e-70 266.9 157 86.6
Potri.002G038700 Populus trichocarpa HOM05D004104 ORTHO05D004755 3.1e-68 261.9 158 84.2
CsaV3_7G027350 Cucumis sativus L. HOM05D004104 ORTHO05D004755 9.1e-68 260.4 158 86.1
ClCG09G007780 Citrullus lanatus HOM05D000113 ORTHO05D004634 1.2e-67 260.0 158 85.4
CANSAT01G3088 Cannabis sativa HOM05D004104 ORTHO05D004755 5.9e-67 257.7 158 84.8
Cpa.g.sc50.23 Carica papaya HOM05D004104 ORTHO05D004755 5.9e-67 257.7 158 84.2
Sed0024271 Sechium edule HOM05D004104 ORTHO05D004755 5.9e-67 257.7 158 84.2
Manes.12G032000 Manihot esculenta HOM05D004104 ORTHO05D004755 1.0e-66 256.9 158 84.2
PGR044G0499 Punica granatum HOM05D004104 ORTHO05D004755 1.7e-66 256.1 156 87.2
Atru.chr5.1672 Acer truncatum HOM05D004104 ORTHO05D004755 3.8e-66 255.0 158 83.5
Potri.005G223900 Populus trichocarpa HOM05D004104 ORTHO05D004755 3.8e-66 255.0 158 82.3
TWI12G1345 Tripterygium wilfordii HOM05D004104 ORTHO05D004755 3.8e-66 255.0 158 82.3
Haze_24627 Corylus avellana HOM05D005758 ORTHO05D007218 8.5e-66 253.8 147 88.4
Prupe.8G224100 Prunus persica HOM05D004104 ORTHO05D004755 1.2e-64 250.0 158 83.5
Thecc.01G258800 Theobroma cacao HOM05D004104 ORTHO05D004755 7.9e-64 247.3 159 81.1
Eucgr.K03263 Eucalyptus grandis HOM05D004104 ORTHO05D004755 1.8e-63 246.1 156 84.0
Duzib211G0552 Durio zibethinus HOM05D004104 ORTHO05D004755 3.0e-63 245.4 159 81.8
GSVIVG01028325001 Vitis vinifera HOM05D004104 ORTHO05D004755 5.7e-62 241.1 155 78.7
Sabra02G0031000 Salix brachista HOM05D004104 ORTHO05D004755 7.4e-62 240.7 157 78.3
Ciclev10023660m.g Citrus clementina HOM05D004104 ORTHO05D004755 4.8e-61 238.0 173 75.7
RcHm_v2.0_Chr6g0288171 Rosa chinensis HOM05D004104 ORTHO05D004755 6.3e-61 237.7 155 81.3
FAN15G0777 Fragaria x ananassa HOM05D005758 ORTHO05D007218 8.2e-61 237.3 157 78.3
Gohir.A08G190000 Gossypium hirsutum HOM05D004104 ORTHO05D004755 8.2e-61 237.3 159 79.2
FAN27G1683 Fragaria x ananassa HOM05D005758 ORTHO05D007218 1.1e-60 236.9 157 78.3
Gohir.D08G208500 Gossypium hirsutum HOM05D004104 ORTHO05D004755 1.1e-60 236.9 159 79.2
Gorai.004G220900 Gossypium raimondii HOM05D004104 ORTHO05D004755 1.1e-60 236.9 159 79.2
MD10G1184400 Malus domestica HOM05D004104 ORTHO05D004755 3.1e-60 235.3 157 81.5
FAN20G0124 Fragaria x ananassa HOM05D004104 ORTHO05D004755 4.1e-60 235.0 155 78.7
CiPaw.01G185000 Carya illinoinensis HOM05D004104 ORTHO05D004755 2.0e-59 232.6 157 76.4
MD05G1197800 Malus domestica HOM05D004104 ORTHO05D004755 7.7e-59 230.7 151 82.1
Haze_11377 Corylus avellana HOM05D004104 ORTHO05D004755 1.0e-58 230.3 157 75.8
Cc06_g07960 Coffea canephora HOM05D004104 ORTHO05D004755 6.5e-58 227.6 155 79.4
Sabra05G0172700 Salix brachista HOM05D004104 ORTHO05D004755 1.2e-56 223.4 223 57.4
Dinv27050 Davidia involucrata HOM05D004104 ORTHO05D004755 1.6e-56 223.0 157 73.9
arahy.Tifrunner.gnm1.ann1.2HR6HW Arachis hypogaea HOM05D004104 ORTHO05D004755 2.1e-56 222.6 185 68.6
Rhsim01G0264300 Rhododendron simsii HOM05D004104 ORTHO05D004755 3.6e-56 221.9 155 76.1
COL.COLO4_15874 Corchorus olitorius HOM05D004104 ORTHO05D004755 8.0e-56 220.7 157 75.2
Actinidia25786 Actinidia chinensis HOM05D004104 ORTHO05D004755 1.4e-55 219.9 159 75.5
Duzib052G0511 Durio zibethinus HOM05D004104 ORTHO05D004755 2.3e-55 219.2 157 73.9
Thecc.04G255000 Theobroma cacao HOM05D004104 ORTHO05D004755 4.0e-55 218.4 155 74.8
EL10Ac5g10403 Beta vulgaris HOM05D004104 ORTHO05D004755 8.8e-55 217.2 155 72.3
Solyc09g072580.3 Solanum lycopersicum HOM05D004104 ORTHO05D004755 8.8e-55 217.2 155 74.8
Sopen09g028390 Solanum pennellii HOM05D004104 ORTHO05D004755 8.8e-55 217.2 155 74.8
PGSC0003DMG400010299 Solanum tuberosum HOM05D004104 ORTHO05D004755 8.8e-55 217.2 155 74.8
FvH4_2g21510 Fragaria vesca HOM05D005758 ORTHO05D007218 2.0e-54 216.1 201 61.2
Nitab4.5_0000470g0160 Nicotiana tabacum HOM05D004104 ORTHO05D004755 2.0e-54 216.1 155 74.2
Atru.chr4.2063 Acer truncatum HOM05D004104 ORTHO05D004755 2.6e-54 215.7 159 71.1
Nitab4.5_0009483g0030 Nicotiana tabacum HOM05D004104 ORTHO05D004755 2.6e-54 215.7 155 74.2
COL.COLO4_05896 Corchorus olitorius HOM05D005758 ORTHO05D007218 3.3e-54 215.3 129 86.0
GSVIVG01027809001 Vitis vinifera HOM05D004104 ORTHO05D004755 5.7e-54 214.5 155 72.9
AUR62011875 Chenopodium quinoa HOM05D004104 ORTHO05D004755 9.7e-54 213.8 155 71.0
Aqoxy2G03638 Aquilegia oxysepala HOM05D004104 ORTHO05D004755 8.2e-53 210.7 157 73.9
QL06p017873 Quercus lobata HOM05D004104 ORTHO05D004755 1.1e-52 210.3 157 72.0
Gohir.D02G045400 Gossypium hirsutum HOM05D004104 ORTHO05D004755 1.4e-52 209.9 157 70.7
Gorai.005G050100 Gossypium raimondii HOM05D004104 ORTHO05D004755 1.4e-52 209.9 157 70.7
SalBow4G1878 Salvia bowleyana HOM05D004104 ORTHO05D004755 5.3e-52 208.0 155 74.2
Lsat_1_v5_gn_3_120420 Lactuca sativa HOM05D004104 ORTHO05D004755 7.0e-52 207.6 155 70.3
HanXRQChr03g0091411 Helianthus annuus HOM05D004104 ORTHO05D004755 9.1e-52 207.2 155 69.7
Gohir.A02G039300 Gossypium hirsutum HOM05D004104 ORTHO05D004755 1.2e-51 206.8 157 70.1
Duzib151G0362 Durio zibethinus HOM05D004104 ORTHO05D004755 2.7e-51 205.7 155 71.0
CSS0037223 Camellia sinensis var. sinensis HOM05D004104 ORTHO05D004755 4.5e-51 204.9 158 69.6
ECA240G4332 Erigeron canadensis HOM05D004104 ORTHO05D004755 5.9e-51 204.5 155 69.0
SGA_v2.0_scaffold1G00613 Striga asiatica HOM05D004104 ORTHO05D004755 5.9e-51 204.5 155 74.2
Migut.D00423 Erythranthe guttata HOM05D004104 ORTHO05D004755 1.3e-50 203.4 155 73.5
PSO357G0016 Papaver somniferum HOM05D004104 ORTHO05D004755 2.9e-50 202.2 159 71.1
Hund02913 Selenicereus undatus HOM05D004104 ORTHO05D004755 2.9e-50 202.2 160 67.5
MSTRG.21496 Avicennia marina HOM05D004104 ORTHO05D004755 6.5e-50 201.1 155 72.3
PSO170G1063 Papaver somniferum HOM05D004104 ORTHO05D004755 1.1e-49 200.3 159 70.4
SGA_v2.0_scaffold138G35232 Striga asiatica HOM05D000374 ORTHO05D000238 1.1e-49 200.3 155 72.9
MSTRG.18320 Avicennia marina HOM05D004104 ORTHO05D004755 7.2e-49 197.6 155 71.6
SEGI_09266 Sequoiadendron giganteum HOM05D004104 ORTHO05D004755 7.2e-49 197.6 153 68.6
Cc03_g05510 Coffea canephora HOM05D004104 ORTHO05D004755 9.4e-49 197.2 157 65.6
TAR636G3439 Trochodendron aralioides HOM05D004104 ORTHO05D004755 9.4e-49 197.2 153 69.9
AT4G14385 Arabidopsis thaliana HOM05D004104 ORTHO05D004755 1.2e-48 196.8 158 67.7
Aa31LG9G2930 Aethionema arabicum HOM05D004104 ORTHO05D004755 2.7e-48 195.7 158 67.1
AL7G41830 Arabidopsis lyrata HOM05D004104 ORTHO05D004755 4.7e-48 194.9 157 67.5
CDE04G2476 Ceratophyllum demersum HOM05D004104 ORTHO05D004755 4.7e-48 194.9 157 66.9
Ciclev10006103m.g Citrus clementina HOM05D004104 ORTHO05D004755 6.1e-48 194.5 152 67.1
Nitab4.5_0001005g0090 Nicotiana tabacum HOM05D004104 ORTHO05D004755 6.1e-48 194.5 154 68.2
Aqoxy2G03648 Aquilegia oxysepala HOM05D004104 ORTHO05D004755 1.4e-47 193.4 153 71.2
HanXRQChr04g0112651 Helianthus annuus HOM05D004104 ORTHO05D004755 4.0e-47 191.8 155 67.1
Gohir.A07G212800 Gossypium hirsutum HOM05D004104 ORTHO05D004755 5.2e-47 191.4 159 68.6
Nitab4.5_0000044g0340 Nicotiana tabacum HOM05D004104 ORTHO05D004755 5.2e-47 191.4 154 67.5
TAR365G1233 Trochodendron aralioides HOM05D004104 ORTHO05D004755 8.8e-47 190.7 152 68.4
Actinidia01846 Actinidia chinensis HOM05D004104 ORTHO05D004755 1.5e-46 189.9 154 66.2
MELO3C015732.2 Cucumis melo HOM05D004104 ORTHO05D004755 1.5e-46 189.9 270 47.4
Sopen09g033030 Solanum pennellii HOM05D004104 ORTHO05D004755 2.0e-46 189.5 154 66.9
THA.LOC104822244 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 2.0e-46 189.5 157 65.0
unitig_0.g154 Utricularia gibba HOM05D003973 ORTHO05D004679 4.4e-46 188.3 155 69.7
Solyc09g090120.3 Solanum lycopersicum HOM05D004104 ORTHO05D004755 9.8e-46 187.2 154 66.2
Rhsim02G0037300 Rhododendron simsii HOM05D004104 ORTHO05D004755 1.3e-45 186.8 157 61.1
Gorai.001G253400 Gossypium raimondii HOM05D004104 ORTHO05D004755 6.3e-45 184.5 167 65.3
TWI18G1001 Tripterygium wilfordii HOM05D004104 ORTHO05D004755 1.1e-44 183.7 159 64.8
Nn3g19649 Nelumbo nucifera HOM05D004104 ORTHO05D004755 1.4e-44 183.3 123 78.9
A04p07650 Brassica napus HOM05D004104 ORTHO05D004755 3.1e-44 182.2 185 58.4
SalBow3G2247 Salvia bowleyana HOM05D004104 ORTHO05D004755 3.1e-44 182.2 155 61.9
Migut.G00520 Erythranthe guttata HOM05D004104 ORTHO05D004755 7.0e-44 181.0 155 63.2
Os01g0233400 Oryza sativa ssp. japonica HOM05D004104 ORTHO05D004755 2.7e-43 179.1 143 69.2
Os12g0298600 Oryza sativa ssp. japonica HOM05D004104 ORTHO05D004755 2.7e-43 179.1 143 69.2
Lsat_1_v5_gn_8_92980 Lactuca sativa HOM05D004104 ORTHO05D004755 3.5e-43 178.7 156 66.0
Manes.03G164300 Manihot esculenta HOM05D004104 ORTHO05D004755 2.9e-42 175.6 140 67.9
vmacro15441 Vaccinium macrocarpon HOM05D004104 ORTHO05D004755 6.5e-42 174.5 151 62.3
THA.LOC104825277 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 3.2e-41 172.2 172 58.1
Peaxi162Scf00855g00233 Petunia axillaris HOM05D004104 ORTHO05D004755 2.7e-40 169.1 177 57.1
Hund11888 Selenicereus undatus HOM05D004104 ORTHO05D004755 2.7e-40 169.1 130 71.5
Lj1A66T60 Lonicera japonica HOM05D004104 ORTHO05D004755 6.1e-40 167.9 157 60.5
Manes.13G033700 Manihot esculenta HOM05D004104 ORTHO05D004755 6.1e-40 167.9 97 86.6
ECA236G2125 Erigeron canadensis HOM05D004104 ORTHO05D004755 2.3e-39 166.0 159 61.6
CARHR220610 Cardamine hirsuta HOM05D004104 ORTHO05D004755 3.0e-39 165.6 155 58.1
Thhalv10026437m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 6.8e-39 164.5 155 57.4
MSTRG.9892 Avicennia marina HOM05D004104 ORTHO05D004755 8.8e-39 164.1 141 63.8
BolC4t25712H Brassica oleracea HOM05D004104 ORTHO05D004755 8.8e-39 164.1 114 72.8
THA.LOC104825278 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 8.8e-39 164.1 93 86.0
BcaC02g09319 Brassica carinata HOM05D004104 ORTHO05D004755 1.2e-38 163.7 155 60.0
C04p41340 Brassica napus HOM05D004104 ORTHO05D004755 1.2e-38 163.7 155 60.0
BraA04t16456Z Brassica rapa HOM05D004104 ORTHO05D004755 1.2e-38 163.7 155 60.0
Carub.0007s2785 Capsella rubella HOM05D004104 ORTHO05D004755 1.5e-38 163.3 155 57.4
HPP92_004791 Vanilla planifolia HOM05D004104 ORTHO05D004755 1.5e-38 163.3 124 71.0
BcaB02g08611 Brassica carinata HOM05D004104 ORTHO05D004755 2.0e-38 162.9 156 59.6
Sp7g12470 Schrenkiella parvula HOM05D004104 ORTHO05D004755 3.4e-38 162.2 155 58.1
Sc24g0003130 Simmondsia chinensis HOM05D004104 ORTHO05D004755 1.7e-37 159.8 93 83.9
Mapoly0055s0054 Marchantia polymorpha HOM05D004104 ORTHO05D004755 3.7e-37 158.7 156 60.9
Gohir.D07G218900 Gossypium hirsutum HOM05D004104 ORTHO05D004755 4.9e-37 158.3 95 86.3
Pp3c8_15220 Physcomitrium patens HOM05D004104 ORTHO05D004755 4.9e-37 158.3 153 58.8
unitig_21.g20174 Utricularia gibba HOM05D004104 ORTHO05D004755 6.3e-37 157.9 149 57.7
Ah.11g049720 Amaranthus hybridus HOM05D004104 ORTHO05D004755 1.1e-36 157.1 116 69.0
MBI10_g37181_MAGBIO Magnolia biondii HOM05D004104 ORTHO05D004755 4.5e-35 151.8 122 67.2
HPP92_008311 Vanilla planifolia HOM05D004104 ORTHO05D004755 1.0e-34 150.6 156 54.5
CBR_g31961 Chara braunii HOM05D004104 ORTHO05D004755 1.3e-34 150.2 152 57.9
SEGI_16929 Sequoiadendron giganteum HOM05D004104 ORTHO05D004755 2.3e-34 149.4 98 76.5
Pp3c24_15450 Physcomitrium patens HOM05D004104 ORTHO05D004755 8.6e-34 147.5 153 57.5
Dinv34620 Davidia involucrata HOM05D004104 ORTHO05D004755 1.1e-33 147.1 161 56.5
Ah.13g072460 Amaranthus hybridus HOM05D004104 ORTHO05D004755 2.5e-33 146.0 119 67.2
AUR62002135 Chenopodium quinoa HOM05D004104 ORTHO05D004755 3.3e-33 145.6 178 51.1
Duzib138G1233 Durio zibethinus HOM05D004104 ORTHO05D004755 5.6e-33 144.8 158 57.0
Dinv29861 Davidia involucrata HOM05D004104 ORTHO05D004755 4.7e-32 141.7 96 74.0
Actinidia32304 Actinidia chinensis HOM05D004104 ORTHO05D004755 6.1e-32 141.4 125 60.0
Oeu011497.1 Olea europaea HOM05D004104 ORTHO05D004755 6.8e-31 137.9 102 67.6
AagrBONN_evm.TU.Sc2ySwM_228.2514 Anthoceros agrestis HOM05D004104 ORTHO05D004755 2.6e-30 136.0 143 55.2
AagrBONN_evm.TU.Sc2ySwM_368.1944 Anthoceros agrestis HOM05D004104 ORTHO05D004755 3.4e-30 135.6 143 56.6
SGA_v2.0_scaffold67G22747 Striga asiatica HOM05D004104 ORTHO05D004755 3.4e-30 135.6 155 51.0
EL10Ac3g05008 Beta vulgaris HOM05D004104 ORTHO05D004755 1.1e-28 130.6 93 72.0
AUR62015575 Chenopodium quinoa HOM05D004104 ORTHO05D004755 9.2e-28 127.5 94 69.1
Peaxi162Scf00543g00310 Petunia axillaris HOM05D004104 ORTHO05D004755 9.2e-28 127.5 148 54.7
PGSC0003DMG400017224 Solanum tuberosum HOM05D004104 ORTHO05D004755 5.9e-27 124.8 167 47.9
Ah.04g155820 Amaranthus hybridus HOM05D004104 ORTHO05D004755 8.6e-26 120.9 92 66.3
CAN.G2012.3 Capsicum annuum HOM05D004104 ORTHO05D004755 1.7e-21 106.7 87 69.0
CAN.G896.9 Capsicum annuum HOM05D004104 ORTHO05D004755 2.2e-21 106.3 85 71.8
Thhalv10002280m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 9.2e-20 100.9 91 65.9
MCO10G151 Micromonas commoda HOM05D004104 ORTHO05D004755 7.8e-19 97.8 75 62.7
PRCOL_00002727 Prasinoderma coloniale HOM05D004104 ORTHO05D004755 6.6e-18 94.7 83 54.2
Thhalv10029502m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 1.9e-17 93.2 91 59.3
Zm00001eb188390 Zea mays HOM05D004104 ORTHO05D004755 6.2e-16 88.2 61 70.5
THA.LOC104825261 Tarenaya hassleriana HOM05D013951 ORTHO05D021024 6.8e-15 84.7 88 55.7
arahy.Tifrunner.gnm1.ann1.A8QM82 Arachis hypogaea HOM05D004104 ORTHO05D004755 6.4e-13 78.2 46 78.3
Gohir.D03G080833 Gossypium hirsutum HOM05D004104 ORTHO05D004755 9.2e-12 74.3 62 58.1
Gorai.003G083000 Gossypium raimondii HOM05D004104 ORTHO05D004755 3.5e-11 72.4 62 58.1
Actinidia11346 Actinidia chinensis HOM05D004104 ORTHO05D004755 6.0e-11 71.6 66 51.5
Cc01_g11500 Coffea canephora HOM05D004104 ORTHO05D004755 5.1e-10 68.6 62 64.5
Cre06.g291200 Chlamydomonas reinhardtii HOM05D004104 ORTHO05D004755 4.3e-09 65.5 86 43.0
SHI09794 Sapria himalayana HOM05D004104 ORTHO05D004755 9.5e-09 64.3 41 75.6
Aqoxy2G03647 Aquilegia oxysepala HOM05D004104 ORTHO05D004755 2.8e-08 62.8 95 45.3
Cre07.g328450 Chlamydomonas reinhardtii HOM05D004104 ORTHO05D004755 1.4e-07 60.5 84 42.9
QL09p049090 Quercus lobata HOM05D005758 ORTHO05D007218 2.3e-07 59.7 36 83.3
DCAR_012546 Daucus carota HOM05D004104 ORTHO05D004755 3.1e-07 59.3 92 45.7
ATR0347G001 Amborella trichopoda HOM05D004104 ORTHO05D004755 5.8e-06 55.1 63 54.0


User provided reference genes

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