Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G180200 Phaseolus vulgaris HOM05D003921 ORTHO05D004394 1.5e-129 466.5 289 100.0
Phvul.007G264700 Phaseolus vulgaris HOM05D003921 ORTHO05D004394 4.6e-126 454.9 289 97.9
Glyma.20G233800 Glycine max HOM05D003921 ORTHO05D004394 3.0e-109 399.1 288 84.7
VMungo0720G1998 Vigna mungo HOM05D003921 ORTHO05D004394 3.7e-107 392.1 290 87.9
Ca_20760_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 6.2e-99 364.8 291 83.5
TPR.G19495 Trifolium pratense HOM05D002828 ORTHO05D003457 6.9e-98 361.3 289 80.6
TPR.G27266 Trifolium pratense HOM05D003921 ORTHO05D004394 1.5e-97 360.1 290 79.0
Ca_31306_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 2.0e-97 359.8 289 83.0
Glyma.10G154500 Glycine max HOM05D003921 ORTHO05D004394 6.5e-96 354.8 288 72.9
Lj3g0006890 Lotus japonicus HOM05D003921 ORTHO05D004394 1.9e-92 343.2 287 71.1
arahy.Tifrunner.gnm1.ann1.HSUB65 Arachis hypogaea HOM05D003921 ORTHO05D004394 4.8e-91 338.6 274 72.6
Lalb_Chr10g0096111 Lupinus albus HOM05D003921 ORTHO05D004394 5.9e-89 331.6 287 65.9
Haze_17961 Corylus avellana HOM05D003921 ORTHO05D004394 1.0e-88 330.9 286 64.0
Cfa018157 Carpinus fangiana HOM05D003921 ORTHO05D004394 3.8e-88 328.9 286 63.6
TAR626G1747 Trochodendron aralioides HOM05D003921 ORTHO05D004394 3.8e-88 328.9 296 74.3
Medtr5g028350 Medicago truncatula HOM05D003921 ORTHO05D004394 1.2e-86 323.9 289 76.8
CiPaw.15G078700 Carya illinoinensis HOM05D003921 ORTHO05D004394 2.1e-86 323.2 289 75.8
Psat2g139240 Pisum sativum HOM05D003921 ORTHO05D004394 3.0e-85 319.3 289 76.1
Cpa.g.sc3.273 Carica papaya HOM05D003921 ORTHO05D004394 5.1e-85 318.5 287 61.0
QL02p008779 Quercus lobata HOM05D003921 ORTHO05D004394 4.1e-82 308.9 279 67.4
MD01G1185600 Malus domestica HOM05D003921 ORTHO05D004394 5.3e-82 308.5 284 75.7
Hma1.2p1_0654F.1_g196410 Hydrangea macrophylla HOM05D003921 ORTHO05D004394 1.5e-81 307.0 289 59.9
Prupe.2G282000 Prunus persica HOM05D003921 ORTHO05D004394 1.5e-81 307.0 286 73.8
COL.COLO4_14179 Corchorus olitorius HOM05D003921 ORTHO05D004394 2.0e-81 306.6 284 68.7
MBI05_g15474_MAGBIO Magnolia biondii HOM05D003921 ORTHO05D004394 3.4e-81 305.8 280 62.5
Lalb_Chr06g0167921 Lupinus albus HOM05D003921 ORTHO05D004394 5.9e-81 305.1 287 61.7
Ca_25165_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 1.3e-80 303.9 287 76.0
Gohir.A07G039500 Gossypium hirsutum HOM05D003921 ORTHO05D004394 3.8e-80 302.4 284 61.3
Thecc.03G161300 Theobroma cacao HOM05D003921 ORTHO05D004394 8.5e-80 301.2 287 60.6
CSS0011813 Camellia sinensis var. sinensis HOM05D003921 ORTHO05D004394 1.4e-79 300.4 295 70.8
Medtr8g075400 Medicago truncatula HOM05D003921 ORTHO05D004394 2.5e-79 299.7 289 74.4
Gohir.D07G043600 Gossypium hirsutum HOM05D003921 ORTHO05D004394 3.2e-79 299.3 288 60.8
Dinv22928 Davidia involucrata HOM05D003921 ORTHO05D004394 4.2e-79 298.9 290 60.0
MD07G1257700 Malus domestica HOM05D003921 ORTHO05D004394 4.2e-79 298.9 284 75.4
Gorai.001G046600 Gossypium raimondii HOM05D003921 ORTHO05D004394 7.2e-79 298.1 288 60.8
Sed0011284 Sechium edule HOM05D003921 ORTHO05D004394 1.2e-78 297.4 292 67.8
Potri.015G131200 Populus trichocarpa HOM05D003921 ORTHO05D004394 2.1e-78 296.6 290 58.3
ClCG01G005120 Citrullus lanatus HOM05D003921 ORTHO05D004394 1.0e-77 294.3 258 69.8
TWI23G0331 Tripterygium wilfordii HOM05D003921 ORTHO05D004394 5.1e-77 292.0 306 62.7
TWI14G0513 Tripterygium wilfordii HOM05D003921 ORTHO05D004394 6.7e-77 291.6 305 63.0
PGR042G0045 Punica granatum HOM05D003921 ORTHO05D004394 8.8e-77 291.2 283 66.4
Manes.06G137800 Manihot esculenta HOM05D003921 ORTHO05D004394 1.3e-75 287.3 283 59.7
Cc02_g03920 Coffea canephora HOM05D003921 ORTHO05D004394 1.7e-75 287.0 291 66.7
FvH4_7g28160 Fragaria vesca HOM05D003921 ORTHO05D004394 1.7e-75 287.0 259 70.7
Atru.chr1.637 Acer truncatum HOM05D003921 ORTHO05D004394 2.8e-75 286.2 285 65.6
FAN06G4038 Fragaria x ananassa HOM05D003921 ORTHO05D004394 2.8e-75 286.2 259 69.9
Rhsim11G0028600 Rhododendron simsii HOM05D003921 ORTHO05D004394 2.8e-75 286.2 293 58.0
Sed0026547 Sechium edule HOM05D003921 ORTHO05D004394 2.8e-75 286.2 295 64.7
vmacro18851 Vaccinium macrocarpon HOM05D003921 ORTHO05D004394 3.7e-75 285.8 299 56.2
PSO782G4293 Papaver somniferum HOM05D003921 ORTHO05D004394 4.8e-75 285.4 289 67.5
PSO478G1412 Papaver somniferum HOM05D003921 ORTHO05D004394 1.1e-74 284.3 282 68.1
FAN03G1144 Fragaria x ananassa HOM05D003921 ORTHO05D004394 1.4e-74 283.9 248 71.4
RcHm_v2.0_Chr1g0375101 Rosa chinensis HOM05D003921 ORTHO05D004394 2.4e-74 283.1 259 66.4
CSS0049059 Camellia sinensis var. sinensis HOM05D003921 ORTHO05D004394 3.1e-74 282.7 270 58.1
Aqoxy1G01610 Aquilegia oxysepala HOM05D003921 ORTHO05D004394 4.1e-74 282.3 288 64.6
FAN10G0634 Fragaria x ananassa HOM05D003921 ORTHO05D004394 4.1e-74 282.3 242 72.3
Duzib084G0641 Durio zibethinus HOM05D003921 ORTHO05D004394 5.3e-74 282.0 282 59.6
FAN01G0440 Fragaria x ananassa HOM05D003921 ORTHO05D004394 9.1e-74 281.2 242 71.9
FAN06G2146 Fragaria x ananassa HOM05D003921 ORTHO05D004394 9.1e-74 281.2 242 71.9
Lalb_Chr17g0338581 Lupinus albus HOM05D003921 ORTHO05D004394 9.1e-74 281.2 282 58.2
TAR636G2246 Trochodendron aralioides HOM05D003921 ORTHO05D004394 1.2e-73 280.8 291 58.4
Migut.J00413 Erythranthe guttata HOM05D003921 ORTHO05D004394 1.5e-73 280.4 290 57.6
FAN03G3435 Fragaria x ananassa HOM05D003921 ORTHO05D004394 1.5e-73 280.4 242 71.9
SGA_v2.0_scaffold126G33894 Striga asiatica HOM05D003921 ORTHO05D004394 1.7e-72 276.9 286 62.9
MELO3C005417.2 Cucumis melo HOM05D003921 ORTHO05D004394 2.9e-72 276.2 299 58.9
Aa31LG5G22200 Aethionema arabicum HOM05D003921 ORTHO05D004394 5.0e-72 275.4 265 60.0
Aa31LG5G22190 Aethionema arabicum HOM05D003921 ORTHO05D004394 8.5e-72 274.6 291 57.4
A01p32500 Brassica napus HOM05D003921 ORTHO05D004394 1.9e-71 273.5 297 58.9
unitig_744.g24672 Utricularia gibba HOM05D003921 ORTHO05D004394 1.9e-71 273.5 284 64.8
CDE07G0272 Ceratophyllum demersum HOM05D003921 ORTHO05D004394 2.5e-71 273.1 285 57.9
BraA01t03380Z Brassica rapa HOM05D003921 ORTHO05D004394 2.1e-70 270.0 297 58.9
Eucgr.E01709 Eucalyptus grandis HOM05D003921 ORTHO05D004394 2.1e-70 270.0 300 54.7
Ciclev10005521m.g Citrus clementina HOM05D003921 ORTHO05D004394 3.6e-70 269.2 261 59.4
CsaV3_5G005400 Cucumis sativus L. HOM05D003921 ORTHO05D004394 3.6e-70 269.2 300 58.0
A05p26040 Brassica napus HOM05D003921 ORTHO05D004394 8.0e-70 268.1 295 59.0
BraA05t21488Z Brassica rapa HOM05D003921 ORTHO05D004394 1.0e-69 267.7 289 59.5
BcaB04g20506 Brassica carinata HOM05D003921 ORTHO05D004394 1.4e-69 267.3 266 62.4
BcaB06g26378 Brassica carinata HOM05D003921 ORTHO05D004394 5.2e-69 265.4 285 59.6
DCAR_020219 Daucus carota HOM05D003921 ORTHO05D004394 6.7e-69 265.0 301 58.8
BcaC09g49188 Brassica carinata HOM05D003921 ORTHO05D004394 8.8e-69 264.6 292 60.6
C01p41660 Brassica napus HOM05D003921 ORTHO05D004394 8.8e-69 264.6 292 60.6
BolC1t04121H Brassica oleracea HOM05D003921 ORTHO05D004394 8.8e-69 264.6 292 60.6
BraA03t13433Z Brassica rapa HOM05D003921 ORTHO05D004394 1.1e-68 264.2 292 59.9
BcaC05g28029 Brassica carinata HOM05D003921 ORTHO05D004394 2.0e-68 263.5 297 66.3
Rhsim07G0193400 Rhododendron simsii HOM05D003921 ORTHO05D004394 3.3e-68 262.7 282 55.3
ATR0626G386 Amborella trichopoda HOM05D003921 ORTHO05D004394 7.4e-68 261.5 282 58.2
BolC5t32786H Brassica oleracea HOM05D003921 ORTHO05D004394 7.4e-68 261.5 297 66.0
A03p42870 Brassica napus HOM05D003921 ORTHO05D004394 1.3e-67 260.8 292 59.9
AT3G22660 Arabidopsis thaliana HOM05D003921 ORTHO05D004394 1.7e-67 260.4 264 57.2
BcaC01g03432 Brassica carinata HOM05D003921 ORTHO05D004394 2.8e-67 259.6 269 62.1
BolC3t17533H Brassica oleracea HOM05D003921 ORTHO05D004394 2.8e-67 259.6 263 64.6
HanXRQChr05g0141401 Helianthus annuus HOM05D003921 ORTHO05D004394 2.8e-67 259.6 263 61.2
C03p52650 Brassica napus HOM05D003921 ORTHO05D004394 6.3e-67 258.5 263 62.7
Thhalv10021245m.g Eutrema salsugineum HOM05D003921 ORTHO05D004394 6.3e-67 258.5 295 56.6
HanXRQChr08g0224051 Helianthus annuus HOM05D003921 ORTHO05D004394 6.3e-67 258.5 263 60.5
CSS0023430 Camellia sinensis var. sinensis HOM05D003921 ORTHO05D004394 8.2e-67 258.1 270 55.2
Lj1P984T37 Lonicera japonica HOM05D003921 ORTHO05D004394 1.1e-66 257.7 265 57.4
CARHR098540 Cardamine hirsuta HOM05D003921 ORTHO05D004394 1.8e-66 256.9 286 66.8
BcaB04g19210 Brassica carinata HOM05D003921 ORTHO05D004394 2.4e-66 256.5 258 62.4
Nitab4.5_0005477g0070 Nicotiana tabacum HOM05D003921 ORTHO05D004394 4.1e-66 255.8 296 57.1
Solyc01g006090.3 Solanum lycopersicum HOM05D003921 ORTHO05D004394 4.1e-66 255.8 287 54.4
Carub.0003s2281 Capsella rubella HOM05D003921 ORTHO05D004394 7.0e-66 255.0 290 53.8
Nitab4.5_0001620g0040 Nicotiana tabacum HOM05D003921 ORTHO05D004394 2.0e-65 253.4 268 60.1
AL3G36960 Arabidopsis lyrata HOM05D003921 ORTHO05D004394 5.9e-65 251.9 284 53.9
Solyc01g006170.4 Solanum lycopersicum HOM05D003921 ORTHO05D004394 1.0e-64 251.1 294 53.1
THA.LOC104808294 Tarenaya hassleriana HOM05D003921 ORTHO05D004394 1.0e-64 251.1 291 53.3
Sc03g0002240 Simmondsia chinensis HOM05D003921 ORTHO05D004394 2.9e-64 249.6 290 52.8
Lsat_1_v5_gn_6_96180 Lactuca sativa HOM05D003921 ORTHO05D004394 3.8e-64 249.2 262 54.2
Sopen01g002180 Solanum pennellii HOM05D003921 ORTHO05D004394 5.0e-64 248.8 290 53.1
PGSC0003DMG400032192 Solanum tuberosum HOM05D003921 ORTHO05D004394 8.5e-64 248.1 290 53.1
Dinv22984 Davidia involucrata HOM05D003921 ORTHO05D004394 3.2e-63 246.1 287 53.3
PGSC0003DMG400032141 Solanum tuberosum HOM05D003921 ORTHO05D004394 3.2e-63 246.1 297 51.9
Ah.06g188120 Amaranthus hybridus HOM05D003921 ORTHO05D004394 6.1e-62 241.9 296 58.1
ECA234G0656 Erigeron canadensis HOM05D003921 ORTHO05D004394 6.1e-62 241.9 298 52.0
CANSAT11G2317 Cannabis sativa HOM05D003921 ORTHO05D004394 1.2e-60 237.7 244 55.3
Zm00001eb235000 Zea mays HOM05D003921 ORTHO05D004394 1.5e-60 237.3 292 58.6
EL10Ac4g09457 Beta vulgaris HOM05D003921 ORTHO05D004394 2.0e-60 236.9 255 54.5
Ah.06g188100 Amaranthus hybridus HOM05D003921 ORTHO05D004394 7.5e-60 235.0 292 57.5
Ciclev10006627m.g Citrus clementina HOM05D003921 ORTHO05D004394 1.3e-59 234.2 273 61.2
AUR62000393 Chenopodium quinoa HOM05D003921 ORTHO05D004394 3.7e-59 232.6 287 48.4
Zm00001eb104900 Zea mays HOM05D003921 ORTHO05D004394 4.8e-59 232.3 251 62.2
CAN.G140.50 Capsicum annuum HOM05D003921 ORTHO05D004394 7.0e-58 228.4 296 57.8
Sp3g20420 Schrenkiella parvula HOM05D003921 ORTHO05D004394 9.1e-58 228.0 289 50.9
Rhsim11G0028700 Rhododendron simsii HOM05D003921 ORTHO05D004394 1.1e-55 221.1 291 50.5
FAN10G0556 Fragaria x ananassa HOM05D003921 ORTHO05D004394 1.9e-55 220.3 193 70.5
Peaxi162Scf00441g00013 Petunia axillaris HOM05D003921 ORTHO05D004394 1.9e-55 220.3 263 51.7
Ah.06g188150 Amaranthus hybridus HOM05D003921 ORTHO05D004394 5.5e-55 218.8 280 56.8
AUR62006749 Chenopodium quinoa HOM05D003921 ORTHO05D004394 3.6e-54 216.1 289 52.6
Ca_27419_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 2.3e-53 213.4 183 86.9
Os07g0475800 Oryza sativa ssp. japonica HOM05D003921 ORTHO05D004394 3.0e-53 213.0 252 59.5
ECA233G5254 Erigeron canadensis HOM05D003921 ORTHO05D004394 8.8e-53 211.5 239 55.6
Nitab4.5_0000249g0460 Nicotiana tabacum HOM05D003921 ORTHO05D004394 8.3e-51 204.9 272 50.4
Oeu019922.1 Olea europaea HOM05D003921 ORTHO05D004394 1.2e-49 201.1 249 60.6
CDE04G0151 Ceratophyllum demersum HOM05D003921 ORTHO05D004394 9.5e-47 191.4 206 61.2
SHI13875 Sapria himalayana HOM05D003921 ORTHO05D004394 1.0e-45 188.0 273 48.4
Nitab4.5_0004389g0020 Nicotiana tabacum HOM05D003921 ORTHO05D004394 5.9e-41 172.2 292 41.4
SMO174G0035 Selaginella moellendorffii HOM05D003921 ORTHO05D004394 1.0e-40 171.4 260 44.2
Sopen01g002090 Solanum pennellii HOM05D003921 ORTHO05D004394 1.0e-40 171.4 209 51.7
Nn1g08099 Nelumbo nucifera HOM05D003921 ORTHO05D004394 1.7e-40 170.6 124 69.4
MSTRG.14093 Avicennia marina HOM05D003921 ORTHO05D004394 2.9e-40 169.9 177 67.8
Oeu019920.1 Olea europaea HOM05D003921 ORTHO05D004394 1.1e-39 167.9 321 49.8
HPP92_008700 Vanilla planifolia HOM05D003921 ORTHO05D004394 4.3e-39 166.0 123 65.9
BcaC09g49189 Brassica carinata HOM05D003921 ORTHO05D004394 5.6e-39 165.6 185 71.4
Pp3c6_25210 Physcomitrium patens HOM05D003921 ORTHO05D004394 7.3e-39 165.2 276 38.8
DCAR_018123 Daucus carota HOM05D003921 ORTHO05D004394 1.8e-37 160.6 273 48.0
Oeu021724.1 Olea europaea HOM05D003921 ORTHO05D004394 3.1e-37 159.8 273 42.5
Nn1g01220 Nelumbo nucifera HOM05D003921 ORTHO05D004394 7.5e-36 155.2 121 63.6
Eucgr.K01460 Eucalyptus grandis HOM05D003921 ORTHO05D004394 2.9e-35 153.3 130 60.8
Ah.06g188070 Amaranthus hybridus HOM05D003921 ORTHO05D004394 1.4e-34 151.0 187 57.8
GSVIVG01018514001 Vitis vinifera HOM05D003921 ORTHO05D004394 1.9e-34 150.6 288 39.2
Mapoly0140s0011 Marchantia polymorpha HOM05D003921 ORTHO05D004394 1.2e-33 147.9 253 39.5
Oeu023230.1 Olea europaea HOM05D003921 ORTHO05D004394 1.6e-33 147.5 283 39.6
RcHm_v2.0_Chr5g0027461 Rosa chinensis HOM05D003921 ORTHO05D017011 4.3e-31 139.4 125 58.4
MSTRG.14095 Avicennia marina HOM05D003921 ORTHO05D004394 2.8e-30 136.7 117 65.8
MSTRG.5717 Avicennia marina HOM05D003921 ORTHO05D004394 1.4e-29 134.4 187 59.9
AagrBONN_evm.TU.Sc2ySwM_228.1082 Anthoceros agrestis HOM05D003921 ORTHO05D004394 9.8e-28 128.3 284 33.8
Hund09280 Selenicereus undatus HOM05D003921 ORTHO05D004394 2.7e-25 120.2 117 61.5
Hund09282 Selenicereus undatus HOM05D003921 ORTHO05D004394 2.7e-25 120.2 117 61.5
PRCOL_00003036 Prasinoderma coloniale HOM05D003921 ORTHO05D004394 3.5e-25 119.8 235 32.3
Ca_29708_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 5.1e-24 115.9 83 80.7
Nn4g26407 Nelumbo nucifera HOM05D003921 ORTHO05D004394 1.9e-23 114.0 111 54.1
CBR_g18581 Chara braunii HOM05D001161 ORTHO05D000497 5.6e-23 112.5 252 36.1
ATR0564G120 Amborella trichopoda HOM05D003921 ORTHO05D004394 1.1e-21 108.2 195 41.0
Actinidia39598 Actinidia chinensis HOM05D003921 ORTHO05D004394 6.4e-19 99.0 97 57.7
Prupe.2G115300 Prunus persica HOM05D003921 ORTHO05D004394 6.4e-19 99.0 283 34.6
Actinidia25037 Actinidia chinensis HOM05D003921 ORTHO05D004394 8.3e-19 98.6 64 73.4
Cre07.g351750 Chlamydomonas reinhardtii HOM05D003921 ORTHO05D004394 1.1e-18 98.2 262 34.7
MCO16G303 Micromonas commoda HOM05D003921 ORTHO05D004394 1.9e-18 97.4 206 35.0
Nn4g26401 Nelumbo nucifera HOM05D003921 ORTHO05D004394 5.1e-16 89.4 66 68.2
Actinidia31394 Actinidia chinensis HOM05D003921 ORTHO05D004394 8.6e-16 88.6 74 66.2
Ah.06g188140 Amaranthus hybridus HOM05D003921 ORTHO05D004394 9.6e-15 85.1 103 56.3
Ah.06g188080 Amaranthus hybridus HOM05D003921 ORTHO05D004394 2.8e-14 83.6 88 59.1
Actinidia13554 Actinidia chinensis HOM05D003921 ORTHO05D004394 8.1e-14 82.0 56 71.4
Gohir.D12G264333 Gossypium hirsutum HOM05D003921 ORTHO05D004394 5.8e-12 75.9 267 28.8
Gorai.008G283700 Gossypium raimondii HOM05D003921 ORTHO05D004394 3.8e-11 73.2 274 30.3
Oeu039213.1 Olea europaea HOM05D003921 ORTHO05D004394 5.4e-10 69.3 73 56.2
FvH4_1g22470 Fragaria vesca HOM05D003475 ORTHO05D035452 2.3e-08 63.9 49 67.3
Dinv10307 Davidia involucrata HOM05D003921 ORTHO05D004394 5.1e-08 62.8 36 80.6
Prupe.2G115400 Prunus persica HOM05D003921 ORTHO05D004394 1.3e-06 58.2 60 61.7
DCAR_013591 Daucus carota HOM05D003921 ORTHO05D004394 3.6e-06 56.6 101 40.6


User provided reference genes

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