Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G180100 Phaseolus vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 2068.5 974 100.0
VMungo0720G1572 Vigna mungo HOM05D004082 ORTHO05D004729 0.0e+00 1961.8 975 94.2
Glyma.20G233900 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1866.7 965 90.9
Glyma.10G154400 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1832.0 965 89.5
Lj5g0001168 Lotus japonicus HOM05D004082 ORTHO05D004729 0.0e+00 1782.7 969 86.2
Ca_10110_v3 Cicer arietinum L. HOM05D004082 ORTHO05D004729 0.0e+00 1755.3 965 85.4
Medtr1g082890 Medicago truncatula HOM05D004082 ORTHO05D004729 0.0e+00 1755.0 955 86.3
TPR.G6044 Trifolium pratense HOM05D004082 ORTHO05D004729 0.0e+00 1752.6 962 85.6
Psat6g151160 Pisum sativum HOM05D004082 ORTHO05D004729 0.0e+00 1744.6 962 84.8
Lj1g0013013 Lotus japonicus HOM05D004082 ORTHO05D004729 0.0e+00 1691.0 959 81.6
Glyma.19G235500 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1690.2 957 82.5
Medtr7g113570 Medicago truncatula HOM05D004082 ORTHO05D004729 0.0e+00 1677.9 956 81.3
TPR.G33180 Trifolium pratense HOM05D004082 ORTHO05D004729 0.0e+00 1677.1 966 81.3
Phvul.006G092100 Phaseolus vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1670.6 957 81.7
Psat3g011080 Pisum sativum HOM05D004082 ORTHO05D004729 0.0e+00 1665.6 967 81.3
Glyma.03G238100 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1662.1 971 80.5
Haze_04194 Corylus avellana HOM05D004082 ORTHO05D004729 0.0e+00 1661.7 959 80.7
arahy.Tifrunner.gnm1.ann1.7P2G6T Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1659.0 965 80.0
VMungo0540G1737 Vigna mungo HOM05D004082 ORTHO05D004729 0.0e+00 1649.4 956 81.1
Lalb_Chr02g0148261 Lupinus albus HOM05D004082 ORTHO05D004729 0.0e+00 1648.6 958 80.8
QL03p007071 Quercus lobata HOM05D004082 ORTHO05D004729 0.0e+00 1642.1 967 79.8
arahy.Tifrunner.gnm1.ann1.DUKX6J Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1641.7 965 79.4
CiPaw.07G018100 Carya illinoinensis HOM05D004082 ORTHO05D004729 0.0e+00 1639.4 970 78.8
arahy.Tifrunner.gnm1.ann1.0R76NZ Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1636.3 974 78.4
Dinv40289 Davidia involucrata HOM05D004082 ORTHO05D004729 0.0e+00 1632.1 956 79.7
TAR636G3250 Trochodendron aralioides HOM05D004082 ORTHO05D004729 0.0e+00 1631.3 964 78.5
Lalb_Chr18g0045631 Lupinus albus HOM05D004082 ORTHO05D004729 0.0e+00 1627.5 955 79.8
arahy.Tifrunner.gnm1.ann1.MMBS5J Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1627.1 969 78.6
GSVIVG01000073001 Vitis vinifera HOM05D004082 ORTHO05D004729 0.0e+00 1625.5 955 79.6
TWI56G0720 Tripterygium wilfordii HOM05D004082 ORTHO05D004729 0.0e+00 1625.1 966 78.1
MD12G1218800 Malus domestica HOM05D004082 ORTHO05D004729 0.0e+00 1618.2 966 79.2
Potri.013G021200 Populus trichocarpa HOM05D004082 ORTHO05D004729 0.0e+00 1618.2 964 78.5
Manes.08G120500 Manihot esculenta HOM05D004082 ORTHO05D004729 0.0e+00 1616.7 964 78.5
CSS0005144 Camellia sinensis var. sinensis HOM05D004082 ORTHO05D004729 0.0e+00 1616.3 960 78.9
Prupe.6G325300 Prunus persica HOM05D004082 ORTHO05D004729 0.0e+00 1614.7 966 78.8
Ciclev10000150m.g Citrus clementina HOM05D004082 ORTHO05D004729 0.0e+00 1612.8 979 77.7
Thecc.05G302900 Theobroma cacao HOM05D004082 ORTHO05D004729 0.0e+00 1611.3 966 77.7
Cpa.g.sc48.57 Carica papaya HOM05D004082 ORTHO05D004729 0.0e+00 1609.7 967 78.4
Duzib106G1815 Durio zibethinus HOM05D004082 ORTHO05D004729 0.0e+00 1609.3 965 77.8
Gohir.D13G110800 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1605.1 963 77.5
Duzib177G1172 Durio zibethinus HOM05D004082 ORTHO05D004729 0.0e+00 1599.7 963 77.7
Sabra13G0023600 Salix brachista HOM05D004082 ORTHO05D004729 0.0e+00 1597.8 964 77.5
FvH4_6g05900 Fragaria vesca HOM05D004082 ORTHO05D004729 0.0e+00 1593.6 967 77.6
CANSAT54G2367 Cannabis sativa HOM05D004082 ORTHO05D004729 0.0e+00 1591.2 969 77.7
RcHm_v2.0_Chr3g0454891 Rosa chinensis HOM05D004082 ORTHO05D004729 0.0e+00 1585.1 966 77.0
FAN05G5148 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1584.3 975 76.8
Gorai.007G297200 Gossypium raimondii HOM05D004082 ORTHO05D004729 0.0e+00 1584.3 967 76.3
FAN05G3196 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1583.5 975 76.6
PGR031G3794 Punica granatum HOM05D004082 ORTHO05D004729 0.0e+00 1576.6 971 76.9
DCAR_022172 Daucus carota HOM05D004082 ORTHO05D004729 0.0e+00 1575.5 972 76.0
Lj5C472G3 Lonicera japonica HOM05D004082 ORTHO05D004729 0.0e+00 1574.3 966 76.0
Lj5C530G2 Lonicera japonica HOM05D004082 ORTHO05D004729 0.0e+00 1571.2 966 76.0
ECA236G4884 Erigeron canadensis HOM05D004082 ORTHO05D004729 0.0e+00 1569.3 955 76.3
Aqoxy5G00500 Aquilegia oxysepala HOM05D004082 ORTHO05D004729 0.0e+00 1568.9 963 76.0
Sc16g0008480 Simmondsia chinensis HOM05D004082 ORTHO05D004729 0.0e+00 1568.5 969 75.3
Peaxi162Scf00037g00423 Petunia axillaris HOM05D004082 ORTHO05D004729 0.0e+00 1565.8 962 75.5
FAN14G3006 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1565.4 955 77.3
Sed0016495 Sechium edule HOM05D004082 ORTHO05D004729 0.0e+00 1561.2 963 75.4
MSTRG.27997 Avicennia marina HOM05D004082 ORTHO05D004729 0.0e+00 1558.5 965 75.8
Cc02_g33390 Coffea canephora HOM05D004082 ORTHO05D004729 0.0e+00 1558.5 965 75.6
HanXRQChr02g0046191 Helianthus annuus HOM05D004082 ORTHO05D004729 0.0e+00 1555.4 966 75.6
Eucgr.H04490 Eucalyptus grandis HOM05D004082 ORTHO05D004729 0.0e+00 1554.3 975 74.5
Prupe.6G325400 Prunus persica HOM05D004082 ORTHO05D004729 0.0e+00 1553.9 965 76.0
SalBow3G1583 Salvia bowleyana HOM05D004082 ORTHO05D004729 0.0e+00 1551.6 955 75.4
PGSC0003DMG401024737 Solanum tuberosum HOM05D004082 ORTHO05D004729 0.0e+00 1549.3 966 74.3
Sopen01g042650 Solanum pennellii HOM05D004082 ORTHO05D004729 0.0e+00 1544.3 967 74.4
Solyc01g099090.3 Solanum lycopersicum HOM05D004082 ORTHO05D004729 0.0e+00 1541.6 967 74.1
Oeu038297.1 Olea europaea HOM05D004082 ORTHO05D004729 0.0e+00 1540.8 966 75.6
CAN.G1034.45 Capsicum annuum HOM05D004082 ORTHO05D004729 0.0e+00 1538.1 966 74.1
Ah.06g189390 Amaranthus hybridus HOM05D004082 ORTHO05D004729 0.0e+00 1537.7 965 74.4
PSO832G1048 Papaver somniferum HOM05D004082 ORTHO05D004729 0.0e+00 1535.8 965 73.7
MD12G1218900 Malus domestica HOM05D004082 ORTHO05D004729 0.0e+00 1535.4 965 74.9
DCAR_003333 Daucus carota HOM05D004082 ORTHO05D004729 0.0e+00 1533.1 965 74.2
Hund07072 Selenicereus undatus HOM05D004082 ORTHO05D004729 0.0e+00 1531.5 957 75.0
EL10Ac4g09354 Beta vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1531.2 963 74.2
TWI56G1006 Tripterygium wilfordii HOM05D004082 ORTHO05D004729 0.0e+00 1526.9 966 74.5
MELO3C015324.2 Cucumis melo HOM05D004082 ORTHO05D004729 0.0e+00 1526.5 970 73.6
CsaV3_1G038970 Cucumis sativus L. HOM05D004082 ORTHO05D004729 0.0e+00 1524.6 964 74.4
FAN09G0543 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1523.8 921 77.7
Aqoxy2G03354 Aquilegia oxysepala HOM05D004082 ORTHO05D004729 0.0e+00 1516.1 973 71.7
SGA_v2.0_scaffold81G26069 Striga asiatica HOM05D004082 ORTHO05D004729 0.0e+00 1514.2 962 73.0
ClCG03G016970 Citrullus lanatus HOM05D004082 ORTHO05D004729 0.0e+00 1512.3 963 73.5
AUR62000827 Chenopodium quinoa HOM05D004082 ORTHO05D004729 0.0e+00 1510.4 970 73.5
Migut.N02007 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1507.3 959 74.1
RhsimUnG0226200 Rhododendron simsii HOM05D004082 ORTHO05D004729 0.0e+00 1498.8 935 75.7
HPP92_001021 Vanilla planifolia HOM05D004082 ORTHO05D004729 0.0e+00 1497.6 961 72.4
Lsat_1_v5_gn_9_86081 Lactuca sativa HOM05D004082 ORTHO05D004729 0.0e+00 1497.3 969 72.4
Zm00001eb287240 Zea mays HOM05D004082 ORTHO05D004729 0.0e+00 1490.7 967 71.9
vmacro05017 Vaccinium macrocarpon HOM05D004082 ORTHO05D004729 0.0e+00 1488.0 961 73.8
Nn1g02247 Nelumbo nucifera HOM05D004082 ORTHO05D004729 0.0e+00 1483.4 970 72.2
Migut.B01033 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1479.9 958 71.9
Nitab4.5_0000137g0200 Nicotiana tabacum HOM05D004082 ORTHO05D004729 0.0e+00 1479.9 957 73.0
Os05g0391500 Oryza sativa ssp. japonica HOM05D004082 ORTHO05D004729 0.0e+00 1478.4 969 71.0
AUR62005147 Chenopodium quinoa HOM05D004082 ORTHO05D004729 0.0e+00 1474.1 964 72.3
THA.LOC104805875 Tarenaya hassleriana HOM05D004082 ORTHO05D004729 0.0e+00 1451.0 961 71.5
COL.COLO4_13463 Corchorus olitorius HOM05D004082 ORTHO05D004729 0.0e+00 1448.0 991 70.5
Aa31sc136G30 Aethionema arabicum HOM05D004082 ORTHO05D004729 0.0e+00 1436.4 964 71.1
AL1G19440 Arabidopsis lyrata HOM05D004082 ORTHO05D004729 0.0e+00 1434.9 972 70.0
Carub.0001s0833 Capsella rubella HOM05D004082 ORTHO05D004729 0.0e+00 1432.9 963 70.2
vmacro22529 Vaccinium macrocarpon HOM05D004082 ORTHO05D004729 0.0e+00 1431.4 875 76.3
Gohir.A11G265200 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1427.2 875 75.5
A08p34860 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1423.3 965 70.1
CARHR008900 Cardamine hirsuta HOM05D004082 ORTHO05D004729 0.0e+00 1422.5 958 70.0
BraA08t35397Z Brassica rapa HOM05D004082 ORTHO05D004729 0.0e+00 1421.4 965 69.6
Hund21813 Selenicereus undatus HOM05D004082 ORTHO05D004729 0.0e+00 1420.6 983 69.4
AT1G09010 Arabidopsis thaliana HOM05D004082 ORTHO05D004729 0.0e+00 1420.2 967 69.2
Sp1g07620 Schrenkiella parvula HOM05D004082 ORTHO05D004729 0.0e+00 1414.8 963 69.7
Gohir.A13G107600 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1406.3 842 77.2
A06p05830 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1406.0 963 69.1
BolC8t48880H Brassica oleracea HOM05D004082 ORTHO05D004729 0.0e+00 1405.2 967 69.4
C05p07040 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1402.1 964 69.1
BolC5t29459H Brassica oleracea HOM05D004082 ORTHO05D004729 0.0e+00 1402.1 964 69.1
C08p12400 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1399.8 967 69.2
Thhalv10006730m.g Eutrema salsugineum HOM05D004082 ORTHO05D004729 0.0e+00 1399.8 963 69.4
arahy.Tifrunner.gnm1.ann1.HF1TD9 Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1390.9 762 83.7
BcaB07g34118 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1387.9 961 69.1
Gohir.D11G275400 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1385.2 850 75.5
unitig_52.g17387 Utricularia gibba HOM05D004082 ORTHO05D004729 0.0e+00 1360.5 976 66.6
SHI18140 Sapria himalayana HOM05D004082 ORTHO05D004729 0.0e+00 1357.4 996 64.8
Ca_09358_v3 Cicer arietinum L. HOM05D004082 ORTHO05D004729 0.0e+00 1342.4 780 80.9
BcaC07g38468 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1323.1 967 66.4
BcaC07g38465 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1296.2 964 65.5
BcaC05g24752 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1270.0 964 64.3
Gorai.013G124100 Gossypium raimondii HOM05D004082 ORTHO05D004729 0.0e+00 1245.0 761 76.3
BraA06t23793Z Brassica rapa HOM05D004082 ORTHO05D004729 0.0e+00 1225.3 839 68.7
Migut.O00505 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1220.3 778 74.0
ATR0626G266 Amborella trichopoda HOM05D004082 ORTHO05D004729 0.0e+00 1170.2 784 70.8
Mapoly0034s0073 Marchantia polymorpha HOM05D004082 ORTHO05D004729 5.1e-310 1067.8 969 54.1
CDE05G1313 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 1.5e-306 1056.2 679 73.6
SMO367G0677 Selaginella moellendorffii HOM05D004082 ORTHO05D004729 3.2e-304 1048.5 955 54.3
Lj9A80G16 Lonicera japonica HOM05D004082 ORTHO05D004729 4.7e-284 981.5 704 67.9
Pp3c8_17060 Physcomitrium patens HOM05D004082 ORTHO05D004729 4.9e-281 971.5 962 52.1
AagrBONN_evm.TU.Sc2ySwM_368.1060 Anthoceros agrestis HOM05D004082 ORTHO05D004729 3.1e-275 952.2 954 50.0
Pp3c15_10050 Physcomitrium patens HOM05D004082 ORTHO05D004729 6.9e-267 924.5 969 49.5
Nitab4.5_0003227g0010 Nicotiana tabacum HOM05D004082 ORTHO05D004729 2.6e-250 869.4 556 74.1
CBR_g23107 Chara braunii HOM05D004082 ORTHO05D004729 1.7e-236 823.5 841 50.4
Nitab4.5_0003227g0030 Nicotiana tabacum HOM05D004082 ORTHO05D004729 1.7e-201 707.2 402 78.4
MBI17_g12862_MAGBIO Magnolia biondii HOM05D004082 ORTHO05D004729 4.2e-131 473.4 286 76.9
QL03p006635 Quercus lobata HOM05D004082 ORTHO05D004729 2.4e-118 431.0 343 63.3
Atru.chr1.88 Acer truncatum HOM05D004082 ORTHO05D004729 1.1e-115 422.2 404 55.9
CAN.G623.33 Capsicum annuum HOM05D004082 ORTHO05D004729 2.4e-110 404.4 372 57.8
Atru.chr2.402 Acer truncatum HOM05D004082 ORTHO05D004729 1.4e-102 378.6 213 81.2
Gorai.013G124200 Gossypium raimondii HOM05D004082 ORTHO05D004729 1.2e-88 332.4 186 81.2
SEGI_31510 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 7.0e-86 323.2 202 73.8
QL03p006592 Quercus lobata HOM05D004082 ORTHO05D004729 3.9e-84 317.4 275 58.9
SEGI_00836 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 7.0e-78 296.6 159 83.6
Atru.chr1.89 Acer truncatum HOM05D004082 ORTHO05D004729 5.6e-67 260.4 143 81.8
Lj9A80G18 Lonicera japonica HOM05D004082 ORTHO05D004729 1.2e-66 259.2 211 58.3
CDE05G2291 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 1.8e-65 255.4 156 73.1
PRCOL_00002375 Prasinoderma coloniale HOM05D004082 ORTHO05D004729 1.4e-62 245.7 739 28.0
QL03p006553 Quercus lobata HOM05D004082 ORTHO05D004729 6.4e-55 220.3 379 38.8
arahy.Tifrunner.gnm1.ann1.3W7GTE Arachis hypogaea HOM05D004082 ORTHO05D004729 4.6e-45 187.6 94 84.0
Cfa025543 Carpinus fangiana HOM05D004082 ORTHO05D004729 1.9e-43 182.2 947 25.0
CAN.G22.21 Capsicum annuum HOM05D004082 ORTHO05D004729 1.6e-42 179.1 150 58.7
Atru.chr2.403 Acer truncatum HOM05D004082 ORTHO05D004729 7.1e-38 163.7 140 59.3
Hund21239 Selenicereus undatus HOM05D004082 ORTHO05D004729 7.4e-35 153.7 157 49.7
CDE05G1624 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 2.4e-33 148.7 89 79.8
SGA_v2.0_scaffold54G19617 Striga asiatica HOM05D004082 ORTHO05D004729 5.3e-33 147.5 148 52.0
Lj9A80T26 Lonicera japonica HOM05D004082 ORTHO05D004729 9.0e-33 146.7 92 73.9
ATR0626G076 Amborella trichopoda HOM05D004082 ORTHO05D004729 1.7e-31 142.5 102 62.7
CAN.G623.34 Capsicum annuum HOM05D004082 ORTHO05D004729 1.1e-25 123.2 88 62.5
VMungo1127G1159 Vigna mungo HOM05D004082 ORTHO05D004729 3.1e-25 121.7 184 38.6
CBR_g49561 Chara braunii HOM05D000019 ORTHO05D000353 7.6e-24 117.1 183 38.3
QL03p073950 Quercus lobata HOM05D004082 ORTHO05D004729 2.5e-19 102.1 118 47.5
CAN.G2092.2 Capsicum annuum HOM05D004082 ORTHO05D004729 2.4e-17 95.5 114 48.2
SGA_v2.0_scaffold54G19618 Striga asiatica HOM05D004082 ORTHO05D004729 4.1e-17 94.7 128 42.2
Cfa024522 Carpinus fangiana HOM05D004082 ORTHO05D004729 1.2e-16 93.2 500 24.0
Hund20275 Selenicereus undatus HOM05D004082 ORTHO05D004729 3.9e-12 78.2 46 71.7
QL03p007034 Quercus lobata HOM05D000125 ORTHO05D000120 8.8e-12 77.0 71 56.3
Solyc12g038840.2 Solanum lycopersicum HOM05D004082 ORTHO05D004729 1.1e-09 70.1 76 48.7
Hma1.2p1_0928F.1_g237760 Hydrangea macrophylla HOM05D004082 ORTHO05D004729 2.6e-08 65.5 44 70.5
CSS0034197 Camellia sinensis var. sinensis HOM05D000231 ORTHO05D000132 1.0e-07 63.5 48 64.6
SEGI_10811 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 5.0e-07 61.2 44 63.6


User provided reference genes

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