Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G129000 Phaseolus vulgaris HOM05D006440 ORTHO05D003987 0.0e+00 1213.4 591 100.0
VMungo0720G1034 Vigna mungo HOM05D006440 ORTHO05D003987 0.0e+00 1164.1 591 95.8
Glyma.20G202700 Glycine max HOM05D006440 ORTHO05D003987 5.6e-304 1047.0 592 87.2
Lalb_Chr02g0150571 Lupinus albus HOM05D006440 ORTHO05D003987 2.6e-301 1038.1 593 84.3
Glyma.10G188100 Glycine max HOM05D006440 ORTHO05D003987 5.8e-301 1036.9 592 85.1
Ca_09816_v3 Cicer arietinum L. HOM05D006440 ORTHO05D003987 7.8e-298 1026.5 594 83.3
Lj5g0005322 Lotus japonicus HOM05D006440 ORTHO05D003987 3.0e-297 1024.6 593 83.8
arahy.Tifrunner.gnm1.ann1.WJ3SQN Arachis hypogaea HOM05D006440 ORTHO05D003987 7.3e-288 993.4 580 82.6
Medtr1g073920 Medicago truncatula HOM05D006440 ORTHO05D003987 9.6e-288 993.0 595 81.5
arahy.Tifrunner.gnm1.ann1.A0C0SS Arachis hypogaea HOM05D006440 ORTHO05D003987 1.9e-283 978.8 591 81.0
QL06p016694 Quercus lobata HOM05D006440 ORTHO05D003987 8.1e-271 936.8 592 76.0
Ciclev10004596m.g Citrus clementina HOM05D006440 ORTHO05D003987 1.7e-268 929.1 595 74.5
CiPaw.02G114500 Carya illinoinensis HOM05D006440 ORTHO05D003987 4.2e-267 924.5 593 75.2
Duzib212G0326 Durio zibethinus HOM05D006440 ORTHO05D003987 8.7e-265 916.8 593 74.9
GSVIVG01027730001 Vitis vinifera HOM05D006440 ORTHO05D003987 2.5e-264 915.2 598 73.7
Manes.03G166900 Manihot esculenta HOM05D006440 ORTHO05D003987 1.6e-263 912.5 593 73.7
Potri.008G165000 Populus trichocarpa HOM05D006440 ORTHO05D003987 1.8e-262 909.1 593 74.4
Eucgr.H03137 Eucalyptus grandis HOM05D006440 ORTHO05D003987 1.3e-260 902.9 593 73.2
TAR365G0504 Trochodendron aralioides HOM05D006440 ORTHO05D003987 6.5e-260 900.6 596 72.5
Gohir.A09G225400 Gossypium hirsutum HOM05D006440 ORTHO05D003987 1.1e-259 899.8 593 74.4
Atru.chr4.2134 Acer truncatum HOM05D006440 ORTHO05D003987 1.4e-259 899.4 597 73.2
Potri.010G073600 Populus trichocarpa HOM05D006440 ORTHO05D003987 1.2e-258 896.3 593 73.0
CsaV3_3G012320 Cucumis sativus L. HOM05D006440 ORTHO05D003987 2.1e-258 895.6 593 72.3
Sed0013572 Sechium edule HOM05D006440 ORTHO05D003987 1.3e-257 892.9 593 73.2
CSS0026181 Camellia sinensis var. sinensis HOM05D006440 ORTHO05D003987 5.1e-257 891.0 597 72.4
MELO3C006441.2 Cucumis melo HOM05D006440 ORTHO05D003987 8.7e-257 890.2 593 72.3
Psat6g132960 Pisum sativum HOM05D006440 ORTHO05D003987 8.7e-257 890.2 592 75.0
CANSAT78G1511 Cannabis sativa HOM05D006440 ORTHO05D003987 1.9e-256 889.0 592 71.6
Gohir.D09G227100 Gossypium hirsutum HOM05D006440 ORTHO05D003987 3.3e-256 888.3 592 73.1
Nn1g02707 Nelumbo nucifera HOM05D006440 ORTHO05D003987 9.7e-256 886.7 601 71.2
TWI09G0180 Tripterygium wilfordii HOM05D006440 ORTHO05D003987 1.5e-253 879.4 593 71.8
Prupe.1G035000 Prunus persica HOM05D006440 ORTHO05D003987 1.3e-252 876.3 593 71.8
COL.COLO4_15832 Corchorus olitorius HOM05D006440 ORTHO05D003987 5.5e-251 870.9 593 71.8
Rhsim04G0187900 Rhododendron simsii HOM05D006440 ORTHO05D003987 2.1e-250 869.0 630 68.3
MD13G1210600 Malus domestica HOM05D006440 ORTHO05D003987 1.0e-249 866.7 593 71.2
ClCG05G004420 Citrullus lanatus HOM05D006440 ORTHO05D003987 3.8e-244 848.2 632 66.0
vmacro08450 Vaccinium macrocarpon HOM05D006440 ORTHO05D003987 2.5e-243 845.5 669 64.1
HanXRQChr13g0418761 Helianthus annuus HOM05D006440 ORTHO05D003987 3.2e-243 845.1 598 68.9
Cc03_g05160 Coffea canephora HOM05D006440 ORTHO05D003987 9.4e-243 843.6 602 67.9
Sabra10G0034700 Salix brachista HOM05D006440 ORTHO05D003987 7.9e-242 840.5 632 66.3
PGR004G0512 Punica granatum HOM05D006440 ORTHO05D003987 5.1e-241 837.8 592 68.2
Sopen09g032600 Solanum pennellii HOM05D006440 ORTHO05D003987 7.4e-240 833.9 593 68.3
Dinv29887 Davidia involucrata HOM05D006440 ORTHO05D003188 9.7e-240 833.6 554 73.8
DCAR_027296 Daucus carota HOM05D006440 ORTHO05D003987 2.2e-239 832.4 596 67.6
CAN.G793.7 Capsicum annuum HOM05D006440 ORTHO05D003987 1.8e-238 829.3 595 68.4
TPR.G26431 Trifolium pratense HOM05D006440 ORTHO05D003987 3.5e-237 825.1 483 82.6
MBI18_g37356_MAGBIO Magnolia biondii HOM05D006440 ORTHO05D003987 1.0e-236 823.5 646 64.2
RcHm_v2.0_Chr4g0391871 Rosa chinensis HOM05D006440 ORTHO05D003987 1.9e-235 819.3 595 66.9
Aqoxy2G03617 Aquilegia oxysepala HOM05D006440 ORTHO05D003987 7.2e-235 817.4 596 67.1
EL10Ac3g05914 Beta vulgaris HOM05D006440 ORTHO05D003987 9.4e-235 817.0 597 67.7
FAN17G2886 Fragaria x ananassa HOM05D006440 ORTHO05D003987 9.4e-235 817.0 595 67.1
FvH4_4g03210 Fragaria vesca HOM05D006440 ORTHO05D003987 8.0e-234 813.9 595 66.9
Migut.G00449 Erythranthe guttata HOM05D006440 ORTHO05D003987 1.1e-232 810.1 594 66.3
Gorai.006G249000 Gossypium raimondii HOM05D006440 ORTHO05D003987 2.8e-231 805.4 547 73.1
SalBow2G2218 Salvia bowleyana HOM05D006440 ORTHO05D003987 3.7e-231 805.1 615 64.7
MSTRG.9914 Avicennia marina HOM05D006440 ORTHO05D003987 2.6e-229 798.9 595 66.7
THA.LOC104815988 Tarenaya hassleriana HOM05D006440 ORTHO05D003987 1.3e-228 796.6 593 64.8
ECA240G3037 Erigeron canadensis HOM05D006440 ORTHO05D003987 1.2e-226 790.0 569 66.4
PSO063G3815 Papaver somniferum HOM05D006440 ORTHO05D003987 1.2e-226 790.0 594 63.8
PSO017G7287 Papaver somniferum HOM05D006440 ORTHO05D003987 4.7e-226 788.1 594 64.0
Sp2g08350 Schrenkiella parvula HOM05D006440 ORTHO05D003987 1.5e-224 783.1 595 63.9
SGA_v2.0_scaffold88G27269 Striga asiatica HOM05D006440 ORTHO05D003987 2.6e-224 782.3 590 66.3
Hund04543 Selenicereus undatus HOM05D006440 ORTHO05D003987 4.4e-224 781.6 594 64.3
Thhalv10003170m.g Eutrema salsugineum HOM05D006440 ORTHO05D003987 1.3e-223 780.0 595 63.5
FAN12G1575 Fragaria x ananassa HOM05D006440 ORTHO05D003987 1.4e-222 776.5 595 64.7
Oeu025570.2 Olea europaea HOM05D006440 ORTHO05D000397 1.8e-222 776.2 534 70.6
AUR62015479 Chenopodium quinoa HOM05D006440 ORTHO05D003987 3.1e-222 775.4 599 64.3
CDE06G0279 Ceratophyllum demersum HOM05D006440 ORTHO05D003987 2.0e-221 772.7 599 65.9
FAN22G0224 Fragaria x ananassa HOM05D006440 ORTHO05D003987 2.7e-221 772.3 595 64.7
Lsat_1_v5_gn_3_121341 Lactuca sativa HOM05D006440 ORTHO05D003987 7.2e-219 764.2 596 63.9
BcaB07g30569 Brassica carinata HOM05D006440 ORTHO05D003987 1.0e-217 760.4 594 62.1
Ah.07g207430 Amaranthus hybridus HOM05D006440 ORTHO05D003987 1.7e-215 753.1 574 65.2
Aa31LG5G3660 Aethionema arabicum HOM05D006440 ORTHO05D003987 8.3e-215 750.7 593 61.9
AL8G16820 Arabidopsis lyrata HOM05D006440 ORTHO05D003987 8.3e-215 750.7 592 62.2
Manes.15G038500 Manihot esculenta HOM05D006440 ORTHO05D003987 7.0e-214 747.7 585 64.8
Solyc09g089660.4 Solanum lycopersicum HOM05D006440 ORTHO05D003987 2.0e-213 746.1 546 66.8
Haze_11338 Corylus avellana HOM05D006440 ORTHO05D003987 5.0e-212 741.5 652 59.4
Sc25g0004030 Simmondsia chinensis HOM05D006440 ORTHO05D003987 1.1e-211 740.3 530 67.2
AT5G43500 Arabidopsis thaliana HOM05D006440 ORTHO05D003987 7.2e-211 737.6 593 61.0
Thecc.04G250600 Theobroma cacao HOM05D006440 ORTHO05D003987 9.5e-211 737.3 592 64.0
C02p44000 Brassica napus HOM05D006440 ORTHO05D003987 1.2e-210 736.9 594 60.3
BraA02t07826Z Brassica rapa HOM05D006440 ORTHO05D003987 6.1e-210 734.6 595 60.0
BcaC03g16584 Brassica carinata HOM05D006440 ORTHO05D003987 8.0e-210 734.2 596 60.2
BolC2t10447H Brassica oleracea HOM05D006440 ORTHO05D003987 1.0e-209 733.8 594 60.3
Actinidia04464 Actinidia chinensis HOM05D006440 ORTHO05D003987 2.3e-209 732.6 518 68.9
A02p27870 Brassica napus HOM05D006440 ORTHO05D003987 2.3e-209 732.6 594 59.9
AUR62002263 Chenopodium quinoa HOM05D006440 ORTHO05D003987 2.0e-208 729.6 686 55.5
Lj6A660T45 Lonicera japonica HOM05D006440 ORTHO05D003987 1.3e-207 726.9 608 62.5
unitig_748.g7321 Utricularia gibba HOM05D006440 ORTHO05D003987 7.0e-206 721.1 614 60.1
ATR0680G034 Amborella trichopoda HOM05D006440 ORTHO05D003987 3.5e-205 718.8 572 64.0
Nitab4.5_0008345g0020 Nicotiana tabacum HOM05D006440 ORTHO05D003987 2.9e-204 715.7 514 68.3
Os04g0177600 Oryza sativa ssp. japonica HOM05D006440 ORTHO05D003987 1.9e-203 713.0 598 57.9
Peaxi162Scf00024g01821 Petunia axillaris HOM05D006440 ORTHO05D003987 2.1e-202 709.5 528 65.7
Carub.0008s0511 Capsella rubella HOM05D006440 ORTHO05D003987 7.5e-200 701.0 555 61.6
CARHR180120 Cardamine hirsuta HOM05D006440 ORTHO05D003987 6.4e-199 698.0 595 58.7
Psat2g067040 Pisum sativum HOM05D006440 ORTHO05D003987 2.6e-184 649.4 379 81.5
Nitab4.5_0000342g0190 Nicotiana tabacum HOM05D006440 ORTHO05D003987 7.9e-157 558.1 530 55.3
HPP92_008424 Vanilla planifolia HOM05D006440 ORTHO05D003987 3.4e-136 489.6 390 62.6
Pp3c3_14850 Physcomitrium patens HOM05D006440 ORTHO05D003987 6.5e-135 485.3 611 45.3
Mapoly0028s0034 Marchantia polymorpha HOM05D006440 ORTHO05D003987 1.7e-122 444.1 444 51.6
SMO117G0008 Selaginella moellendorffii HOM05D006440 ORTHO05D003987 1.1e-118 431.4 598 41.0
MD16G1213700 Malus domestica HOM05D006440 ORTHO05D003987 2.8e-114 416.8 527 46.7
PGSC0003DMG400017256 Solanum tuberosum HOM05D006440 ORTHO05D003987 1.2e-99 368.2 245 71.0
Cpa.g.sc44.85 Carica papaya HOM05D006440 ORTHO05D003987 1.7e-87 327.8 204 77.0
Zm00001eb087470 Zea mays HOM05D006440 ORTHO05D003987 2.2e-82 310.8 286 54.2
Zm00001eb087460 Zea mays HOM05D006440 ORTHO05D003987 3.6e-77 293.5 248 55.6
CBR_g37544 Chara braunii HOM05D000019 ORTHO05D000002 1.1e-70 271.9 617 32.9
HPP92_027995 Vanilla planifolia HOM05D006440 ORTHO05D003987 2.6e-59 234.2 167 63.5
HanXRQChr13g0422471 Helianthus annuus HOM05D006440 ORTHO05D003987 7.9e-40 169.5 155 58.7
HPP92_008423 Vanilla planifolia HOM05D006440 ORTHO05D003987 1.1e-36 159.1 141 57.4
SEGI_34555 Sequoiadendron giganteum HOM05D006440 ORTHO05D003987 6.5e-34 149.8 136 53.7
HanXRQChr13g0422461 Helianthus annuus HOM05D006440 ORTHO05D003987 2.5e-30 137.9 81 77.8
Dinv44661 Davidia involucrata HOM05D006440 ORTHO05D003987 1.3e-26 125.6 106 61.3
Hma1.2p1_1716F.1_g299120 Hydrangea macrophylla HOM05D006440 ORTHO05D003987 1.8e-20 105.1 69 66.7
Cfa026271 Carpinus fangiana HOM05D006440 ORTHO05D003987 4.6e-16 90.5 309 25.2
SHI00689 Sapria himalayana HOM05D006440 ORTHO05D003987 3.3e-14 84.3 60 70.0
Nn5g28601 Nelumbo nucifera HOM05D006440 ORTHO05D003987 2.2e-13 81.6 55 60.0
SHI00694 Sapria himalayana HOM05D006440 ORTHO05D003987 6.3e-13 80.1 83 53.0
SHI00691 Sapria himalayana HOM05D000023 ORTHO05D000014 8.5e-10 69.7 41 75.6
SHI00693 Sapria himalayana HOM05D006440 ORTHO05D003987 1.9e-09 68.6 60 55.0
Lalb_Chr07g0195271 Lupinus albus HOM05D000173 ORTHO05D004400 3.2e-09 67.8 420 23.3
Potri.015G053100 Populus trichocarpa HOM05D000173 ORTHO05D004400 5.5e-09 67.0 380 23.4
Nn1g06280 Nelumbo nucifera HOM05D000173 ORTHO05D004400 7.2e-09 66.6 485 22.7
Haze_11337 Corylus avellana HOM05D006440 ORTHO05D003987 9.4e-09 66.2 33 93.9
Lj2g0020115 Lotus japonicus HOM05D000173 ORTHO05D004400 1.2e-08 65.9 417 23.7
Oeu024320.1 Olea europaea HOM05D000173 ORTHO05D004400 1.2e-08 65.9 380 24.5
CiPaw.15G127800 Carya illinoinensis HOM05D000173 ORTHO05D004400 3.6e-08 64.3 384 23.7
arahy.Tifrunner.gnm1.ann1.IPBD8F Arachis hypogaea HOM05D002333 ORTHO05D003987 6.1e-08 63.5 38 81.6
MD16G1213300 Malus domestica HOM05D006440 ORTHO05D003987 6.1e-08 63.5 44 61.4
Cpa.g.sc13.24 Carica papaya HOM05D000173 ORTHO05D004400 7.9e-08 63.2 465 21.9
Actinidia35080 Actinidia chinensis HOM05D000173 ORTHO05D004400 1.0e-07 62.8 360 23.9
Glyma.03G107300 Glycine max HOM05D000173 ORTHO05D004400 1.4e-07 62.4 490 21.6
MD11G1273400 Malus domestica HOM05D000173 ORTHO05D004400 1.4e-07 62.4 451 22.2
Oeu055898.1 Olea europaea HOM05D000173 ORTHO05D004400 1.4e-07 62.4 379 23.7
SMO347G0056 Selaginella moellendorffii HOM05D000173 ORTHO05D004400 1.4e-07 62.4 388 22.2
Prupe.4G154200 Prunus persica HOM05D000173 ORTHO05D004400 1.8e-07 62.0 450 22.2
Glyma.08G040300 Glycine max HOM05D000173 ORTHO05D004400 2.3e-07 61.6 379 24.8
Phvul.010G044300 Phaseolus vulgaris HOM05D000173 ORTHO05D004400 3.0e-07 61.2 360 23.9
PGR083G2056 Punica granatum HOM05D000173 ORTHO05D004400 3.0e-07 61.2 378 22.8
vmacro16454 Vaccinium macrocarpon HOM05D000173 ORTHO05D004400 3.0e-07 61.2 458 23.4
Eucgr.B00704 Eucalyptus grandis HOM05D000173 ORTHO05D004400 3.9e-07 60.8 489 22.1
MD03G1252000 Malus domestica HOM05D000173 ORTHO05D004400 3.9e-07 60.8 449 21.8
Rhsim12G0144100 Rhododendron simsii HOM05D000173 ORTHO05D004400 3.9e-07 60.8 389 23.7
VMungo0331G0580 Vigna mungo HOM05D000173 ORTHO05D004400 3.9e-07 60.8 449 22.9
Glyma.10G143650 Glycine max HOM05D006876 ORTHO05D008708 5.2e-07 60.5 35 80.0
Manes.01G012800 Manihot esculenta HOM05D000173 ORTHO05D004400 5.2e-07 60.5 379 23.7
Dinv40423 Davidia involucrata HOM05D000173 ORTHO05D004400 6.7e-07 60.1 451 22.8
Hund24237 Selenicereus undatus HOM05D000173 ORTHO05D004400 6.7e-07 60.1 381 22.3
arahy.Tifrunner.gnm1.ann1.SSG76K Arachis hypogaea HOM05D000173 ORTHO05D004400 8.8e-07 59.7 360 23.6
arahy.Tifrunner.gnm1.ann1.1T6SIZ Arachis hypogaea HOM05D000173 ORTHO05D004400 1.1e-06 59.3 360 23.6
PGR042G0409 Punica granatum HOM05D000173 ORTHO05D004400 2.0e-06 58.5 446 22.4
Atru.chr9.786 Acer truncatum HOM05D000173 ORTHO05D004400 2.6e-06 58.2 358 23.7
CSS0020862 Camellia sinensis var. sinensis HOM05D000173 ORTHO05D004400 3.3e-06 57.8 464 22.4


User provided reference genes

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