Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G021100 Phaseolus vulgaris HOM05D006866 ORTHO05D008689 1.9e-123 447.2 222 100.0
Lalb_Chr02g0143291 Lupinus albus HOM05D006866 ORTHO05D008689 1.6e-98 364.4 228 77.2
Ca_25672_v3 Cicer arietinum L. HOM05D006866 ORTHO05D008689 2.3e-89 334.0 214 73.8
VMungo0720G0148 Vigna mungo HOM05D006866 ORTHO05D008689 8.7e-89 332.0 174 93.1
Glyma.20G109800 Glycine max HOM05D006866 ORTHO05D008689 2.4e-86 323.9 174 89.7
ECA232G0121 Erigeron canadensis HOM05D006866 ORTHO05D008689 5.6e-80 302.8 211 68.7
Lj5g0008795 Lotus japonicus HOM05D006866 ORTHO05D008689 1.2e-77 295.0 176 78.4
AUR62006935 Chenopodium quinoa HOM05D006866 ORTHO05D008689 1.0e-76 292.0 221 60.6
arahy.Tifrunner.gnm1.ann1.X32MFV Arachis hypogaea HOM05D006866 ORTHO05D008689 1.7e-76 291.2 171 78.4
Medtr1g112240 Medicago truncatula HOM05D006866 ORTHO05D008689 2.9e-76 290.4 174 78.2
TPR.G2424 Trifolium pratense HOM05D006866 ORTHO05D008689 2.1e-74 284.3 174 77.0
Sp4g17360 Schrenkiella parvula HOM05D006866 ORTHO05D008689 1.5e-72 278.1 200 65.0
Thhalv10017758m.g Eutrema salsugineum HOM05D006866 ORTHO05D008689 2.5e-72 277.3 200 65.0
Aa31LG9G16090 Aethionema arabicum HOM05D006866 ORTHO05D008689 3.3e-72 276.9 200 64.5
Psat6g231320 Pisum sativum HOM05D006866 ORTHO05D008689 9.6e-72 275.4 175 72.6
Rhsim10G0148300 Rhododendron simsii HOM05D006367 ORTHO05D007942 2.1e-71 274.2 204 66.2
BcaB02g09476 Brassica carinata HOM05D006866 ORTHO05D008689 3.7e-71 273.5 212 59.9
TPR.G2448 Trifolium pratense HOM05D006866 ORTHO05D008689 6.2e-71 272.7 205 65.9
AL4G31140 Arabidopsis lyrata HOM05D006866 ORTHO05D008689 8.2e-71 272.3 208 60.6
C04p13710 Brassica napus HOM05D006866 ORTHO05D008689 1.8e-70 271.2 212 59.9
A05p10610 Brassica napus HOM05D006866 ORTHO05D008689 3.1e-70 270.4 212 59.4
Carub.0004s1681 Capsella rubella HOM05D006866 ORTHO05D008689 6.9e-70 269.2 204 60.8
AT2G35130 Arabidopsis thaliana HOM05D006866 ORTHO05D008689 2.6e-69 267.3 211 59.2
BolC4t22960H Brassica oleracea HOM05D006866 ORTHO05D008689 1.3e-68 265.0 220 57.7
HanXRQChr09g0258331 Helianthus annuus HOM05D006866 ORTHO05D008689 1.3e-68 265.0 198 64.1
THA.LOC104814359 Tarenaya hassleriana HOM05D006866 ORTHO05D008689 1.3e-68 265.0 206 59.2
BraA05t20001Z Brassica rapa HOM05D006866 ORTHO05D008689 1.4e-67 261.5 222 56.8
Actinidia22399 Actinidia chinensis HOM05D006866 ORTHO05D008689 9.3e-67 258.8 173 69.9
Dinv01379 Davidia involucrata HOM05D006866 ORTHO05D008689 4.6e-66 256.5 169 71.0
CARHR129270 Cardamine hirsuta HOM05D006866 ORTHO05D008689 5.1e-65 253.1 181 64.1
CSS0001165 Camellia sinensis var. sinensis HOM05D006866 ORTHO05D008689 6.7e-65 252.7 169 71.6
COL.COLO4_30996 Corchorus olitorius HOM05D006866 ORTHO05D008689 1.9e-64 251.1 171 66.7
MD10G1231700 Malus domestica HOM05D006866 ORTHO05D008689 3.3e-64 250.4 173 67.6
Haze_06061 Corylus avellana HOM05D006866 ORTHO05D008689 7.4e-64 249.2 198 60.1
Thecc.06G143300 Theobroma cacao HOM05D006866 ORTHO05D008689 1.6e-63 248.1 169 68.0
EL10Ac4g09707 Beta vulgaris HOM05D006866 ORTHO05D008689 4.8e-63 246.5 170 67.6
Duzib160G0228 Durio zibethinus HOM05D006866 ORTHO05D008689 4.8e-63 246.5 168 67.3
FAN21G0631 Fragaria x ananassa HOM05D006866 ORTHO05D008689 8.2e-63 245.7 175 67.4
Gohir.A10G044500 Gossypium hirsutum HOM05D006866 ORTHO05D008689 1.1e-62 245.4 171 65.5
TAR626G0654 Trochodendron aralioides HOM05D006866 ORTHO05D008689 1.1e-62 245.4 174 63.8
EL10Ac8g19312 Beta vulgaris HOM05D006866 ORTHO05D008689 1.4e-62 245.0 217 57.1
GSVIVG01012065001 Vitis vinifera HOM05D006866 ORTHO05D008689 1.4e-62 245.0 172 67.4
FvH4_3g12360 Fragaria vesca HOM05D006866 ORTHO05D008689 1.8e-62 244.6 175 67.4
Gorai.011G048600 Gossypium raimondii HOM05D006866 ORTHO05D008689 2.4e-62 244.2 171 64.9
Nitab4.5_0001288g0160 Nicotiana tabacum HOM05D006866 ORTHO05D008689 3.1e-62 243.8 178 66.3
CSS0037136 Camellia sinensis var. sinensis HOM05D006866 ORTHO05D008689 4.1e-62 243.4 169 69.8
Oeu060351.1 Olea europaea HOM05D006866 ORTHO05D008689 4.1e-62 243.4 160 69.4
Gohir.D10G045700 Gossypium hirsutum HOM05D006866 ORTHO05D008689 6.9e-62 242.7 171 64.3
AUR62006933 Chenopodium quinoa HOM05D006866 ORTHO05D008689 9.0e-62 242.3 186 59.1
Prupe.4G112600 Prunus persica HOM05D006866 ORTHO05D008689 1.5e-61 241.5 170 67.6
TWI38G1826 Tripterygium wilfordii HOM05D006866 ORTHO05D008689 2.0e-61 241.1 171 66.7
Peaxi162Scf00149g00318 Petunia axillaris HOM05D006866 ORTHO05D008689 3.4e-61 240.4 172 66.9
CANSAT35G0964 Cannabis sativa HOM05D006866 ORTHO05D008689 4.5e-61 240.0 174 66.7
CAN.G149.30 Capsicum annuum HOM05D006866 ORTHO05D008689 4.5e-61 240.0 171 65.5
arahy.Tifrunner.gnm1.ann1.0F554D Arachis hypogaea HOM05D006866 ORTHO05D008689 7.7e-61 239.2 171 67.3
DCAR_001319 Daucus carota HOM05D006866 ORTHO05D008689 5.0e-60 236.5 167 66.5
Solyc02g068760.4 Solanum lycopersicum HOM05D006866 ORTHO05D008689 5.0e-60 236.5 171 64.3
CiPaw.10G064300 Carya illinoinensis HOM05D006866 ORTHO05D008689 6.5e-60 236.1 168 64.9
Migut.M01983 Erythranthe guttata HOM05D006866 ORTHO05D008689 6.5e-60 236.1 170 66.5
Sopen02g017930 Solanum pennellii HOM05D006866 ORTHO05D008689 6.5e-60 236.1 171 64.3
RcHm_v2.0_Chr5g0020151 Rosa chinensis HOM05D006866 ORTHO05D008689 8.5e-60 235.7 171 66.7
FAN25G0624 Fragaria x ananassa HOM05D006866 ORTHO05D008689 7.2e-59 232.6 174 66.7
Cfa000706 Carpinus fangiana HOM05D006866 ORTHO05D008689 1.2e-58 231.9 168 63.7
PGSC0003DMG400010422 Solanum tuberosum HOM05D006866 ORTHO05D008689 1.6e-58 231.5 171 63.2
ClCG01G009530 Citrullus lanatus HOM05D006866 ORTHO05D008689 2.7e-58 230.7 173 62.4
Sabra12G0093800 Salix brachista HOM05D006866 ORTHO05D008689 7.9e-58 229.2 170 61.8
Potri.012G123600 Populus trichocarpa HOM05D006866 ORTHO05D008689 1.4e-57 228.4 170 61.8
Cc09_g06040 Coffea canephora HOM05D006866 ORTHO05D008689 3.9e-57 226.9 160 64.4
CsaV3_1G046260 Cucumis sativus L. HOM05D006866 ORTHO05D008689 3.9e-57 226.9 169 61.5
Eucgr.D00981 Eucalyptus grandis HOM05D006866 ORTHO05D008689 1.1e-56 225.3 175 62.9
Nn7g38175 Nelumbo nucifera HOM05D006866 ORTHO05D008689 1.1e-56 225.3 171 57.3
Aqoxy1G01457 Aquilegia oxysepala HOM05D006866 ORTHO05D008689 2.5e-56 224.2 164 60.4
Lj2A350T60 Lonicera japonica HOM05D006866 ORTHO05D008689 2.5e-56 224.2 223 53.4
Sabra12G0093100 Salix brachista HOM05D006866 ORTHO05D008689 4.3e-56 223.4 163 62.0
MELO3C021744.2 Cucumis melo HOM05D006866 ORTHO05D008689 7.4e-56 222.6 163 62.6
vmacro03523 Vaccinium macrocarpon HOM05D006866 ORTHO05D008689 9.7e-56 222.2 197 58.9
Sed0016966 Sechium edule HOM05D006866 ORTHO05D003855 4.8e-55 219.9 173 59.5
MBI18_g11481_MAGBIO Magnolia biondii HOM05D006866 ORTHO05D008689 4.1e-54 216.9 164 60.4
Nitab4.5_0007533g0010 Nicotiana tabacum HOM05D006866 ORTHO05D008689 2.0e-53 214.5 167 64.1
ATR0763G194 Amborella trichopoda HOM05D006866 ORTHO05D008689 2.9e-52 210.7 153 63.4
Zm00001eb233080 Zea mays HOM05D006866 ORTHO05D008689 3.8e-52 210.3 154 60.4
QL11p016582 Quercus lobata HOM05D006866 ORTHO05D008689 5.0e-52 209.9 142 68.3
PSO675G2302 Papaver somniferum HOM05D006866 ORTHO05D008689 7.2e-51 206.1 161 57.8
PSO541G3299 Papaver somniferum HOM05D006866 ORTHO05D008689 2.1e-50 204.5 161 57.8
Cpa.g.sc135.7 Carica papaya HOM05D006866 ORTHO05D008689 2.6e-48 197.6 144 66.7
CDE01G0264 Ceratophyllum demersum HOM05D006866 ORTHO05D008689 1.3e-47 195.3 149 59.7
Sabra12G0093000 Salix brachista HOM05D000009 ORTHO05D000008 6.3e-47 193.0 180 53.3
Lsat_1_v5_gn_8_117320 Lactuca sativa HOM05D006866 ORTHO05D008689 4.1e-46 190.3 136 65.4
AUR62000579 Chenopodium quinoa HOM05D006866 ORTHO05D008689 6.5e-44 183.0 186 50.5
PGR004G0545 Punica granatum HOM05D006866 ORTHO05D008689 8.8e-41 172.6 174 50.0
CSS0019706 Camellia sinensis var. sinensis HOM05D006866 ORTHO05D008689 5.0e-36 156.8 100 73.0
HanXRQChr10g0279011 Helianthus annuus HOM05D006866 ORTHO05D008689 1.5e-32 145.2 106 63.2
Os02g0170000 Oryza sativa ssp. japonica HOM05D006866 ORTHO05D008689 1.3e-31 142.1 102 63.7
Lsat_1_v5_gn_6_52341 Lactuca sativa HOM05D006866 ORTHO05D008689 2.7e-29 134.4 123 56.9
Sabra12G0092900 Salix brachista HOM05D000009 ORTHO05D000008 2.0e-24 118.2 137 44.5
Manes.13G080558 Manihot esculenta HOM05D006866 ORTHO05D008689 7.5e-24 116.3 77 67.5
CAN.G27.8 Capsicum annuum HOM05D006866 ORTHO05D008689 7.0e-22 109.8 97 55.7
SMO165G0132 Selaginella moellendorffii HOM05D006866 ORTHO05D008689 4.5e-21 107.1 131 35.9
AagrBONN_evm.TU.Sc2ySwM_368.1444 Anthoceros agrestis HOM05D006866 ORTHO05D008689 1.2e-18 99.0 128 35.9
Mapoly0002s0014 Marchantia polymorpha HOM05D006866 ORTHO05D008689 2.1e-18 98.2 136 35.3
Pp3c6_26210 Physcomitrium patens HOM05D006866 ORTHO05D008689 2.1e-18 98.2 169 33.7
RhsimUnG0235100 Rhododendron simsii HOM05D006866 ORTHO05D008689 3.0e-17 94.4 102 48.0
CAN.G1114.2 Capsicum annuum HOM05D006866 ORTHO05D008689 6.8e-17 93.2 71 59.2
Pp3c16_5890 Physcomitrium patens HOM05D006866 ORTHO05D008689 5.7e-16 90.1 131 35.9
Haze_06053 Corylus avellana HOM05D006866 ORTHO05D008689 9.8e-16 89.4 131 40.5
Cfa002018 Carpinus fangiana HOM05D000082 ORTHO05D000038 9.2e-14 82.8 65 64.6
Ciclev10015335m.g Citrus clementina HOM05D006866 ORTHO05D008689 2.0e-13 81.6 45 80.0
CSS0001056 Camellia sinensis var. sinensis HOM05D006866 ORTHO05D008689 2.7e-13 81.3 46 82.6
CSS0048441 Camellia sinensis var. sinensis HOM05D006866 ORTHO05D008689 2.7e-13 81.3 46 82.6
Lsat_1_v5_gn_3_50301 Lactuca sativa HOM05D006866 ORTHO05D008689 1.1e-11 75.9 52 63.5
Lsat_1_v5_gn_8_128381 Lactuca sativa HOM05D006866 ORTHO05D008689 1.5e-11 75.5 54 63.0
MD05G1251100 Malus domestica HOM05D006866 ORTHO05D008689 2.1e-10 71.6 46 73.9
Lj5g0020884 Lotus japonicus HOM05D000132 ORTHO05D000058 8.0e-10 69.7 38 89.5
EL10Ac8g19311 Beta vulgaris HOM05D006866 ORTHO05D008689 1.4e-09 68.9 41 73.2
Cfa014560 Carpinus fangiana HOM05D002479 ORTHO05D002675 1.4e-09 68.9 179 26.3
Haze_13105 Corylus avellana HOM05D002479 ORTHO05D002675 1.4e-09 68.9 179 25.7
MD01G1235800 Malus domestica HOM05D006877 ORTHO05D008735 1.4e-09 68.9 113 31.9
Haze_06062 Corylus avellana HOM05D006866 ORTHO05D008689 5.2e-09 67.0 42 71.4
FAN03G2267 Fragaria x ananassa HOM05D006877 ORTHO05D008735 6.8e-09 66.6 115 31.3
RcHm_v2.0_Chr1g0384191 Rosa chinensis HOM05D006877 ORTHO05D008735 2.0e-08 65.1 113 30.1
HanXRQChr15g0480341 Helianthus annuus HOM05D002479 ORTHO05D002675 2.6e-08 64.7 149 24.2
Hma1.2p1_0758F.1_g213710 Hydrangea macrophylla HOM05D006877 ORTHO05D008735 3.4e-08 64.3 109 30.3
Nn2g14806 Nelumbo nucifera HOM05D002479 ORTHO05D002675 9.8e-08 62.8 113 28.3
Prupe.2G325900 Prunus persica HOM05D006877 ORTHO05D008735 9.8e-08 62.8 113 29.2
EL10Ac3g05079 Beta vulgaris HOM05D006877 ORTHO05D008735 1.3e-07 62.4 113 29.2
arahy.Tifrunner.gnm1.ann1.G9QUK2 Arachis hypogaea HOM05D006877 ORTHO05D008735 1.7e-07 62.0 113 28.3
arahy.Tifrunner.gnm1.ann1.VTBJ7F Arachis hypogaea HOM05D006877 ORTHO05D008735 1.7e-07 62.0 113 28.3
Migut.H01034 Erythranthe guttata HOM05D002479 ORTHO05D002675 2.2e-07 61.6 119 27.7
Potri.019G049400 Populus trichocarpa HOM05D006877 ORTHO05D008735 2.2e-07 61.6 113 30.1
QL08p037589 Quercus lobata HOM05D002479 ORTHO05D002675 2.2e-07 61.6 178 23.6
SGA_v2.0_scaffold117G32408 Striga asiatica HOM05D002479 ORTHO05D002675 2.9e-07 61.2 130 27.7
CARHR141110 Cardamine hirsuta HOM05D006866 ORTHO05D008689 3.7e-07 60.8 45 57.8
Lsat_1_v5_gn_3_39301 Lactuca sativa HOM05D002479 ORTHO05D002675 3.7e-07 60.8 113 25.7
Ah.04g156540 Amaranthus hybridus HOM05D006877 ORTHO05D008735 4.9e-07 60.5 113 29.2
Oeu043369.1 Olea europaea HOM05D002479 ORTHO05D002675 4.9e-07 60.5 128 25.8
Prupe.3G233300 Prunus persica HOM05D002479 ORTHO05D002675 4.9e-07 60.5 113 24.8
TAR381G0744 Trochodendron aralioides HOM05D006877 ORTHO05D008735 4.9e-07 60.5 113 29.2
Ah.01g005230 Amaranthus hybridus HOM05D002479 ORTHO05D002675 6.4e-07 60.1 119 26.9
MSTRG.14189 Avicennia marina HOM05D002479 ORTHO05D002675 6.4e-07 60.1 119 26.1
CARHR180830 Cardamine hirsuta HOM05D006866 ORTHO05D008689 6.4e-07 60.1 50 50.0
AUR62002061 Chenopodium quinoa HOM05D006877 ORTHO05D008735 6.4e-07 60.1 113 28.3
AUR62028175 Chenopodium quinoa HOM05D006877 ORTHO05D008735 6.4e-07 60.1 113 28.3
ClCG08G000450 Citrullus lanatus HOM05D002479 ORTHO05D002675 6.4e-07 60.1 113 27.4
Dinv17258 Davidia involucrata HOM05D006877 ORTHO05D008735 6.4e-07 60.1 109 28.4
MBI04_g20982_MAGBIO Magnolia biondii HOM05D006877 ORTHO05D008735 6.4e-07 60.1 113 27.4
Rhsim09G0212700 Rhododendron simsii HOM05D006877 ORTHO05D008735 6.4e-07 60.1 113 27.4
SalBow1G6410 Salvia bowleyana HOM05D002479 ORTHO05D002675 6.4e-07 60.1 148 25.7
Ca_18009_v3 Cicer arietinum L. HOM05D006877 ORTHO05D008735 1.1e-06 59.3 113 26.5
Dinv01391 Davidia involucrata HOM05D002479 ORTHO05D002675 1.4e-06 58.9 109 24.8
CSS0011113 Camellia sinensis var. sinensis HOM05D006877 ORTHO05D008735 1.9e-06 58.5 105 29.5
AUR62037373 Chenopodium quinoa HOM05D002479 ORTHO05D002675 1.9e-06 58.5 85 29.4
MELO3C033525.2 Cucumis melo HOM05D002479 ORTHO05D002675 1.9e-06 58.5 113 26.5
Lalb_Chr13g0294611 Lupinus albus HOM05D006877 ORTHO05D008735 1.9e-06 58.5 113 26.5
Manes.09G127200 Manihot esculenta HOM05D006877 ORTHO05D008735 1.9e-06 58.5 101 29.7
CsaV3_5G040330 Cucumis sativus L. HOM05D002479 ORTHO05D002675 2.4e-06 58.2 113 26.5
ECA246G2862 Erigeron canadensis HOM05D006877 ORTHO05D008735 2.4e-06 58.2 109 29.4
MD09G1091700 Malus domestica HOM05D002479 ORTHO05D002675 2.4e-06 58.2 113 23.9
Sabra19G0059000 Salix brachista HOM05D006877 ORTHO05D008735 2.4e-06 58.2 113 29.2
Actinidia18704 Actinidia chinensis HOM05D006877 ORTHO05D008735 3.2e-06 57.8 109 28.4
Glyma.08G106500 Glycine max HOM05D006877 ORTHO05D008735 3.2e-06 57.8 111 27.0
Lj8P116T32 Lonicera japonica HOM05D002479 ORTHO05D002675 3.2e-06 57.8 107 28.0
LjContig00141g0004174 Lotus japonicus HOM05D002479 ORTHO05D002675 3.2e-06 57.8 85 25.9
MBI02_g29389_MAGBIO Magnolia biondii HOM05D002479 ORTHO05D002675 3.2e-06 57.8 128 25.8
Nitab4.5_0009520g0020 Nicotiana tabacum HOM05D002479 ORTHO05D002675 3.2e-06 57.8 113 24.8
Sc25g0001210 Simmondsia chinensis HOM05D006877 ORTHO05D008735 3.2e-06 57.8 113 27.4
TAR626G0455 Trochodendron aralioides HOM05D002479 ORTHO05D002675 3.2e-06 57.8 113 25.7
GSVIVG01024409001 Vitis vinifera HOM05D006877 ORTHO05D008735 3.2e-06 57.8 113 27.4
ATR0829G170 Amborella trichopoda HOM05D006877 ORTHO05D008735 4.1e-06 57.4 113 25.7
ECA246G4149 Erigeron canadensis HOM05D002479 ORTHO05D002675 4.1e-06 57.4 149 23.5
PSO210G1488 Papaver somniferum HOM05D002479 ORTHO05D002675 4.1e-06 57.4 83 28.9
Ciclev10017547m.g Citrus clementina HOM05D002479 ORTHO05D002675 5.4e-06 57.0 113 24.8
Lalb_Chr15g0088581 Lupinus albus HOM05D002479 ORTHO05D002675 5.4e-06 57.0 108 24.1
Nn1g02530 Nelumbo nucifera HOM05D002479 ORTHO05D002675 5.4e-06 57.0 191 25.7
Nitab4.5_0000021g0490 Nicotiana tabacum HOM05D006877 ORTHO05D008735 5.4e-06 57.0 66 39.4
Nitab4.5_0011357g0010 Nicotiana tabacum HOM05D006877 ORTHO05D008735 5.4e-06 57.0 66 39.4
Psat7g076160 Pisum sativum HOM05D006877 ORTHO05D008735 5.4e-06 57.0 113 25.7
AL2G33510 Arabidopsis lyrata HOM05D002479 ORTHO05D002675 7.0e-06 56.6 83 28.9
Peaxi162Scf00007g00285 Petunia axillaris HOM05D002479 ORTHO05D002675 7.0e-06 56.6 115 23.5
VMungo0251G1190 Vigna mungo HOM05D006877 ORTHO05D008735 7.0e-06 56.6 113 26.5
CANSAT64G1102 Cannabis sativa HOM05D002479 ORTHO05D002675 9.2e-06 56.2 112 24.1
CARHR185880 Cardamine hirsuta HOM05D006877 ORTHO05D008735 9.2e-06 56.2 113 27.4
Nitab4.5_0027477g0010 Nicotiana tabacum HOM05D002479 ORTHO05D002675 9.2e-06 56.2 113 23.9


User provided reference genes

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