Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G009900 Phaseolus vulgaris HOM05D003818 ORTHO05D004541 1.4e-72 276.2 142 100.0
VMungo0720G0479 Vigna mungo HOM05D001872 ORTHO05D001859 4.8e-68 261.2 140 95.7
Glyma.20G155900 Glycine max HOM05D003818 ORTHO05D004541 1.8e-67 259.2 140 93.6
Glyma.10G238600 Glycine max HOM05D003818 ORTHO05D004541 2.4e-67 258.8 140 92.9
Phvul.007G066800 Phaseolus vulgaris HOM05D003818 ORTHO05D004541 4.5e-66 254.6 140 92.9
VMungo0720G0599 Vigna mungo HOM05D003818 ORTHO05D004541 1.0e-65 253.4 140 92.9
RcHm_v2.0_Chr6g0276321 Rosa chinensis HOM05D003818 ORTHO05D004541 4.2e-64 248.1 140 89.3
arahy.Tifrunner.gnm1.ann1.7N83Z4 Arachis hypogaea HOM05D003818 ORTHO05D004541 2.1e-63 245.7 141 87.9
arahy.Tifrunner.gnm1.ann1.Y3E72Q Arachis hypogaea HOM05D003818 ORTHO05D004541 2.1e-63 245.7 141 87.9
LjContig00564g0007738 Lotus japonicus HOM05D003818 ORTHO05D004541 2.1e-63 245.7 141 88.7
MD17G1234800 Malus domestica HOM05D003818 ORTHO05D004541 2.1e-63 245.7 142 87.3
Lj2g0002682 Lotus japonicus HOM05D003818 ORTHO05D004541 2.7e-63 245.4 142 88.0
Lalb_Chr21g0304961 Lupinus albus HOM05D003818 ORTHO05D004541 2.7e-63 245.4 141 88.7
FvH4_2g14180 Fragaria vesca HOM05D003818 ORTHO05D004541 3.5e-63 245.0 140 87.1
FAN24G1752 Fragaria x ananassa HOM05D003818 ORTHO05D004541 3.5e-63 245.0 140 87.1
Manes.06G144400 Manihot esculenta HOM05D003818 ORTHO05D004541 6.0e-63 244.2 141 87.9
FAN15G1651 Fragaria x ananassa HOM05D003818 ORTHO05D004541 1.0e-62 243.4 140 86.4
FAN27G0424 Fragaria x ananassa HOM05D003818 ORTHO05D004541 1.0e-62 243.4 140 86.4
Potri.012G136900 Populus trichocarpa HOM05D003818 ORTHO05D004541 1.5e-61 239.6 141 87.2
Potri.015G138800 Populus trichocarpa HOM05D003818 ORTHO05D004541 1.9e-61 239.2 141 86.5
Prupe.3G134400 Prunus persica HOM05D003818 ORTHO05D004541 1.9e-61 239.2 142 85.2
Sabra15G0149800 Salix brachista HOM05D003818 ORTHO05D004541 1.9e-61 239.2 141 86.5
Manes.14G028600 Manihot esculenta HOM05D003818 ORTHO05D004541 2.5e-61 238.8 141 86.5
Psat3g070640 Pisum sativum HOM05D003818 ORTHO05D004541 3.3e-61 238.4 143 85.3
Eucgr.H00421 Eucalyptus grandis HOM05D003818 ORTHO05D004541 5.7e-61 237.7 140 87.9
Nn3g21139 Nelumbo nucifera HOM05D003818 ORTHO05D004541 7.4e-61 237.3 142 85.9
QL06p049138 Quercus lobata HOM05D003818 ORTHO05D004541 9.7e-61 236.9 140 86.4
Cpa.g.sc370.10 Carica papaya HOM05D003818 ORTHO05D004541 1.6e-60 236.1 141 86.5
GSVIVG01010613001 Vitis vinifera HOM05D003818 ORTHO05D004541 1.6e-60 236.1 140 85.7
TPR.G3844 Trifolium pratense HOM05D003818 ORTHO05D004541 2.1e-60 235.7 141 85.1
GSVIVG01020800001 Vitis vinifera HOM05D003818 ORTHO05D004541 2.1e-60 235.7 140 87.1
CiPaw.04G066900 Carya illinoinensis HOM05D003818 ORTHO05D004541 2.8e-60 235.3 140 85.0
Medtr0019s0160 Medicago truncatula HOM05D003818 ORTHO05D004541 4.8e-60 234.6 142 83.8
MD12G1011200 Malus domestica HOM05D003818 ORTHO05D004541 6.3e-60 234.2 143 85.3
TAR374G0305 Trochodendron aralioides HOM05D003818 ORTHO05D004541 6.3e-60 234.2 142 84.5
CsaV3_3G016860 Cucumis sativus L. HOM05D003818 ORTHO05D004541 1.4e-59 233.0 141 83.0
TWI39G1222 Tripterygium wilfordii HOM05D003818 ORTHO05D004541 1.8e-59 232.6 141 85.8
Sed0011620 Sechium edule HOM05D003818 ORTHO05D004541 2.4e-59 232.3 141 83.7
Haze_13747 Corylus avellana HOM05D003818 ORTHO05D004541 5.3e-59 231.1 131 89.3
TWI23G0179 Tripterygium wilfordii HOM05D003818 ORTHO05D004541 5.3e-59 231.1 141 83.7
Lalb_Chr06g0161031 Lupinus albus HOM05D003818 ORTHO05D004541 6.9e-59 230.7 141 85.1
Cfa020017 Carpinus fangiana HOM05D003818 ORTHO05D004541 1.2e-58 229.9 129 89.1
Medtr7g092450 Medicago truncatula HOM05D003818 ORTHO05D004541 1.2e-58 229.9 143 83.9
TAR375G1045 Trochodendron aralioides HOM05D003818 ORTHO05D004541 1.5e-58 229.6 141 83.7
Sabra12G0102700 Salix brachista HOM05D003818 ORTHO05D004541 2.6e-58 228.8 154 78.6
Sed0012084 Sechium edule HOM05D003818 ORTHO05D004541 2.6e-58 228.8 141 82.3
AT5G51940 Arabidopsis thaliana HOM05D003818 ORTHO05D004541 7.6e-58 227.3 142 83.1
Cfa008286 Carpinus fangiana HOM05D003818 ORTHO05D004541 7.6e-58 227.3 129 89.9
AL8G26260 Arabidopsis lyrata HOM05D003818 ORTHO05D004541 1.0e-57 226.9 142 81.7
CARHR264880 Cardamine hirsuta HOM05D003818 ORTHO05D004541 2.2e-57 225.7 142 81.0
MBI04_g00300_MAGBIO Magnolia biondii HOM05D003818 ORTHO05D004541 2.2e-57 225.7 142 84.5
Aa31LG9G1570 Aethionema arabicum HOM05D003818 ORTHO05D004541 2.9e-57 225.3 142 81.0
PGR102G2559 Punica granatum HOM05D003818 ORTHO05D004541 2.9e-57 225.3 142 81.0
AL3G42280 Arabidopsis lyrata HOM05D003818 ORTHO05D004541 3.8e-57 224.9 142 81.0
BcaB06g27416 Brassica carinata HOM05D003818 ORTHO05D004541 5.0e-57 224.6 142 80.3
Carub.0003s2626 Capsella rubella HOM05D003818 ORTHO05D004541 1.1e-56 223.4 142 81.0
Migut.K00399 Erythranthe guttata HOM05D003818 ORTHO05D004541 1.1e-56 223.4 142 82.4
Gohir.A11G009700 Gossypium hirsutum HOM05D003818 ORTHO05D004541 1.1e-56 223.4 142 83.1
Os03g0586600 Oryza sativa ssp. japonica HOM05D003818 ORTHO05D004541 1.1e-56 223.4 143 83.9
THA.LOC104818368 Tarenaya hassleriana HOM05D003818 ORTHO05D004541 1.1e-56 223.4 142 81.7
BcaB04g19460 Brassica carinata HOM05D003818 ORTHO05D004541 1.4e-56 223.0 142 81.7
Thhalv10005087m.g Eutrema salsugineum HOM05D003818 ORTHO05D004541 1.4e-56 223.0 142 81.7
Sp2g17150 Schrenkiella parvula HOM05D003818 ORTHO05D004541 1.4e-56 223.0 142 82.4
Atru.chr1.512 Acer truncatum HOM05D003818 ORTHO05D004541 1.9e-56 222.6 142 81.7
Duzib068G1062 Durio zibethinus HOM05D003818 ORTHO05D004541 1.9e-56 222.6 142 82.4
Dinv28474 Davidia involucrata HOM05D003818 ORTHO05D004541 2.5e-56 222.2 142 81.7
A04p12880 Brassica napus HOM05D003818 ORTHO05D004541 4.2e-56 221.5 142 79.6
Carub.0008s1203 Capsella rubella HOM05D003818 ORTHO05D004541 4.2e-56 221.5 142 80.3
Thhalv10027983m.g Eutrema salsugineum HOM05D003818 ORTHO05D004541 4.2e-56 221.5 142 78.9
Gohir.D11G009000 Gossypium hirsutum HOM05D003818 ORTHO05D004541 4.2e-56 221.5 142 82.4
Gorai.007G010600 Gossypium raimondii HOM05D003818 ORTHO05D004541 4.2e-56 221.5 142 82.4
BcaC04g23878 Brassica carinata HOM05D003818 ORTHO05D004541 5.5e-56 221.1 142 81.0
A09p03630 Brassica napus HOM05D003818 ORTHO05D004541 5.5e-56 221.1 142 81.0
C04p46580 Brassica napus HOM05D003818 ORTHO05D004541 5.5e-56 221.1 142 79.6
C09p03860 Brassica napus HOM05D003818 ORTHO05D004541 5.5e-56 221.1 142 81.0
BolC9t53311H Brassica oleracea HOM05D003818 ORTHO05D004541 5.5e-56 221.1 142 81.0
BraA04t16951Z Brassica rapa HOM05D003818 ORTHO05D004541 5.5e-56 221.1 142 79.6
BraA09t36001Z Brassica rapa HOM05D003818 ORTHO05D004541 5.5e-56 221.1 142 81.0
Sp7g01990 Schrenkiella parvula HOM05D003818 ORTHO05D004541 5.5e-56 221.1 142 79.6
ATR0757G129 Amborella trichopoda HOM05D003818 ORTHO05D004541 9.3e-56 220.3 144 81.9
HanXRQChr16g0532841 Helianthus annuus HOM05D003818 ORTHO05D004541 9.3e-56 220.3 143 83.2
BolC4t26244H Brassica oleracea HOM05D003818 ORTHO05D004541 1.6e-55 219.5 142 78.9
Os07g0463100 Oryza sativa ssp. japonica HOM05D003818 ORTHO05D004541 2.1e-55 219.2 140 80.7
AT2G04630 Arabidopsis thaliana HOM05D003818 ORTHO05D004541 2.7e-55 218.8 142 80.3
MBI07_g30196_MAGBIO Magnolia biondii HOM05D003818 ORTHO05D004541 3.6e-55 218.4 141 82.3
THA.LOC104819386 Tarenaya hassleriana HOM05D003818 ORTHO05D004541 4.6e-55 218.0 143 79.0
SGA_v2.0_scaffold59G20747 Striga asiatica HOM05D003818 ORTHO05D004541 7.9e-55 217.2 141 80.1
MELO3C006881.2 Cucumis melo HOM05D003818 ORTHO05D004541 1.0e-54 216.9 129 84.5
Oeu061636.1 Olea europaea HOM05D003818 ORTHO05D004541 2.3e-54 215.7 142 81.7
Rhsim05G0017100 Rhododendron simsii HOM05D003818 ORTHO05D004541 3.0e-54 215.3 142 79.6
MSTRG.27132 Avicennia marina HOM05D003818 ORTHO05D004541 3.9e-54 214.9 142 79.6
Rhsim03G0177700 Rhododendron simsii HOM05D003818 ORTHO05D004541 5.1e-54 214.5 142 79.6
AUR62004298 Chenopodium quinoa HOM05D003818 ORTHO05D004541 6.7e-54 214.2 140 78.6
ClCG05G016800 Citrullus lanatus HOM05D002695 ORTHO05D002964 6.7e-54 214.2 129 83.7
Cc02_g03330 Coffea canephora HOM05D003818 ORTHO05D004541 6.7e-54 214.2 140 79.3
EL10Ac1g00990 Beta vulgaris HOM05D003818 ORTHO05D004541 8.7e-54 213.8 140 77.1
Lsat_1_v5_gn_1_9221 Lactuca sativa HOM05D003818 ORTHO05D004541 8.7e-54 213.8 143 79.0
Dinv35185 Davidia involucrata HOM05D003818 ORTHO05D004541 1.1e-53 213.4 142 78.9
Zm00001eb219520 Zea mays HOM05D003818 ORTHO05D004541 1.1e-53 213.4 142 81.0
Actinidia31809 Actinidia chinensis HOM05D003818 ORTHO05D004541 1.5e-53 213.0 144 79.2
AUR62022747 Chenopodium quinoa HOM05D003818 ORTHO05D004541 1.5e-53 213.0 140 77.9
HanXRQChr04g0108631 Helianthus annuus HOM05D003818 ORTHO05D004541 1.5e-53 213.0 143 79.0
CsaV3_3G046320 Cucumis sativus L. HOM05D003818 ORTHO05D004541 3.3e-53 211.8 140 79.3
PGSC0003DMG400008922 Solanum tuberosum HOM05D003818 ORTHO05D004541 4.3e-53 211.5 143 79.0
Thecc.03G171400 Theobroma cacao HOM05D003818 ORTHO05D004541 4.3e-53 211.5 141 79.4
Haze_20202 Corylus avellana HOM05D003818 ORTHO05D004541 5.7e-53 211.1 120 87.5
Solyc09g010500.3 Solanum lycopersicum HOM05D003818 ORTHO05D004541 1.3e-52 209.9 143 77.6
Sopen09g005230 Solanum pennellii HOM05D003818 ORTHO05D004541 1.3e-52 209.9 143 77.6
Duzib084G1211 Durio zibethinus HOM05D003818 ORTHO05D004541 1.6e-52 209.5 142 80.3
Gorai.004G121300 Gossypium raimondii HOM05D003818 ORTHO05D004541 3.7e-52 208.4 142 79.6
COL.COLO4_14270 Corchorus olitorius HOM05D003818 ORTHO05D004541 8.2e-52 207.2 127 82.7
Ciclev10006171m.g Citrus clementina HOM05D003818 ORTHO05D004541 1.4e-51 206.5 141 79.4
Gohir.A08G082700 Gossypium hirsutum HOM05D003818 ORTHO05D004541 1.8e-51 206.1 142 78.9
Gohir.D08G112900 Gossypium hirsutum HOM05D003818 ORTHO05D004541 1.8e-51 206.1 142 78.9
Hma1.2p1_0099F.1_g048510 Hydrangea macrophylla HOM05D003818 ORTHO05D004541 1.8e-51 206.1 142 77.5
Hund27319 Selenicereus undatus HOM05D003818 ORTHO05D004541 1.8e-51 206.1 140 76.4
Atru.chr3.2134 Acer truncatum HOM05D003818 ORTHO05D004541 3.1e-51 205.3 141 76.6
Nitab4.5_0017332g0010 Nicotiana tabacum HOM05D003818 ORTHO05D004541 3.1e-51 205.3 148 77.0
SEGI_10630 Sequoiadendron giganteum HOM05D003818 ORTHO05D004541 3.1e-51 205.3 145 77.9
MSTRG.26327 Avicennia marina HOM05D003818 ORTHO05D004541 1.5e-50 203.0 140 77.1
CSS0048006 Camellia sinensis var. sinensis HOM05D003818 ORTHO05D004541 2.0e-50 202.6 132 79.5
ClCG05G007860 Citrullus lanatus HOM05D003818 ORTHO05D004541 2.6e-50 202.2 200 58.5
DCAR_018174 Daucus carota HOM05D003818 ORTHO05D004541 4.5e-50 201.4 144 75.7
ECA247G1139 Erigeron canadensis HOM05D003818 ORTHO05D004541 1.7e-49 199.5 143 74.8
Aqoxy7G00432 Aquilegia oxysepala HOM05D003818 ORTHO05D004541 5.0e-49 198.0 142 76.8
SGA_v2.0_scaffold50G18457 Striga asiatica HOM05D003818 ORTHO05D004541 5.0e-49 198.0 176 64.8
PSO478G0785 Papaver somniferum HOM05D003818 ORTHO05D004541 6.5e-49 197.6 142 75.4
PSO541G1664 Papaver somniferum HOM05D003818 ORTHO05D004541 6.5e-49 197.6 142 75.4
PSO675G1382 Papaver somniferum HOM05D003818 ORTHO05D004541 6.5e-49 197.6 142 75.4
PSO782G3144 Papaver somniferum HOM05D003818 ORTHO05D004541 6.5e-49 197.6 142 75.4
CDE06G2832 Ceratophyllum demersum HOM05D003818 ORTHO05D004541 1.2e-47 193.4 141 75.9
Hma1.2p1_0270F.1_g108370 Hydrangea macrophylla HOM05D003818 ORTHO05D004541 1.2e-47 193.4 130 76.9
CANSAT56G1911 Cannabis sativa HOM05D003818 ORTHO05D004541 1.6e-47 193.0 119 83.2
Pp3c16_17050 Physcomitrium patens HOM05D003818 ORTHO05D004541 2.7e-47 192.2 145 71.0
unitig_0.g2487 Utricularia gibba HOM05D003818 ORTHO05D004541 3.6e-47 191.8 143 74.1
vmacro16312 Vaccinium macrocarpon HOM05D003818 ORTHO05D004541 5.1e-46 188.0 165 64.2
CDE02G0031 Ceratophyllum demersum HOM05D003818 ORTHO05D004541 8.8e-46 187.2 140 74.3
Lsat_1_v5_gn_3_64081 Lactuca sativa HOM05D003818 ORTHO05D004541 1.5e-45 186.4 144 70.8
DCAR_009510 Daucus carota HOM05D000059 ORTHO05D000128 1.7e-44 183.0 91 96.7
Peaxi162Scf00039g01318 Petunia axillaris HOM05D003818 ORTHO05D004541 2.8e-44 182.2 142 71.1
Peaxi162Scf01172g00037 Petunia axillaris HOM05D003818 ORTHO05D004541 4.8e-44 181.4 138 72.5
Oeu030115.1 Olea europaea HOM05D003818 ORTHO05D004541 8.2e-44 180.6 142 71.8
vmacro06714 Vaccinium macrocarpon HOM05D003818 ORTHO05D004541 4.1e-43 178.3 129 76.7
Mapoly0001s0266 Marchantia polymorpha HOM05D003818 ORTHO05D004541 6.9e-43 177.6 146 69.9
AagrBONN_evm.TU.Sc2ySwM_344.4289 Anthoceros agrestis HOM05D003818 ORTHO05D004541 9.1e-43 177.2 145 66.2
SMO200G0145 Selaginella moellendorffii HOM05D003818 ORTHO05D004541 1.5e-42 176.4 95 89.5
Gohir.D12G260866 Gossypium hirsutum HOM05D003818 ORTHO05D004541 4.5e-42 174.9 130 73.8
SalBow5G5531 Salvia bowleyana HOM05D003818 ORTHO05D004541 2.2e-41 172.6 124 77.4
Nitab4.5_0006124g0010 Nicotiana tabacum HOM05D003818 ORTHO05D004541 5.0e-41 171.4 121 78.5
TAR375G0179 Trochodendron aralioides HOM05D003818 ORTHO05D004541 5.0e-41 171.4 115 80.9
Aqoxy6G01685 Aquilegia oxysepala HOM05D003818 ORTHO05D004541 3.2e-40 168.7 136 73.5
Sc23g0003230 Simmondsia chinensis HOM05D003818 ORTHO05D004541 3.2e-40 168.7 128 72.7
Zm00001eb049200 Zea mays HOM05D003818 ORTHO05D004541 7.2e-40 167.5 121 77.7
VMungo0647G2358 Vigna mungo HOM05D003818 ORTHO05D004541 3.6e-39 165.2 102 87.3
Oeu021768.1 Olea europaea HOM05D003818 ORTHO05D004541 3.0e-38 162.2 121 76.0
MD09G1242800 Malus domestica HOM05D003818 ORTHO05D004541 3.9e-38 161.8 88 89.8
CBR_g31915 Chara braunii HOM05D003818 ORTHO05D004541 1.1e-37 160.2 144 66.7
Haze_09431 Corylus avellana HOM05D003818 ORTHO05D004541 9.7e-37 157.1 129 67.4
CAN.G97.6 Capsicum annuum HOM05D003818 ORTHO05D004541 1.8e-35 152.9 112 73.2
Prupe.7G013200 Prunus persica HOM05D003818 ORTHO05D004541 1.2e-34 150.2 98 83.7
arahy.Tifrunner.gnm1.ann1.36XVJD Arachis hypogaea HOM05D003818 ORTHO05D004541 1.7e-33 146.4 111 71.2
MELO3C003707.2 Cucumis melo HOM05D003818 ORTHO05D004541 1.9e-32 142.9 140 55.7
MCO13G124 Micromonas commoda HOM05D003818 ORTHO05D004541 1.2e-31 140.2 82 80.5
Nitab4.5_0002113g0140 Nicotiana tabacum HOM05D003818 ORTHO05D004541 2.6e-29 132.5 105 75.2
PRCOL_00007084 Prasinoderma coloniale HOM05D003818 ORTHO05D004541 4.4e-29 131.7 134 56.7
Cre01.g002200 Chlamydomonas reinhardtii HOM05D003818 ORTHO05D004541 1.7e-28 129.8 135 58.5
SalBow8G3306 Salvia bowleyana HOM05D003818 ORTHO05D004541 1.7e-28 129.8 119 63.9
SalBow8G5018 Salvia bowleyana HOM05D003818 ORTHO05D004541 1.7e-28 129.8 119 63.9
Oeu021769.1 Olea europaea HOM05D003818 ORTHO05D004541 1.4e-27 126.7 100 75.0
arahy.Tifrunner.gnm1.ann1.28837M Arachis hypogaea HOM05D003818 ORTHO05D004541 1.0e-25 120.6 132 53.8
Haze_26305 Corylus avellana HOM05D003818 ORTHO05D004541 1.7e-25 119.8 69 81.2
Nitab4.5_0002077g0060 Nicotiana tabacum HOM05D003818 ORTHO05D004541 1.7e-25 119.8 142 53.5
arahy.Tifrunner.gnm1.ann1.99YBLU Arachis hypogaea HOM05D003818 ORTHO05D004541 2.9e-25 119.0 132 56.1
TAR374G0228 Trochodendron aralioides HOM05D003818 ORTHO05D004541 4.2e-24 115.2 60 90.0
arahy.Tifrunner.gnm1.ann1.TF2L72 Arachis hypogaea HOM05D003818 ORTHO05D004541 1.6e-23 113.2 82 73.2
arahy.Tifrunner.gnm1.ann1.VWKV4W Arachis hypogaea HOM05D003818 ORTHO05D004541 2.7e-23 112.5 77 75.3
arahy.Tifrunner.gnm1.ann1.FSRU1U Arachis hypogaea HOM05D003818 ORTHO05D004541 1.4e-22 110.2 76 76.3
AagrBONN_evm.TU.Sc2ySwM_344.4292 Anthoceros agrestis HOM05D003818 ORTHO05D004541 3.7e-20 102.1 91 61.5
Os08g0426000 Oryza sativa ssp. japonica HOM05D003818 ORTHO05D295196 5.9e-18 94.7 75 68.0
PGR142G2678 Punica granatum HOM05D003818 ORTHO05D004541 7.7e-18 94.4 81 64.2
Actinidia03108 Actinidia chinensis HOM05D003818 ORTHO05D054983 2.3e-17 92.8 45 91.1
arahy.Tifrunner.gnm1.ann1.VXTW3V Arachis hypogaea HOM05D003818 ORTHO05D013217 6.6e-09 64.7 35 91.4
DCAR_013632 Daucus carota HOM05D003818 ORTHO05D175173 8.9e-06 54.3 95 44.2


User provided reference genes

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