Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G006400 Phaseolus vulgaris HOM05D004629 ORTHO05D006604 0.0e+00 1257.7 637 100.0
VMungo0720G3137 Vigna mungo HOM05D004629 ORTHO05D006604 0.0e+00 1239.6 637 98.0
Glyma.20G243700 Glycine max HOM05D004629 ORTHO05D006604 0.0e+00 1227.2 637 96.9
Glyma.10G293800 Glycine max HOM05D004629 ORTHO05D006604 0.0e+00 1206.4 631 95.9
Lj5g0025778 Lotus japonicus HOM05D004629 ORTHO05D006604 0.0e+00 1201.8 637 93.9
Ca_11347_v3 Cicer arietinum L. HOM05D004629 ORTHO05D006604 0.0e+00 1201.4 636 94.0
arahy.Tifrunner.gnm1.ann1.MLY2RP Arachis hypogaea HOM05D004629 ORTHO05D006604 0.0e+00 1201.0 637 94.5
arahy.Tifrunner.gnm1.ann1.XFL7KU Arachis hypogaea HOM05D004629 ORTHO05D006604 0.0e+00 1197.6 637 94.2
Lalb_Chr06g0164051 Lupinus albus HOM05D004629 ORTHO05D006604 0.0e+00 1195.6 637 93.7
TPR.G10403 Trifolium pratense HOM05D004629 ORTHO05D006604 0.0e+00 1193.7 635 93.5
Medtr1g116140 Medicago truncatula HOM05D004629 ORTHO05D006604 0.0e+00 1190.3 636 92.5
Lalb_Chr02g0143781 Lupinus albus HOM05D004629 ORTHO05D006604 0.0e+00 1186.4 637 92.6
Atru.chr3.2163_Atru.chr3.2169 Acer truncatum HOM05D004629 ORTHO05D006604 0.0e+00 1180.6 631 92.6
CANSAT11G0664 Cannabis sativa HOM05D004629 ORTHO05D006604 0.0e+00 1178.7 637 91.4
CiPaw.13G171100 Carya illinoinensis HOM05D004629 ORTHO05D006604 0.0e+00 1178.3 637 91.1
Dinv36331 Davidia involucrata HOM05D004629 ORTHO05D006604 0.0e+00 1178.3 637 91.8
Prupe.6G013000 Prunus persica HOM05D004629 ORTHO05D006604 0.0e+00 1173.7 636 91.7
CsaV3_1G042270 Cucumis sativus L. HOM05D004629 ORTHO05D006604 0.0e+00 1171.8 637 91.1
QL01p010068 Quercus lobata HOM05D004629 ORTHO05D006604 0.0e+00 1171.8 636 91.0
RcHm_v2.0_Chr5g0081161 Rosa chinensis HOM05D004629 ORTHO05D006604 0.0e+00 1169.8 637 91.2
Manes.03G089535 Manihot esculenta HOM05D004629 ORTHO05D006604 0.0e+00 1169.5 637 90.9
Ciclev10014585m.g Citrus clementina HOM05D004629 ORTHO05D006604 0.0e+00 1168.7 637 90.0
Actinidia06301 Actinidia chinensis HOM05D004629 ORTHO05D006604 0.0e+00 1168.3 637 91.4
Potri.003G215100 Populus trichocarpa HOM05D004629 ORTHO05D006604 0.0e+00 1167.9 637 90.9
Rhsim01G0186400 Rhododendron simsii HOM05D004629 ORTHO05D006604 0.0e+00 1167.9 637 90.9
SalBow2G2882 Salvia bowleyana HOM05D004629 ORTHO05D006604 0.0e+00 1167.1 632 91.3
MELO3C015653.2 Cucumis melo HOM05D004629 ORTHO05D006604 0.0e+00 1166.8 631 91.3
FAN11G0302 Fragaria x ananassa HOM05D004629 ORTHO05D006604 0.0e+00 1166.8 637 91.1
Thecc.10G155600 Theobroma cacao HOM05D004629 ORTHO05D006604 0.0e+00 1166.4 635 90.6
Sed0008832 Sechium edule HOM05D004629 ORTHO05D006604 0.0e+00 1166.0 636 91.2
Cfa009633 Carpinus fangiana HOM05D004629 ORTHO05D006604 0.0e+00 1164.4 637 90.6
Potri.001G010800 Populus trichocarpa HOM05D004629 ORTHO05D006604 0.0e+00 1164.1 637 90.6
Duzib128G1447 Durio zibethinus HOM05D004629 ORTHO05D006604 0.0e+00 1163.7 637 90.1
EL10Ac4g10337 Beta vulgaris HOM05D004629 ORTHO05D006604 0.0e+00 1162.9 637 89.8
MBI13_g20490_MAGBIO Magnolia biondii HOM05D004629 ORTHO05D006604 0.0e+00 1162.1 637 90.4
MSTRG.18392 Avicennia marina HOM05D004629 ORTHO05D006604 0.0e+00 1161.0 630 91.4
FAN25G1401 Fragaria x ananassa HOM05D004629 ORTHO05D006604 0.0e+00 1159.8 637 90.4
MD11G1015100 Malus domestica HOM05D004629 ORTHO05D006604 0.0e+00 1159.8 635 90.7
Sabra03G0160400 Salix brachista HOM05D004629 ORTHO05D006604 0.0e+00 1159.8 647 89.5
Ah.04g161630 Amaranthus hybridus HOM05D004629 ORTHO05D006604 0.0e+00 1157.5 636 89.2
FAN16G0373 Fragaria x ananassa HOM05D004629 ORTHO05D006604 0.0e+00 1156.7 635 90.6
MD03G1012400 Malus domestica HOM05D004629 ORTHO05D006604 0.0e+00 1156.4 636 90.6
Eucgr.B02610 Eucalyptus grandis HOM05D004629 ORTHO05D006604 0.0e+00 1155.6 636 90.1
Haze_23000 Corylus avellana HOM05D004629 ORTHO05D006604 0.0e+00 1155.2 632 90.3
PGR119G2006 Punica granatum HOM05D004629 ORTHO05D006604 0.0e+00 1155.2 634 89.9
SGA_v2.0_scaffold1G00754 Striga asiatica HOM05D004629 ORTHO05D006604 0.0e+00 1153.7 632 90.2
ClCG03G013940 Citrullus lanatus HOM05D004629 ORTHO05D006604 0.0e+00 1153.3 637 90.3
Cc01_g02770 Coffea canephora HOM05D004629 ORTHO05D006604 0.0e+00 1152.9 632 89.7
Medtr5g059390 Medicago truncatula HOM05D004629 ORTHO05D006604 0.0e+00 1152.9 636 90.4
TWI60G1346 Tripterygium wilfordii HOM05D004629 ORTHO05D006604 0.0e+00 1152.9 637 89.5
DCAR_024372 Daucus carota HOM05D004629 ORTHO05D006604 0.0e+00 1151.7 631 90.2
Hund21652 Selenicereus undatus HOM05D004629 ORTHO05D006604 0.0e+00 1151.3 637 89.0
AUR62000039 Chenopodium quinoa HOM05D004629 ORTHO05D006604 0.0e+00 1151.0 664 86.6
Sc09g0000300 Simmondsia chinensis HOM05D004629 ORTHO05D006604 0.0e+00 1149.8 637 89.6
Gohir.A05G400500 Gossypium hirsutum HOM05D004629 ORTHO05D006604 0.0e+00 1149.4 637 89.2
Oeu038860.1 Olea europaea HOM05D004629 ORTHO05D006604 0.0e+00 1149.4 632 89.6
Sopen01g002270 Solanum pennellii HOM05D004629 ORTHO05D006604 0.0e+00 1147.9 632 90.0
Solyc01g006280.3 Solanum lycopersicum HOM05D004629 ORTHO05D006604 0.0e+00 1147.5 632 90.0
Gorai.012G017900 Gossypium raimondii HOM05D004629 ORTHO05D006604 0.0e+00 1146.7 637 89.0
HanXRQChr07g0196791 Helianthus annuus HOM05D004629 ORTHO05D006604 0.0e+00 1146.7 632 89.4
Nitab4.5_0005132g0060 Nicotiana tabacum HOM05D004629 ORTHO05D006604 0.0e+00 1146.7 632 89.7
PGSC0003DMG400032146 Solanum tuberosum HOM05D004629 ORTHO05D006604 0.0e+00 1145.6 632 89.6
Gohir.D04G015400 Gossypium hirsutum HOM05D004629 ORTHO05D006604 0.0e+00 1144.8 637 88.9
Peaxi162Scf00192g00022 Petunia axillaris HOM05D004629 ORTHO05D006604 0.0e+00 1144.8 627 90.6
Migut.N02273 Erythranthe guttata HOM05D004629 ORTHO05D006604 0.0e+00 1143.6 632 89.7
ECA238G3810 Erigeron canadensis HOM05D004629 ORTHO05D006604 0.0e+00 1142.9 630 89.2
Lsat_1_v5_gn_2_101421 Lactuca sativa HOM05D004629 ORTHO05D006604 0.0e+00 1142.5 630 89.2
PSO384G3664 Papaver somniferum HOM05D004629 ORTHO05D006604 0.0e+00 1140.2 637 87.6
PSO339G6259 Papaver somniferum HOM05D004629 ORTHO05D006604 0.0e+00 1139.8 637 87.6
Thhalv10011315m.g Eutrema salsugineum HOM05D004629 ORTHO05D006604 0.0e+00 1138.6 630 87.9
AL1G58130 Arabidopsis lyrata HOM05D004629 ORTHO05D006604 0.0e+00 1138.3 637 87.6
CARHR040480 Cardamine hirsuta HOM05D004629 ORTHO05D006604 0.0e+00 1138.3 630 88.3
Aqoxy2G00099 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 0.0e+00 1136.7 636 88.5
Carub.0001s3955 Capsella rubella HOM05D004629 ORTHO05D006604 0.0e+00 1135.2 637 87.6
AT1G50480 Arabidopsis thaliana HOM05D004629 ORTHO05D006604 0.0e+00 1134.8 637 87.1
Sp1g37320 Schrenkiella parvula HOM05D004629 ORTHO05D006604 0.0e+00 1133.6 633 87.7
BcaB07g33484 Brassica carinata HOM05D004629 ORTHO05D006604 0.0e+00 1133.2 630 87.8
THA.LOC104806618 Tarenaya hassleriana HOM05D004629 ORTHO05D006604 0.0e+00 1132.1 630 88.1
BcaC08g43218 Brassica carinata HOM05D004629 ORTHO05D006604 0.0e+00 1128.2 630 87.3
C06p05660 Brassica napus HOM05D004629 ORTHO05D006604 0.0e+00 1128.2 630 87.3
BolC6t35677H Brassica oleracea HOM05D004629 ORTHO05D006604 0.0e+00 1128.2 630 87.3
BraA06t23523Z Brassica rapa HOM05D004629 ORTHO05D006604 0.0e+00 1128.2 630 87.3
Aa31LG10G3810 Aethionema arabicum HOM05D004629 ORTHO05D006604 0.0e+00 1127.5 630 87.5
TAR369G0186 Trochodendron aralioides HOM05D004629 ORTHO05D006604 0.0e+00 1126.3 632 89.1
A06p03100 Brassica napus HOM05D004629 ORTHO05D006604 0.0e+00 1125.9 630 87.1
CSS0018441 Camellia sinensis var. sinensis HOM05D004629 ORTHO05D006604 0.0e+00 1125.2 637 88.2
ATR0598G234 Amborella trichopoda HOM05D004629 ORTHO05D006604 0.0e+00 1124.8 637 87.1
BcaB02g11151 Brassica carinata HOM05D004629 ORTHO05D006604 0.0e+00 1122.5 634 86.0
BolC5t32091H Brassica oleracea HOM05D004629 ORTHO05D006604 0.0e+00 1119.8 634 85.5
BraA05t20921Z Brassica rapa HOM05D004629 ORTHO05D006604 0.0e+00 1119.8 634 85.8
CAN.G140.2 Capsicum annuum HOM05D004629 ORTHO05D006604 0.0e+00 1119.8 632 88.8
A05p20130 Brassica napus HOM05D004629 ORTHO05D006604 0.0e+00 1115.9 634 85.3
BcaC05g27413 Brassica carinata HOM05D004629 ORTHO05D006604 0.0e+00 1115.1 634 85.3
Zm00001eb314490 Zea mays HOM05D004629 ORTHO05D006604 0.0e+00 1112.4 632 86.2
HPP92_005763 Vanilla planifolia HOM05D004629 ORTHO05D006604 0.0e+00 1112.1 637 86.3
Os09g0446800 Oryza sativa ssp. japonica HOM05D004629 ORTHO05D006604 0.0e+00 1108.6 632 86.2
ECA248G3511 Erigeron canadensis HOM05D004629 ORTHO05D006604 0.0e+00 1092.0 628 85.4
HanXRQChr11g0344961 Helianthus annuus HOM05D004629 ORTHO05D006604 0.0e+00 1090.9 628 85.4
Lsat_1_v5_gn_1_68420 Lactuca sativa HOM05D004629 ORTHO05D006604 0.0e+00 1090.9 628 84.9
C05p33610 Brassica napus HOM05D004629 ORTHO05D006604 0.0e+00 1087.4 634 83.6
Ciclev10014598m.g Citrus clementina HOM05D004629 ORTHO05D006604 0.0e+00 1079.3 647 83.8
Nitab4.5_0008074g0010 Nicotiana tabacum HOM05D004629 ORTHO05D006604 6.2e-309 1063.5 582 90.2
Pp3c15_21130 Physcomitrium patens HOM05D004629 ORTHO05D006604 1.2e-304 1049.3 631 81.6
Mapoly0009s0223 Marchantia polymorpha HOM05D004629 ORTHO05D006604 1.3e-290 1002.7 631 78.3
Nn7g35984 Nelumbo nucifera HOM05D004629 ORTHO05D006604 1.3e-287 992.6 541 90.8
AUR62019209 Chenopodium quinoa HOM05D004629 ORTHO05D006604 3.9e-287 991.1 534 91.2
Lj2A677T24 Lonicera japonica HOM05D004629 ORTHO05D006604 2.4e-284 981.9 534 90.8
Psat6g238880 Pisum sativum HOM05D004629 ORTHO05D006604 3.9e-279 964.5 635 78.6
CBR_g29353 Chara braunii HOM05D004629 ORTHO05D006604 5.1e-271 937.6 648 73.6
Cre13.g566000 Chlamydomonas reinhardtii HOM05D004629 ORTHO05D006604 1.1e-265 919.8 629 73.3
FvH4_3g44470 Fragaria vesca HOM05D004629 ORTHO05D006604 1.4e-263 912.9 499 90.6
SMO364G0493 Selaginella moellendorffii HOM05D004629 ORTHO05D006604 4.4e-262 907.9 649 71.5
Cfa009637 Carpinus fangiana HOM05D004629 ORTHO05D006604 4.8e-245 851.3 503 85.3
vmacro16237 Vaccinium macrocarpon HOM05D004629 ORTHO05D006604 4.8e-245 851.3 503 85.5
Oeu046515.2 Olea europaea HOM05D004629 ORTHO05D006604 1.8e-244 849.4 632 71.5
GSVIVG01025376001 Vitis vinifera HOM05D004629 ORTHO05D006604 6.3e-237 824.3 636 69.7
MCO09G252 Micromonas commoda HOM05D004629 ORTHO05D006604 1.1e-236 823.5 637 66.6
AagrBONN_evm.TU.Sc2ySwM_117.3293 Anthoceros agrestis HOM05D004629 ORTHO05D006604 1.0e-231 807.0 496 80.6
Cfa022255 Carpinus fangiana HOM05D004629 ORTHO05D006604 3.5e-227 792.0 638 62.4
unitig_22.g5473 Utricularia gibba HOM05D004629 ORTHO05D006604 5.1e-202 708.4 444 80.4
CDE05G3086 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 1.7e-197 693.3 533 70.0
Haze_26090 Corylus avellana HOM05D004629 ORTHO05D006604 4.3e-185 652.1 641 54.0
CDE05G1958 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 2.9e-181 639.4 446 75.1
CDE05G1726 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 5.7e-177 625.2 354 88.1
CDE05G0953 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 3.7e-168 595.9 411 74.9
Cpa.g.sc119.97 Carica papaya HOM05D004629 ORTHO05D006604 9.7e-161 571.2 315 89.8
Glyma.10G112700 Glycine max HOM05D004629 ORTHO05D006604 1.9e-156 557.0 296 93.6
BcaB02g11149 Brassica carinata HOM05D004629 ORTHO05D006604 8.8e-138 495.0 271 88.9
PRCOL_00001239 Prasinoderma coloniale HOM05D004629 ORTHO05D006604 1.0e-114 418.3 527 43.8
Actinidia39366 Actinidia chinensis HOM05D004629 ORTHO05D006604 5.6e-100 369.4 201 90.0
CDE05G1698 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 1.2e-91 341.7 240 72.1
Aqoxy5G02405 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 1.3e-85 321.6 184 86.4
CDE05G0143 Ceratophyllum demersum HOM05D004629 ORTHO05D019743 2.5e-84 317.4 231 71.4
Psat2g086520 Pisum sativum HOM05D004629 ORTHO05D006604 4.9e-80 303.1 163 89.6
DCAR_017261 Daucus carota HOM05D004629 ORTHO05D006604 6.2e-75 286.2 163 85.3
Nn2g15715 Nelumbo nucifera HOM05D004629 ORTHO05D019743 1.2e-73 282.0 637 34.1
Psat2g086560 Pisum sativum HOM05D004629 ORTHO05D002382 3.2e-63 247.3 273 53.1
Sabra01G0008400 Salix brachista HOM05D004629 ORTHO05D023587 2.1e-54 218.0 226 57.5
Lj2A677G23 Lonicera japonica HOM05D004629 ORTHO05D006604 1.4e-45 188.7 104 88.5
Psat3g007720 Pisum sativum HOM05D004629 ORTHO05D006604 1.7e-43 181.8 99 91.9
Aqoxy3G01857 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 4.1e-42 177.2 104 82.7
Psat1g079640 Pisum sativum HOM05D004629 ORTHO05D023587 4.5e-41 173.7 104 80.8
Thecc.10G098800 Theobroma cacao HOM05D004629 ORTHO05D006604 1.2e-38 165.6 160 60.0
Aqoxy5G02400 Aquilegia oxysepala HOM05D004629 ORTHO05D023587 1.1e-36 159.1 90 87.8
Psat4g081680 Pisum sativum HOM05D004629 ORTHO05D019743 1.7e-35 155.2 91 85.7
Psat4g081640 Pisum sativum HOM05D004629 ORTHO05D019743 8.2e-35 152.9 172 52.9
Nn7g35985 Nelumbo nucifera HOM05D004629 ORTHO05D019743 1.4e-34 152.1 86 82.6
unitig_22.g5472 Utricularia gibba HOM05D004629 ORTHO05D006604 1.4e-34 152.1 123 65.0
AT2G12280 Arabidopsis thaliana HOM05D004629 ORTHO05D019743 1.6e-30 138.7 74 86.5
Haze_27099 Corylus avellana HOM05D004629 ORTHO05D006604 8.8e-21 106.3 116 50.9
BcaB02g11150 Brassica carinata HOM05D004629 ORTHO05D092705 1.2e-20 105.9 53 92.5
Psat4g161960 Pisum sativum HOM05D001026 ORTHO05D007776 2.8e-19 101.3 60 83.3
DCAR_026904 Daucus carota HOM05D004629 ORTHO05D023587 3.5e-17 94.4 51 86.3
CAN.G8813.1 Capsicum annuum HOM05D004629 ORTHO05D006604 4.5e-17 94.0 69 66.7
Nn1g06900 Nelumbo nucifera HOM05D004629 ORTHO05D023587 5.0e-16 90.5 49 85.7
AT2G12200 Arabidopsis thaliana HOM05D004629 ORTHO05D019743 1.1e-15 89.4 63 66.7
Aqoxy2G02051 Aquilegia oxysepala HOM05D004629 ORTHO05D004559 3.0e-13 81.3 56 66.1
ECA248G2032 Erigeron canadensis HOM05D004629 ORTHO05D189049 1.6e-09 68.9 43 74.4


User provided reference genes

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