Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.006G211900 Phaseolus vulgaris HOM05D003578 ORTHO05D004021 1.4e-296 1022.3 562 100.0
VMungo0540G1591 Vigna mungo HOM05D003578 ORTHO05D004021 3.5e-247 858.2 551 82.4
Glyma.15G048000 Glycine max HOM05D003578 ORTHO05D004021 7.8e-239 830.5 556 79.3
Lj6g0021493 Lotus japonicus HOM05D003578 ORTHO05D004021 4.1e-195 685.3 568 67.1
Lj1g0024840 Lotus japonicus HOM05D003578 ORTHO05D004021 9.7e-189 664.1 568 65.0
arahy.Tifrunner.gnm1.ann1.FVSM65 Arachis hypogaea HOM05D003578 ORTHO05D004021 1.8e-179 633.3 571 64.6
Medtr2g028550 Medicago truncatula HOM05D003578 ORTHO05D004021 8.5e-177 624.4 557 60.7
Ca_00092_v3 Cicer arietinum L. HOM05D003578 ORTHO05D004021 1.1e-176 624.0 566 60.6
Ca_29931_v3 Cicer arietinum L. HOM05D003578 ORTHO05D004021 1.1e-176 624.0 566 60.6
TPR.G17513 Trifolium pratense HOM05D003578 ORTHO05D004021 1.2e-175 620.5 566 60.2
arahy.Tifrunner.gnm1.ann1.0E6AR9 Arachis hypogaea HOM05D003578 ORTHO05D004021 4.7e-175 618.6 570 63.9
arahy.Tifrunner.gnm1.ann1.H2X3VG Arachis hypogaea HOM05D003578 ORTHO05D004021 1.0e-174 617.5 571 63.7
Lalb_Chr20g0123381 Lupinus albus HOM05D003578 ORTHO05D004021 6.3e-172 608.2 568 65.7
arahy.Tifrunner.gnm1.ann1.CJK4SJ Arachis hypogaea HOM05D003578 ORTHO05D004021 4.0e-166 589.0 582 61.2
CiPaw.06G150300 Carya illinoinensis HOM05D003578 ORTHO05D004021 1.0e-161 574.3 561 56.5
Cfa005568 Carpinus fangiana HOM05D003578 ORTHO05D004021 2.5e-160 569.7 547 57.4
Prupe.1G564000 Prunus persica HOM05D003578 ORTHO05D004021 3.4e-157 559.3 559 55.3
MD15G1419200 Malus domestica HOM05D003578 ORTHO05D004021 4.9e-156 555.4 556 54.5
Haze_10786 Corylus avellana HOM05D003578 ORTHO05D004021 5.6e-152 542.0 582 53.6
GSVIVG01023023001 Vitis vinifera HOM05D003578 ORTHO05D004021 4.0e-150 535.8 563 53.3
CANSAT11G1197 Cannabis sativa HOM05D003578 ORTHO05D004021 5.2e-150 535.4 563 55.8
Actinidia39059 Actinidia chinensis HOM05D003578 ORTHO05D004021 8.3e-148 528.1 560 51.1
TWI23G0776 Tripterygium wilfordii HOM05D003578 ORTHO05D004021 4.1e-147 525.8 563 54.0
Atru.chr6.1000 Acer truncatum HOM05D003578 ORTHO05D004021 5.9e-146 521.9 567 54.0
TWI14G0091 Tripterygium wilfordii HOM05D003578 ORTHO05D004021 7.8e-146 521.5 566 54.9
Duzib132G0407 Durio zibethinus HOM05D003578 ORTHO05D004021 1.3e-145 520.8 567 51.7
Gohir.A01G176500 Gossypium hirsutum HOM05D003578 ORTHO05D004021 8.0e-143 511.5 564 51.1
FAN13G2947 Fragaria x ananassa HOM05D003578 ORTHO05D004021 1.2e-141 507.7 565 52.9
Gorai.002G207800 Gossypium raimondii HOM05D003578 ORTHO05D004021 2.0e-141 506.9 564 50.4
QL11p018835 Quercus lobata HOM05D003578 ORTHO05D004021 1.7e-140 503.8 562 55.5
GSVIVG01013912001 Vitis vinifera HOM05D003578 ORTHO05D004021 2.2e-140 503.4 560 52.5
CSS0023378 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 1.1e-139 501.1 566 50.5
FAN18G4487 Fragaria x ananassa HOM05D003578 ORTHO05D004021 1.4e-139 500.7 565 52.9
FvH4_5g35831 Fragaria vesca HOM05D003578 ORTHO05D004021 2.4e-139 500.0 566 53.0
Thecc.02G041600 Theobroma cacao HOM05D003578 ORTHO05D004021 5.4e-139 498.8 567 53.8
Ciclev10007743m.g Citrus clementina HOM05D003578 ORTHO05D004021 7.0e-139 498.4 567 49.4
Cpa.g.sc2.28 Carica papaya HOM05D003578 ORTHO05D004021 1.6e-138 497.3 567 54.3
arahy.Tifrunner.gnm1.ann1.V2489D Arachis hypogaea HOM05D003578 ORTHO05D004021 3.5e-138 496.1 579 54.4
FAN08G2591 Fragaria x ananassa HOM05D003578 ORTHO05D004021 4.6e-138 495.7 565 52.6
CSS0005813 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 7.8e-138 495.0 574 51.0
Gohir.A03G210700 Gossypium hirsutum HOM05D003578 ORTHO05D004021 1.0e-137 494.6 567 49.4
MELO3C006920.2 Cucumis melo HOM05D003578 ORTHO05D004021 5.6e-136 488.8 572 50.5
FAN04G0507 Fragaria x ananassa HOM05D003578 ORTHO05D004021 9.5e-136 488.0 564 52.5
RcHm_v2.0_Chr5g0046031 Rosa chinensis HOM05D003578 ORTHO05D004021 2.8e-135 486.5 569 50.8
CsaV3_3G018800 Cucumis sativus L. HOM05D003578 ORTHO05D004021 1.4e-134 484.2 573 49.6
Potri.001G208700 Populus trichocarpa HOM05D003578 ORTHO05D004021 1.4e-134 484.2 569 48.0
Sed0026866 Sechium edule HOM05D003578 ORTHO05D004021 5.2e-134 482.3 575 48.5
THA.LOC104824162 Tarenaya hassleriana HOM05D003578 ORTHO05D004021 6.8e-134 481.9 542 50.2
ClCG05G009820 Citrullus lanatus HOM05D003578 ORTHO05D004021 1.2e-133 481.1 580 49.1
Rhsim11G0132000 Rhododendron simsii HOM05D003578 ORTHO05D004021 2.6e-133 479.9 589 47.9
PGR042G1741 Punica granatum HOM05D003578 ORTHO05D004021 4.4e-133 479.2 557 50.1
Dinv19347 Davidia involucrata HOM05D003578 ORTHO05D004021 1.7e-132 477.2 572 48.1
Eucgr.G00633 Eucalyptus grandis HOM05D003578 ORTHO05D004021 6.4e-132 475.3 533 48.6
Gorai.005G260100 Gossypium raimondii HOM05D003578 ORTHO05D004021 5.4e-131 472.2 567 51.9
arahy.Tifrunner.gnm1.ann1.MNPV6T Arachis hypogaea HOM05D003578 ORTHO05D004021 9.2e-131 471.5 459 61.4
MSTRG.16537 Avicennia marina HOM05D003578 ORTHO05D004021 1.2e-130 471.1 566 47.2
Gohir.D02G232300 Gossypium hirsutum HOM05D003578 ORTHO05D004021 2.1e-130 470.3 567 51.7
Aa31LG8G7140 Aethionema arabicum HOM05D003578 ORTHO05D004021 4.6e-130 469.2 554 48.4
Oeu000197.1 Olea europaea HOM05D003578 ORTHO05D004021 4.3e-128 462.6 565 46.7
Sabra01G0161000 Salix brachista HOM05D003578 ORTHO05D004021 2.1e-127 460.3 636 44.3
SGA_v2.0_scaffold1G00330 Striga asiatica HOM05D003578 ORTHO05D004021 3.6e-127 459.5 561 46.7
Cc02_g22230 Coffea canephora HOM05D003578 ORTHO05D004021 1.3e-124 451.1 566 45.6
Sc20g0004020 Simmondsia chinensis HOM05D003578 ORTHO05D004021 1.7e-124 450.7 576 44.8
MBI06_g22317_MAGBIO Magnolia biondii HOM05D003578 ORTHO05D004021 1.1e-123 448.0 564 46.3
PSO478G2549 Papaver somniferum HOM05D003578 ORTHO05D004021 4.6e-122 442.6 546 44.9
PSO017G3053 Papaver somniferum HOM05D003578 ORTHO05D004021 1.0e-121 441.4 525 45.9
Aa31LG2G6060 Aethionema arabicum HOM05D003578 ORTHO05D004021 2.3e-121 440.3 556 45.9
Hund15694 Selenicereus undatus HOM05D003578 ORTHO05D004021 2.3e-121 440.3 562 45.4
Psat1g170680 Pisum sativum HOM05D003578 ORTHO05D004021 3.0e-121 439.9 462 53.5
vmacro01788 Vaccinium macrocarpon HOM05D003578 ORTHO05D004021 6.6e-121 438.7 570 48.8
Aqoxy7G03367 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 9.6e-120 434.9 540 46.1
PSO478G5278 Papaver somniferum HOM05D003578 ORTHO05D004021 2.1e-119 433.7 547 45.3
PSO266G0076 Papaver somniferum HOM05D003578 ORTHO05D004021 3.6e-119 433.0 547 45.3
SGA_v2.0_scaffold110G31277 Striga asiatica HOM05D003578 ORTHO05D004021 1.1e-118 431.4 576 44.6
Carub.0005s2123 Capsella rubella HOM05D003578 ORTHO05D004021 4.0e-118 429.5 538 45.2
Nitab4.5_0003071g0040 Nicotiana tabacum HOM05D003578 ORTHO05D004021 5.2e-118 429.1 565 46.9
MD08G1226900 Malus domestica HOM05D003578 ORTHO05D004021 8.9e-118 428.3 453 51.9
CARHR164540 Cardamine hirsuta HOM05D003578 ORTHO05D004021 1.2e-117 427.9 529 45.2
Psat1g170240 Pisum sativum HOM05D003578 ORTHO05D004021 4.4e-117 426.0 472 51.9
AUR62033619 Chenopodium quinoa HOM05D003578 ORTHO05D004021 3.2e-115 419.9 541 46.2
BcaB02g07728 Brassica carinata HOM05D003578 ORTHO05D004021 1.1e-112 411.4 560 42.0
AL5G35710 Arabidopsis lyrata HOM05D003578 ORTHO05D004021 1.9e-112 410.6 531 43.7
Lsat_1_v5_gn_9_116440 Lactuca sativa HOM05D003578 ORTHO05D004021 1.9e-112 410.6 569 41.8
COL.COLO4_33122 Corchorus olitorius HOM05D003578 ORTHO05D004021 7.3e-112 408.7 563 45.6
SHI16565 Sapria himalayana HOM05D003578 ORTHO05D004021 9.6e-112 408.3 527 43.1
AUR62038607 Chenopodium quinoa HOM05D003578 ORTHO05D004021 1.6e-111 407.5 573 44.5
Migut.B00662 Erythranthe guttata HOM05D003578 ORTHO05D004021 1.6e-111 407.5 570 42.1
Nitab4.5_0009907g0020 Nicotiana tabacum HOM05D003578 ORTHO05D004021 1.8e-110 404.1 569 44.5
BolC6t37412H Brassica oleracea HOM05D003578 ORTHO05D004021 5.8e-109 399.1 559 42.6
Aqoxy2G04052 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 4.9e-108 396.0 540 45.4
CSS0048877 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 4.9e-108 396.0 602 43.5
BolC8t50589H Brassica oleracea HOM05D003578 ORTHO05D004021 8.4e-108 395.2 553 41.2
ECA238G3381 Erigeron canadensis HOM05D003578 ORTHO05D004021 8.4e-108 395.2 575 41.0
Thhalv10010243m.g Eutrema salsugineum HOM05D003578 ORTHO05D004021 4.2e-107 392.9 558 40.9
C08p29780 Brassica napus HOM05D003578 ORTHO05D004021 5.4e-107 392.5 553 41.0
Nn1g08568 Nelumbo nucifera HOM05D003578 ORTHO05D004021 9.3e-107 391.7 456 48.9
DCAR_029239 Daucus carota HOM05D003578 ORTHO05D004021 1.2e-106 391.3 564 41.5
BcaC08g44691 Brassica carinata HOM05D003578 ORTHO05D004021 2.1e-106 390.6 557 41.7
AT3G54630 Arabidopsis thaliana HOM05D003578 ORTHO05D004021 3.5e-106 389.8 531 41.6
BcaC07g39801 Brassica carinata HOM05D003578 ORTHO05D004021 1.3e-105 387.9 553 40.7
Solyc01g104570.4 Solanum lycopersicum HOM05D003578 ORTHO05D004021 6.6e-105 385.6 565 46.0
Peaxi162Scf00011g01125 Petunia axillaris HOM05D003578 ORTHO05D004021 8.7e-105 385.2 552 41.7
CAN.G1352.14 Capsicum annuum HOM05D003578 ORTHO05D004021 1.1e-104 384.8 491 48.9
Sopen01g047080 Solanum pennellii HOM05D003578 ORTHO05D004021 2.5e-104 383.6 565 45.7
PGSC0003DMG400029761 Solanum tuberosum HOM05D003578 ORTHO05D004021 1.6e-103 380.9 565 45.1
unitig_8.g4524 Utricularia gibba HOM05D003578 ORTHO05D004021 3.6e-103 379.8 564 41.0
A09p47580 Brassica napus HOM05D003578 ORTHO05D004021 4.8e-103 379.4 552 40.8
BraA09t40214Z Brassica rapa HOM05D003578 ORTHO05D004021 8.1e-103 378.6 552 40.8
Gohir.D01G167300 Gossypium hirsutum HOM05D003578 ORTHO05D004021 9.0e-102 375.2 387 51.7
Sp5g07820 Schrenkiella parvula HOM05D003578 ORTHO05D004021 3.8e-100 369.8 558 41.2
BcaB01g00173 Brassica carinata HOM05D003578 ORTHO05D004021 2.4e-99 367.1 564 38.3
HanXRQChr03g0066191 Helianthus annuus HOM05D003578 ORTHO05D004021 4.6e-98 362.8 571 39.9
CDE10G0634 Ceratophyllum demersum HOM05D003578 ORTHO05D004021 5.1e-97 359.4 558 39.2
Manes.07G012900 Manihot esculenta HOM05D003578 ORTHO05D004021 2.0e-93 347.4 459 45.8
Nn1g08571 Nelumbo nucifera HOM05D003578 ORTHO05D004021 2.0e-93 347.4 362 51.4
EL10Ac2g02673 Beta vulgaris HOM05D003578 ORTHO05D004021 2.2e-92 344.0 561 39.8
C06p22270 Brassica napus HOM05D003578 ORTHO05D004021 2.2e-92 344.0 557 39.0
Lsat_1_v5_gn_9_118160 Lactuca sativa HOM05D003578 ORTHO05D004021 4.9e-92 342.8 564 37.4
HanXRQChr03g0066541 Helianthus annuus HOM05D003578 ORTHO05D004021 4.3e-88 329.7 565 38.2
Oeu026056.1 Olea europaea HOM05D003578 ORTHO05D004021 2.1e-87 327.4 465 42.2
Ah.10g033260 Amaranthus hybridus HOM05D003578 ORTHO05D004021 2.6e-85 320.5 564 38.5
TAR374G1024 Trochodendron aralioides HOM05D003578 ORTHO05D004021 9.3e-83 312.0 261 62.1
Eucgr.G00629 Eucalyptus grandis HOM05D003578 ORTHO05D004021 4.6e-82 309.7 423 43.0
CiPaw.05G040700 Carya illinoinensis HOM05D003578 ORTHO05D004021 1.0e-81 308.5 255 61.6
Lj1C1063G12 Lonicera japonica HOM05D003578 ORTHO05D004021 5.7e-80 302.8 370 47.3
HPP92_025499 Vanilla planifolia HOM05D003578 ORTHO05D004021 5.9e-77 292.7 551 37.9
Os08g0468400 Oryza sativa ssp. japonica HOM05D003578 ORTHO05D004021 5.0e-68 263.1 564 31.7
SEGI_09452 Sequoiadendron giganteum HOM05D003578 ORTHO05D004021 1.1e-62 245.4 403 33.5
ATR0193G049 Amborella trichopoda HOM05D003578 ORTHO05D004021 2.4e-62 244.2 442 34.6
CsaV3_3G021940 Cucumis sativus L. HOM05D003578 ORTHO05D004021 1.1e-59 235.3 241 51.9
Aqoxy2G02351 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 1.3e-55 221.9 307 41.4
CiPaw.05G040600 Carya illinoinensis HOM05D003578 ORTHO05D004021 1.9e-51 208.0 241 52.7
HPP92_025538 Vanilla planifolia HOM05D003578 ORTHO05D004021 3.1e-46 190.7 240 40.8
SEGI_11795 Sequoiadendron giganteum HOM05D003578 ORTHO05D004021 1.7e-44 184.9 335 33.1
GSVIVG01023069001 Vitis vinifera HOM05D003578 ORTHO05D004021 8.0e-42 176.0 244 43.0
SMO254G0006 Selaginella moellendorffii HOM05D003578 ORTHO05D004021 4.0e-41 173.7 548 24.6
GSVIVG01023034001 Vitis vinifera HOM05D003578 ORTHO05D004021 1.4e-38 165.2 153 59.5
GSVIVG01023046001 Vitis vinifera HOM05D003578 ORTHO05D004021 2.4e-38 164.5 153 59.5
Mapoly0042s0088 Marchantia polymorpha HOM05D003578 ORTHO05D004021 3.1e-38 164.1 483 27.1
A07p22210 Brassica napus HOM05D003578 ORTHO05D004021 1.2e-37 162.2 161 46.6
arahy.Tifrunner.gnm1.ann1.0Y2WZB Arachis hypogaea HOM05D003578 ORTHO05D004021 7.7e-37 159.5 130 66.2
Lj1A1063T36 Lonicera japonica HOM05D003578 ORTHO05D004021 6.6e-36 156.4 153 54.2
Zm00001eb040130 Zea mays HOM05D003578 ORTHO05D004021 1.6e-34 151.8 359 29.2
Pp3c7_8870 Physcomitrium patens HOM05D003578 ORTHO05D004021 1.0e-33 149.1 544 24.4
Cre02.g098300 Chlamydomonas reinhardtii HOM05D003578 ORTHO05D004021 1.5e-32 145.2 530 25.3
arahy.Tifrunner.gnm1.ann1.3K20HM Arachis hypogaea HOM05D003578 ORTHO05D004021 6.4e-31 139.8 172 47.7
PRCOL_00003819 Prasinoderma coloniale HOM05D003578 ORTHO05D004021 3.2e-30 137.5 553 25.1
Nn7g38101 Nelumbo nucifera HOM05D003578 ORTHO05D004021 4.1e-30 137.1 164 46.3
ATR0686G046 Amborella trichopoda HOM05D003578 ORTHO05D004021 2.5e-27 127.9 143 44.8
Aqoxy2G02352 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 1.5e-24 118.6 143 44.8
GSVIVG01023076001 Vitis vinifera HOM05D003578 ORTHO05D004021 6.4e-23 113.2 98 59.2
Nn1g00799 Nelumbo nucifera HOM05D003578 ORTHO05D004021 8.3e-23 112.8 201 38.3
Actinidia00223 Actinidia chinensis HOM05D003578 ORTHO05D004021 1.1e-22 112.5 524 24.8
Nn1g00803 Nelumbo nucifera HOM05D003578 ORTHO05D004021 4.1e-22 110.5 125 46.4
HPP92_026283 Vanilla planifolia HOM05D003578 ORTHO05D004021 4.1e-22 110.5 172 36.6
Lsat_1_v5_gn_4_72880 Lactuca sativa HOM05D003578 ORTHO05D004021 5.4e-22 110.2 174 35.6
Nn1g08562 Nelumbo nucifera HOM05D003578 ORTHO05D004021 2.7e-21 107.8 115 48.7
Pp3c11_11580 Physcomitrium patens HOM05D003578 ORTHO05D004021 4.6e-21 107.1 469 22.6
CAN.G1352.18 Capsicum annuum HOM05D003578 ORTHO05D004021 8.6e-20 102.8 155 37.4
CBR_g55876 Chara braunii HOM05D003578 ORTHO05D004021 8.6e-20 102.8 527 24.9
Lsat_1_v5_gn_4_97940 Lactuca sativa HOM05D003523 ORTHO05D004021 5.6e-19 100.1 92 53.3
Zm00001eb317570 Zea mays HOM05D003578 ORTHO05D004021 2.3e-17 94.7 141 38.3
COL.COLO4_34280 Corchorus olitorius HOM05D003578 ORTHO05D004021 5.2e-17 93.6 67 67.2
CsaV3_6G032180 Cucumis sativus L. HOM05D003578 ORTHO05D004021 1.2e-16 92.4 105 43.8
GSVIVG01038756001 Vitis vinifera HOM05D003578 ORTHO05D004021 2.6e-16 91.3 94 52.1
arahy.Tifrunner.gnm1.ann1.ZN95YA Arachis hypogaea HOM05D003578 ORTHO05D004021 5.8e-16 90.1 79 58.2
PGSC0003DMG400023774 Solanum tuberosum HOM05D003578 ORTHO05D004021 7.5e-16 89.7 123 43.1
Zm00001eb226250 Zea mays HOM05D003578 ORTHO05D004021 9.8e-16 89.4 116 39.7
Lsat_1_v5_gn_3_132221 Lactuca sativa HOM05D003523 ORTHO05D004493 8.3e-15 86.3 73 56.2
Solyc01g104520.3 Solanum lycopersicum HOM05D003578 ORTHO05D004021 2.4e-14 84.7 122 45.1
GSVIVG01023027001 Vitis vinifera HOM05D003578 ORTHO05D004021 3.5e-13 80.9 69 63.8
arahy.Tifrunner.gnm1.ann1.7PH810 Arachis hypogaea HOM05D003578 ORTHO05D004021 3.0e-12 77.8 107 50.5
ATR0193G025 Amborella trichopoda HOM05D003578 ORTHO05D004021 3.9e-12 77.4 153 34.6
GSVIVG01023070001 Vitis vinifera HOM05D003578 ORTHO05D004021 1.1e-09 69.3 55 61.8
MCO01G050 Micromonas commoda HOM05D003578 ORTHO05D004021 1.4e-09 68.9 206 26.7
ATR0686G029 Amborella trichopoda HOM05D003578 ORTHO05D004021 2.3e-09 68.2 116 38.8
Atru.chr6.1018 Acer truncatum HOM05D003578 ORTHO05D004021 3.1e-09 67.8 66 59.1
Aqoxy2G04053 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 4.0e-09 67.4 62 50.0
Aqoxy7G03366 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 4.0e-09 67.4 62 50.0
Zm00001eb322170 Zea mays HOM05D003578 ORTHO05D004021 1.5e-08 65.5 77 40.3
FAN11G2867 Fragaria x ananassa HOM05D001988 ORTHO05D006298 3.4e-08 64.3 68 52.9
Nn7g38100 Nelumbo nucifera HOM05D003578 ORTHO05D004021 2.4e-06 58.2 128 35.9


User provided reference genes

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