Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.006G204500 Phaseolus vulgaris HOM05D009394 ORTHO05D002431 2.1e-47 192.2 107 100.0
Glyma.15G055400 Glycine max HOM05D009394 ORTHO05D002431 4.8e-28 127.9 108 67.6
Glyma.02G278700 Glycine max HOM05D009394 ORTHO05D002431 9.9e-26 120.2 107 56.1
Lalb_Chr04g0249281 Lupinus albus HOM05D009394 ORTHO05D002431 5.4e-24 114.4 108 53.7
Lalb_Chr10g0106201 Lupinus albus HOM05D009394 ORTHO05D002431 7.1e-24 114.0 106 53.8
LjContig00564g0021896 Lotus japonicus HOM05D009394 ORTHO05D002431 1.0e-22 110.2 108 63.9
Phvul.008G202100 Phaseolus vulgaris HOM05D009394 ORTHO05D002431 4.8e-20 101.3 107 47.7
Medtr5g089290 Medicago truncatula HOM05D009394 ORTHO05D002431 1.4e-19 99.8 118 55.1
Psat2g020800 Pisum sativum HOM05D009394 ORTHO05D002431 5.3e-19 97.8 142 44.4
CiPaw.13G149300 Carya illinoinensis HOM05D002917 ORTHO05D002431 2.0e-18 95.9 98 48.0
Haze_23253 Corylus avellana HOM05D002917 ORTHO05D002431 3.4e-18 95.1 104 46.2
arahy.Tifrunner.gnm1.ann1.NQ28YP Arachis hypogaea HOM05D009394 ORTHO05D002431 9.9e-18 93.6 107 60.7
Prupe.4G264200 Prunus persica HOM05D002917 ORTHO05D002431 9.9e-18 93.6 107 45.8
Psat5g191400 Pisum sativum HOM05D009394 ORTHO05D002431 1.7e-17 92.8 117 45.3
Eucgr.J00684 Eucalyptus grandis HOM05D002917 ORTHO05D002431 2.2e-17 92.4 103 47.6
CANSAT54G1823 Cannabis sativa HOM05D002917 ORTHO05D002431 2.9e-17 92.0 105 45.7
TPR.G16410 Trifolium pratense HOM05D009394 ORTHO05D002431 3.8e-17 91.7 143 42.7
Manes.02G136400 Manihot esculenta HOM05D002917 ORTHO05D002431 4.9e-17 91.3 107 46.7
QL01p016834 Quercus lobata HOM05D012161 ORTHO05D002431 4.2e-16 88.2 105 41.0
arahy.Tifrunner.gnm1.ann1.S8RCCH Arachis hypogaea HOM05D009394 ORTHO05D002431 7.1e-16 87.4 110 56.4
Atru.chr3.2999 Acer truncatum HOM05D002917 ORTHO05D002431 1.6e-15 86.3 104 45.2
PGR119G1093 Punica granatum HOM05D002917 ORTHO05D002431 1.6e-15 86.3 103 46.6
Thecc.09G247400 Theobroma cacao HOM05D002917 ORTHO05D002431 2.7e-15 85.5 98 46.9
GSVIVG01037326001 Vitis vinifera HOM05D002917 ORTHO05D002431 2.7e-15 85.5 105 44.8
MD03G1164700 Malus domestica HOM05D012161 ORTHO05D002431 4.6e-15 84.7 97 49.5
Medtr3g436750 Medicago truncatula HOM05D009394 ORTHO05D002431 2.3e-14 82.4 102 56.9
Duzib170G0372 Durio zibethinus HOM05D006044 ORTHO05D007653 3.0e-14 82.0 103 41.7
Glyma.07G232600 Glycine max HOM05D009394 ORTHO05D002431 3.9e-14 81.6 117 54.7
Ciclev10018107m.g Citrus clementina HOM05D002917 ORTHO05D002431 8.7e-14 80.5 105 41.9
FAN21G0185 Fragaria x ananassa HOM05D002917 ORTHO05D002431 3.3e-13 78.6 100 44.0
CSS0039673 Camellia sinensis var. sinensis HOM05D002917 ORTHO05D002431 4.3e-13 78.2 107 41.1
Potri.001G273300 Populus trichocarpa HOM05D002917 ORTHO05D002431 9.6e-13 77.0 107 37.4
AT5G19473 Arabidopsis thaliana HOM05D002917 ORTHO05D002431 2.1e-12 75.9 109 39.4
Lj6g0020665 Lotus japonicus HOM05D009394 ORTHO05D002431 2.1e-12 75.9 96 52.1
Aqoxy1G00393 Aquilegia oxysepala HOM05D002917 ORTHO05D002431 3.7e-12 75.1 107 41.1
Lalb_Chr18g0049791 Lupinus albus HOM05D009394 ORTHO05D002431 4.8e-12 74.7 57 61.4
Phvul.006G015600 Phaseolus vulgaris HOM05D009394 ORTHO05D002431 4.8e-12 74.7 69 56.5
CsaV3_6G038900 Cucumis sativus L. HOM05D009394 ORTHO05D002431 6.2e-12 74.3 55 60.0
AL6G30970 Arabidopsis lyrata HOM05D002917 ORTHO05D002431 8.2e-12 73.9 109 39.4
Nn7g36760 Nelumbo nucifera HOM05D002917 ORTHO05D002431 4.0e-11 71.6 97 41.2
Potri.009G067600 Populus trichocarpa HOM05D002917 ORTHO05D002431 9.0e-11 70.5 107 38.3
Gohir.A09G110600 Gossypium hirsutum HOM05D009394 ORTHO05D002431 1.2e-10 70.1 107 40.2
Gohir.D09G107100 Gossypium hirsutum HOM05D009394 ORTHO05D002431 1.2e-10 70.1 107 40.2
Gorai.006G124700 Gossypium raimondii HOM05D009394 ORTHO05D002431 1.2e-10 70.1 107 40.2
THA.LOC104799140 Tarenaya hassleriana HOM05D012161 ORTHO05D002431 1.5e-10 69.7 108 49.1
Carub.0006s1781 Capsella rubella HOM05D002917 ORTHO05D002431 2.0e-10 69.3 96 39.6
Dinv15024 Davidia involucrata HOM05D002917 ORTHO05D002431 2.6e-10 68.9 58 58.6
Sabra16G0168400 Salix brachista HOM05D002917 ORTHO05D002431 4.5e-10 68.2 98 39.8
HPP92_001700 Vanilla planifolia HOM05D002917 ORTHO05D002431 1.3e-09 66.6 102 34.3
Rhsim13G0207800 Rhododendron simsii HOM05D002917 ORTHO05D002431 3.8e-09 65.1 97 39.2
Gorai.004G015000 Gossypium raimondii HOM05D009394 ORTHO05D002431 6.5e-09 64.3 44 61.4
Sc09g0001070 Simmondsia chinensis HOM05D009394 ORTHO05D002431 6.5e-09 64.3 112 33.9
Thhalv10015114m.g Eutrema salsugineum HOM05D002917 ORTHO05D002431 8.4e-09 63.9 105 47.6
Oeu032569.1 Olea europaea HOM05D002917 ORTHO05D002431 8.4e-09 63.9 97 36.1
MBI19_g20793_MAGBIO Magnolia biondii HOM05D002917 ORTHO05D002431 1.1e-08 63.5 101 41.6
CSS0017424 Camellia sinensis var. sinensis HOM05D002917 ORTHO05D002431 3.2e-08 62.0 45 64.4
Gohir.A08G010300 Gossypium hirsutum HOM05D009394 ORTHO05D002431 3.2e-08 62.0 41 63.4
Gohir.D08G020400 Gossypium hirsutum HOM05D009394 ORTHO05D002431 3.2e-08 62.0 41 63.4
HanXRQChr09g0259721 Helianthus annuus HOM05D002917 ORTHO05D002431 3.2e-08 62.0 106 43.4
Sopen11g024730 Solanum pennellii HOM05D012161 ORTHO05D002431 3.2e-08 62.0 99 32.3
Nitab4.5_0006764g0020 Nicotiana tabacum HOM05D012161 ORTHO05D002431 5.5e-08 61.2 38 63.2
Nitab4.5_0009266g0010 Nicotiana tabacum HOM05D012161 ORTHO05D002431 5.5e-08 61.2 38 63.2
Lalb_Chr13g0296221 Lupinus albus HOM05D002917 ORTHO05D002431 7.1e-08 60.8 103 34.0
Sp6g24940 Schrenkiella parvula HOM05D002917 ORTHO05D002431 7.1e-08 60.8 102 45.1
BcaB01g04859 Brassica carinata HOM05D002917 ORTHO05D002431 9.3e-08 60.5 102 48.0
CAN.G468.5 Capsicum annuum HOM05D012161 ORTHO05D002431 9.3e-08 60.5 95 32.6
CARHR193450 Cardamine hirsuta HOM05D002917 ORTHO05D002431 1.2e-07 60.1 106 47.2
Glyma.08G142000 Glycine max HOM05D002917 ORTHO05D002431 1.2e-07 60.1 103 32.0
HanXRQChr15g0493491 Helianthus annuus HOM05D002917 ORTHO05D002431 1.6e-07 59.7 108 33.3
PGSC0003DMG400004715 Solanum tuberosum HOM05D023424 ORTHO05D002431 1.6e-07 59.7 101 35.6
arahy.Tifrunner.gnm1.ann1.48WV5B Arachis hypogaea HOM05D033084 ORTHO05D002431 2.1e-07 59.3 59 49.2
arahy.Tifrunner.gnm1.ann1.7K9SF4 Arachis hypogaea HOM05D033084 ORTHO05D002431 2.1e-07 59.3 59 49.2
A03p09490 Brassica napus HOM05D002917 ORTHO05D002431 2.1e-07 59.3 102 47.1
A10p20240 Brassica napus HOM05D006224 ORTHO05D007691 2.1e-07 59.3 101 49.5
C03p11070 Brassica napus HOM05D002917 ORTHO05D002431 2.1e-07 59.3 102 46.1
C09p56830 Brassica napus HOM05D002917 ORTHO05D002431 2.1e-07 59.3 101 49.5
BolC3t13577H Brassica oleracea HOM05D002917 ORTHO05D002431 2.1e-07 59.3 102 46.1
BolC9t58537H Brassica oleracea HOM05D002917 ORTHO05D002431 2.1e-07 59.3 101 49.5
BraA03t10267Z Brassica rapa HOM05D002917 ORTHO05D002431 2.1e-07 59.3 102 47.1
Nitab4.5_0004378g0020 Nicotiana tabacum HOM05D002917 ORTHO05D002431 2.1e-07 59.3 110 32.7
Sabra09G0050600 Salix brachista HOM05D002917 ORTHO05D002431 2.1e-07 59.3 57 49.1
BcaB01g05147 Brassica carinata HOM05D002917 ORTHO05D002431 2.7e-07 58.9 102 45.1
Glyma.04G219000 Glycine max HOM05D002917 ORTHO05D002431 2.7e-07 58.9 107 34.6
RcHm_v2.0_Chr2g0116611 Rosa chinensis HOM05D002917 ORTHO05D002431 2.7e-07 58.9 103 31.1
RcHm_v2.0_Chr5g0050361 Rosa chinensis HOM05D012161 ORTHO05D002431 2.7e-07 58.9 56 50.0
Lj4g0006175 Lotus japonicus HOM05D002917 ORTHO05D002431 3.5e-07 58.5 104 33.7
TPR.G2220 Trifolium pratense HOM05D002917 ORTHO05D002431 3.5e-07 58.5 104 30.8
arahy.Tifrunner.gnm1.ann1.CBHP4D Arachis hypogaea HOM05D002917 ORTHO05D002431 4.6e-07 58.2 107 32.7
Lsat_1_v5_gn_1_14961 Lactuca sativa HOM05D002917 ORTHO05D002431 4.6e-07 58.2 105 32.4
Solyc12g099780.2 Solanum lycopersicum HOM05D023424 ORTHO05D002431 4.6e-07 58.2 100 33.0
FvH4_1g22590 Fragaria vesca HOM05D002917 ORTHO05D002431 6.0e-07 57.8 103 30.1
FvH4_3g27760 Fragaria vesca HOM05D012161 ORTHO05D002431 6.0e-07 57.8 48 58.3
FAN11G3775 Fragaria x ananassa HOM05D012161 ORTHO05D002431 6.0e-07 57.8 48 58.3
FAN23G2482 Fragaria x ananassa HOM05D002917 ORTHO05D002431 6.0e-07 57.8 102 30.4
FAN28G1462 Fragaria x ananassa HOM05D002917 ORTHO05D002431 6.0e-07 57.8 102 30.4
Peaxi162Scf00272g00824 Petunia axillaris HOM05D023424 ORTHO05D002431 6.0e-07 57.8 105 35.2
TPR.G23761 Trifolium pratense HOM05D002917 ORTHO05D002431 6.0e-07 57.8 103 34.0
TPR.G24378 Trifolium pratense HOM05D012161 ORTHO05D002431 6.0e-07 57.8 59 52.5
Cpa.g.sc34.178 Carica papaya HOM05D009394 ORTHO05D002431 7.9e-07 57.4 49 63.3
Cc07_g16300 Coffea canephora HOM05D002917 ORTHO05D002431 7.9e-07 57.4 103 38.8
Medtr3g094970 Medicago truncatula HOM05D002917 ORTHO05D002431 7.9e-07 57.4 107 33.6
VMungo1309G1910 Vigna mungo HOM05D002917 ORTHO05D002431 7.9e-07 57.4 107 37.4
Glyma.06G146800 Glycine max HOM05D002917 ORTHO05D002431 1.0e-06 57.0 107 34.6
Sopen04g006050 Solanum pennellii HOM05D002917 ORTHO05D002431 1.0e-06 57.0 108 32.4
CiPaw.04G091400 Carya illinoinensis HOM05D002917 ORTHO05D002431 1.3e-06 56.6 105 45.7
Lalb_Chr12g0203511 Lupinus albus HOM05D002917 ORTHO05D002431 1.3e-06 56.6 105 33.3
CSS0010926 Camellia sinensis var. sinensis HOM05D002917 ORTHO05D002431 1.8e-06 56.2 48 58.3
ECA238G1147 Erigeron canadensis HOM05D002917 ORTHO05D002431 1.8e-06 56.2 104 30.8
MBI13_g08983_MAGBIO Magnolia biondii HOM05D002917 ORTHO05D002431 1.8e-06 56.2 34 70.6
Nitab4.5_0004840g0020 Nicotiana tabacum HOM05D002917 ORTHO05D002431 1.8e-06 56.2 105 32.4
Nitab4.5_0007284g0050 Nicotiana tabacum HOM05D002917 ORTHO05D002431 1.8e-06 56.2 105 32.4
PSO541G0125 Papaver somniferum HOM05D002917 ORTHO05D002431 1.8e-06 56.2 105 42.9
PSO675G5205 Papaver somniferum HOM05D002917 ORTHO05D002431 1.8e-06 56.2 105 42.9
TWI53G0786 Tripterygium wilfordii HOM05D002917 ORTHO05D002431 1.8e-06 56.2 103 40.8
Eucgr.I00320 Eucalyptus grandis HOM05D002917 ORTHO05D002431 2.3e-06 55.8 105 31.4
Phvul.002G265100 Phaseolus vulgaris HOM05D002917 ORTHO05D002431 3.0e-06 55.5 103 31.1
SGA_v2.0_scaffold47G17704 Striga asiatica HOM05D002917 ORTHO05D002431 5.1e-06 54.7 102 34.3
Actinidia06975 Actinidia chinensis HOM05D009394 ORTHO05D002431 6.7e-06 54.3 44 45.5
Lalb_Chr08g0238811 Lupinus albus HOM05D002917 ORTHO05D002431 6.7e-06 54.3 107 34.6
Peaxi162Scf00359g00124 Petunia axillaris HOM05D002917 ORTHO05D002431 6.7e-06 54.3 104 30.8
Aa31LG3G17190 Aethionema arabicum HOM05D002917 ORTHO05D002431 8.7e-06 53.9 111 28.8
COL.COLO4_24485 Corchorus olitorius HOM05D009394 ORTHO05D002431 8.7e-06 53.9 36 69.4
Manes.12G143000 Manihot esculenta HOM05D002917 ORTHO05D002431 8.7e-06 53.9 106 33.0
Psat7g051000 Pisum sativum HOM05D002917 ORTHO05D002431 8.7e-06 53.9 103 39.8
Solyc04g011910.3 Solanum lycopersicum HOM05D002917 ORTHO05D002431 8.7e-06 53.9 106 31.1


User provided reference genes

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