Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.006G168127 Phaseolus vulgaris HOM05D005337 ORTHO05D006567 8.0e-173 611.7 786 100.0
VMungo0540G1354 Vigna mungo HOM05D005337 ORTHO05D006567 2.1e-141 507.3 793 92.7
Glyma.15G090700 Glycine max HOM05D005337 ORTHO05D006567 2.3e-127 460.7 794 87.2
Glyma.13G221600 Glycine max HOM05D005337 ORTHO05D006567 3.9e-119 433.3 795 85.7
Psat3g019680 Pisum sativum HOM05D005337 ORTHO05D006567 1.9e-105 387.9 788 85.8
TPR.G4722 Trifolium pratense HOM05D005337 ORTHO05D006567 1.3e-103 381.7 799 85.0
Lj6g0017822 Lotus japonicus HOM05D005337 ORTHO05D006567 5.8e-99 366.3 791 85.8
Medtr2g018550 Medicago truncatula HOM05D005337 ORTHO05D006567 1.6e-96 358.2 789 84.7
arahy.Tifrunner.gnm1.ann1.RN8PQ8 Arachis hypogaea HOM05D005337 ORTHO05D006567 1.5e-75 288.5 690 86.1
arahy.Tifrunner.gnm1.ann1.WGPX7I Arachis hypogaea HOM05D005337 ORTHO05D006567 1.5e-75 288.5 690 86.1
arahy.Tifrunner.gnm1.ann1.QR7D30 Arachis hypogaea HOM05D005337 ORTHO05D006567 5.9e-75 286.6 679 87.3
CiPaw.09G119800 Carya illinoinensis HOM05D005337 ORTHO05D006567 3.1e-68 264.2 675 88.9
QL05p055125 Quercus lobata HOM05D005337 ORTHO05D006567 1.2e-67 262.3 295 79.7
Ciclev10014263m.g Citrus clementina HOM05D005337 ORTHO05D006567 2.0e-67 261.5 702 81.6
TWI73G0840 Tripterygium wilfordii HOM05D005337 ORTHO05D006567 2.2e-66 258.1 675 88.7
Gohir.D10G045100 Gossypium hirsutum HOM05D005337 ORTHO05D006567 3.2e-65 254.2 804 76.6
Gohir.A10G043900 Gossypium hirsutum HOM05D005337 ORTHO05D006567 1.2e-64 252.3 324 75.6
Gorai.011G048000 Gossypium raimondii HOM05D005337 ORTHO05D006567 2.1e-64 251.5 724 82.5
Actinidia13442 Actinidia chinensis HOM05D005337 ORTHO05D006567 2.3e-63 248.1 322 73.6
Lj2C569T6 Lonicera japonica HOM05D005337 ORTHO05D006567 4.4e-62 243.8 333 65.8
Eucgr.E02454 Eucalyptus grandis HOM05D005337 ORTHO05D006567 9.7e-62 242.7 718 75.8
Atru.BG.302.p Acer truncatum HOM05D005337 ORTHO05D006567 1.7e-61 241.9 279 63.8
DCAR_004624 Daucus carota HOM05D005337 ORTHO05D000307 8.2e-61 239.6 293 69.6
CSS0008957 Camellia sinensis var. sinensis HOM05D005337 ORTHO05D006567 3.1e-60 237.7 393 65.9
TAR624G0614 Trochodendron aralioides HOM05D005337 ORTHO05D006567 3.5e-59 234.2 678 82.2
TAR624G0918 Trochodendron aralioides HOM05D005337 ORTHO05D006567 5.9e-59 233.4 298 70.8
FAN25G3288 Fragaria x ananassa HOM05D005337 ORTHO05D006567 8.5e-58 229.6 710 80.1
Migut.M00881 Erythranthe guttata HOM05D005337 ORTHO05D006567 1.1e-57 229.2 357 57.4
COL.COLO4_31011 Corchorus olitorius HOM05D005337 ORTHO05D006567 1.9e-57 228.4 167 67.7
Cc11_g05070 Coffea canephora HOM05D005337 ORTHO05D006567 2.5e-57 228.0 757 78.9
THA.LOC104820664 Tarenaya hassleriana HOM05D005337 ORTHO05D006567 3.2e-57 227.6 310 75.8
Cfa000901 Carpinus fangiana HOM05D005337 ORTHO05D006567 9.4e-57 226.1 138 78.3
Haze_05675 Corylus avellana HOM05D005337 ORTHO05D006567 9.4e-57 226.1 138 78.3
Dinv21523 Davidia involucrata HOM05D005337 ORTHO05D006567 1.2e-56 225.7 173 68.8
Nitab4.5_0000315g0050 Nicotiana tabacum HOM05D005337 ORTHO05D006567 1.2e-56 225.7 331 64.0
Prupe.4G085500 Prunus persica HOM05D005337 ORTHO05D006567 1.6e-56 225.3 238 55.0
MD10G1258300 Malus domestica HOM05D005337 ORTHO05D006567 2.7e-56 224.6 790 74.9
Aa31LG6G5450 Aethionema arabicum HOM05D005337 ORTHO05D006567 4.7e-56 223.8 315 74.6
PSO384G4021 Papaver somniferum HOM05D005337 ORTHO05D006567 6.1e-56 223.4 322 64.3
BraA09t39143Z Brassica rapa HOM05D005337 ORTHO05D006567 1.0e-55 222.6 309 76.1
Peaxi162Scf00045g00242 Petunia axillaris HOM05D005337 ORTHO05D006567 1.0e-55 222.6 361 65.7
Nitab4.5_0002071g0050 Nicotiana tabacum HOM05D005337 ORTHO05D006567 1.4e-55 222.2 355 61.1
FvH4_3g05050 Fragaria vesca HOM05D005337 ORTHO05D006567 1.8e-55 221.9 710 80.0
FAN21G3303 Fragaria x ananassa HOM05D005337 ORTHO05D006567 1.8e-55 221.9 324 64.8
Manes.01G172900 Manihot esculenta HOM05D005337 ORTHO05D006567 2.3e-55 221.5 758 69.5
A09p36160 Brassica napus HOM05D005337 ORTHO05D006567 3.0e-55 221.1 309 75.7
Nn3g20334 Nelumbo nucifera HOM05D005337 ORTHO05D006567 3.0e-55 221.1 168 66.7
Duzib235G0011 Durio zibethinus HOM05D005337 ORTHO05D006567 4.0e-55 220.7 165 67.3
MBI18_g11220_MAGBIO Magnolia biondii HOM05D005337 ORTHO05D006567 4.0e-55 220.7 289 79.6
FAN11G3121 Fragaria x ananassa HOM05D005337 ORTHO05D006567 5.2e-55 220.3 710 80.0
MSTRG.7512 Avicennia marina HOM05D005337 ORTHO05D006567 6.8e-55 219.9 325 62.5
Thecc.06G144500 Theobroma cacao HOM05D005337 ORTHO05D006567 1.5e-54 218.8 308 75.0
MELO3C007107.2 Cucumis melo HOM05D005337 ORTHO05D006567 5.7e-54 216.9 709 75.9
Aqoxy6G00107 Aquilegia oxysepala HOM05D005337 ORTHO05D006567 7.5e-54 216.5 311 56.3
FAN16G3117 Fragaria x ananassa HOM05D005337 ORTHO05D006567 1.7e-53 215.3 710 79.6
Rhsim09G0051200 Rhododendron simsii HOM05D005337 ORTHO05D006567 4.8e-53 213.8 293 66.9
Hund17688 Selenicereus undatus HOM05D005337 ORTHO05D006567 4.8e-53 213.8 162 64.8
ClCG01G024880 Citrullus lanatus HOM05D005337 ORTHO05D006567 1.4e-52 212.2 681 76.5
Sc05g0006000 Simmondsia chinensis HOM05D005337 ORTHO05D006567 3.1e-52 211.1 156 67.3
CAN.G36.25 Capsicum annuum HOM05D005337 ORTHO05D006567 4.1e-52 210.7 337 60.5
PGR035G0002 Punica granatum HOM05D005337 ORTHO05D006567 4.1e-52 210.7 286 79.7
Sp1g26130 Schrenkiella parvula HOM05D005337 ORTHO05D006567 5.4e-52 210.3 155 67.1
Sed0025020 Sechium edule HOM05D005337 ORTHO05D006567 5.4e-52 210.3 299 65.2
PGSC0003DMG400002287 Solanum tuberosum HOM05D005337 ORTHO05D006567 1.6e-51 208.8 326 61.0
Cfa000900 Carpinus fangiana HOM05D005337 ORTHO05D006567 2.0e-51 208.4 404 62.1
CsaV3_6G052010 Cucumis sativus L. HOM05D005337 ORTHO05D006567 7.7e-51 206.5 709 74.6
Thhalv10006807m.g Eutrema salsugineum HOM05D005337 ORTHO05D006567 7.7e-51 206.5 155 66.5
QL07p034390 Quercus lobata HOM05D005337 ORTHO05D006567 1.3e-50 205.7 319 64.9
AL1G44240 Arabidopsis lyrata HOM05D005337 ORTHO05D006567 1.7e-50 205.3 164 64.0
BcaC05g27061 Brassica carinata HOM05D005337 ORTHO05D006567 1.7e-50 205.3 165 64.2
BolC5t31652H Brassica oleracea HOM05D005337 ORTHO05D006567 1.7e-50 205.3 165 64.2
C05p29200 Brassica napus HOM05D005337 ORTHO05D006567 3.8e-50 204.1 165 64.2
CARHR029680 Cardamine hirsuta HOM05D005337 ORTHO05D006567 5.0e-50 203.8 204 56.4
RcHm_v2.0_Chr3g0490541 Rosa chinensis HOM05D005337 ORTHO05D006567 8.5e-50 203.0 124 77.4
Carub.0001s2852 Capsella rubella HOM05D005337 ORTHO05D006567 1.5e-49 202.2 170 62.9
SalBow8G2351 Salvia bowleyana HOM05D005337 ORTHO05D006567 1.5e-49 202.2 186 57.5
CANSAT35G0686 Cannabis sativa HOM05D005337 ORTHO05D006567 1.9e-49 201.8 140 69.3
CDE02G1473 Ceratophyllum demersum HOM05D005337 ORTHO05D006567 1.9e-49 201.8 323 69.7
AUR62017465 Chenopodium quinoa HOM05D005337 ORTHO05D006567 1.9e-49 201.8 182 56.0
Sopen08g008640 Solanum pennellii HOM05D005337 ORTHO05D006567 1.9e-49 201.8 321 63.6
Rhsim09G0050900 Rhododendron simsii HOM05D005337 ORTHO05D006567 4.2e-49 200.7 281 68.7
GSVIVG01021547001 Vitis vinifera HOM05D005337 ORTHO05D006567 4.2e-49 200.7 391 54.5
Solyc08g023490.4 Solanum lycopersicum HOM05D005337 ORTHO05D006567 5.5e-49 200.3 317 63.4
AT1G30290 Arabidopsis thaliana HOM05D005337 ORTHO05D006567 7.2e-49 199.9 248 49.2
Potri.011G082300 Populus trichocarpa HOM05D005337 ORTHO05D006567 7.2e-49 199.9 229 50.2
Ah.01g015050 Amaranthus hybridus HOM05D005337 ORTHO05D006567 1.4e-47 195.7 186 52.7
BcaB07g32639 Brassica carinata HOM05D005337 ORTHO05D006567 1.8e-47 195.3 165 61.2
BcaC05g27058 Brassica carinata HOM05D005337 ORTHO05D006567 3.0e-47 194.5 165 61.8
Cpa.g.sc17.49 Carica papaya HOM05D005337 ORTHO05D006567 3.0e-47 194.5 632 85.0
AUR62025016 Chenopodium quinoa HOM05D005337 ORTHO05D006567 3.0e-47 194.5 170 56.5
BolC5t31647H Brassica oleracea HOM05D005337 ORTHO05D006567 4.0e-47 194.1 165 61.8
EL10Ac9g22478 Beta vulgaris HOM05D005337 ORTHO05D006567 8.8e-47 193.0 189 52.9
C05p29160 Brassica napus HOM05D005337 ORTHO05D006567 3.4e-46 191.0 165 61.2
HanXRQChr04g0116581 Helianthus annuus HOM05D005337 ORTHO05D006567 2.2e-45 188.3 307 69.4
Sabra11G0065300 Salix brachista HOM05D005337 ORTHO05D006567 2.2e-45 188.3 157 62.4
vmacro03433 Vaccinium macrocarpon HOM05D005337 ORTHO05D006567 2.8e-45 188.0 184 53.3
ATR1098G077 Amborella trichopoda HOM05D005337 ORTHO05D006567 1.0e-42 179.5 353 62.3
SGA_v2.0_scaffold223G42824 Striga asiatica HOM05D005337 ORTHO05D006567 1.3e-42 179.1 146 63.0
CDE05G0694 Ceratophyllum demersum HOM05D005337 ORTHO05D006567 1.7e-42 178.7 214 44.4
HPP92_001622 Vanilla planifolia HOM05D005337 ORTHO05D006567 1.1e-41 176.0 166 55.4
Ca_00508_v3 Cicer arietinum L. HOM05D005337 ORTHO05D006567 1.5e-41 175.6 588 93.0
SHI24905 Sapria himalayana HOM05D005337 ORTHO05D006567 4.0e-39 167.5 168 52.4
Os12g0615600 Oryza sativa ssp. japonica HOM05D005337 ORTHO05D006567 2.6e-38 164.9 281 63.0
Zm00001eb134800 Zea mays HOM05D005337 ORTHO05D006567 4.9e-37 160.6 281 62.6
Lsat_1_v5_gn_7_27480 Lactuca sativa HOM05D005337 ORTHO05D006567 2.7e-35 154.8 118 61.9
Nitab4.5_0000258g0100 Nicotiana tabacum HOM05D005337 ORTHO05D006567 4.3e-33 147.5 329 54.4
Oeu032720.1 Olea europaea HOM05D005337 ORTHO05D006567 6.2e-32 143.7 169 47.9
Lalb_Chr15g0086601 Lupinus albus HOM05D005337 ORTHO05D006567 3.7e-29 134.4 111 82.0
Rhsim13G0117400 Rhododendron simsii HOM05D005337 ORTHO05D006567 3.0e-26 124.8 293 55.6
Sc05g0005990 Simmondsia chinensis HOM05D005337 ORTHO05D006567 5.6e-25 120.6 80 71.2
TAR624G0810 Trochodendron aralioides HOM05D005337 ORTHO05D006567 2.3e-23 115.2 106 70.8
RcHm_v2.0_Chr5g0014911 Rosa chinensis HOM05D005337 ORTHO05D006567 5.2e-23 114.0 81 66.7
RcHm_v2.0_Chr3g0490551 Rosa chinensis HOM05D005337 ORTHO05D006567 4.9e-21 107.5 81 64.2
FAN21G0118 Fragaria x ananassa HOM05D005337 ORTHO05D006567 6.4e-21 107.1 75 69.3
A09p36200 Brassica napus HOM05D005337 ORTHO05D006567 1.9e-20 105.5 77 67.5
CAN.G36.12 Capsicum annuum HOM05D005337 ORTHO05D006567 1.9e-20 105.5 77 64.9
BolC5t31646H Brassica oleracea HOM05D005337 ORTHO05D006567 7.1e-20 103.6 75 68.0
ECA236G3236 Erigeron canadensis HOM05D005337 ORTHO05D006567 1.2e-19 102.8 107 51.4
arahy.Tifrunner.gnm1.ann1.W21Z3V Arachis hypogaea HOM05D005337 ORTHO05D006567 3.5e-19 101.3 138 43.5
unitig_37.g12089 Utricularia gibba HOM05D005337 ORTHO05D006567 4.6e-19 100.9 107 52.3
arahy.Tifrunner.gnm1.ann1.1U5Z8B Arachis hypogaea HOM05D005337 ORTHO05D006567 1.7e-18 99.0 73 68.5
Ca_18255_v3 Cicer arietinum L. HOM05D000068 ORTHO05D006567 5.1e-18 97.4 61 75.4
Atru.chr10.1089 Acer truncatum HOM05D005337 ORTHO05D006567 6.8e-15 87.0 65 69.2
SEGI_37079 Sequoiadendron giganteum HOM05D005337 ORTHO05D006567 2.0e-14 85.5 76 52.6
MD05G1279600 Malus domestica HOM05D005337 ORTHO05D006567 3.4e-14 84.7 47 87.2
Medtr2g018580 Medicago truncatula HOM05D005337 ORTHO05D006567 7.6e-14 83.6 59 71.2
BraA09t39145Z Brassica rapa HOM05D005337 ORTHO05D006567 2.2e-13 82.0 58 67.2
SEGI_28981 Sequoiadendron giganteum HOM05D005337 ORTHO05D006567 1.1e-12 79.7 110 43.6
Actinidia07466 Actinidia chinensis HOM05D005337 ORTHO05D006567 2.7e-11 75.1 49 67.3
arahy.Tifrunner.gnm1.ann1.S6HMEC Arachis hypogaea HOM05D005337 ORTHO05D006567 1.3e-10 72.8 82 47.6
SEGI_04521 Sequoiadendron giganteum HOM05D005337 ORTHO05D009920 3.3e-09 68.2 107 29.9
CAN.G771.41 Capsicum annuum HOM05D006740 ORTHO05D008571 7.3e-09 67.0 110 28.2
MBI01_g30450_MAGBIO Magnolia biondii HOM05D006926 ORTHO05D008863 1.6e-08 65.9 96 34.4
SEGI_16657 Sequoiadendron giganteum HOM05D005337 ORTHO05D023551 1.6e-08 65.9 143 29.4
Peaxi162Scf00046g00155 Petunia axillaris HOM05D006740 ORTHO05D008571 2.1e-08 65.5 110 29.1
CSS0040550 Camellia sinensis var. sinensis HOM05D006926 ORTHO05D008863 4.7e-08 64.3 154 27.3
Dinv32060 Davidia involucrata HOM05D005973 ORTHO05D007285 4.7e-08 64.3 116 31.0
Lj2C113T11 Lonicera japonica HOM05D006740 ORTHO05D008571 4.7e-08 64.3 138 27.5
Solyc12g019290.1 Solanum lycopersicum HOM05D006740 ORTHO05D008571 6.2e-08 63.9 110 27.3
Sopen12g009600 Solanum pennellii HOM05D006740 ORTHO05D008571 6.2e-08 63.9 110 27.3
PGSC0003DMG400020392 Solanum tuberosum HOM05D006740 ORTHO05D008571 6.2e-08 63.9 110 27.3
TAR623G1644 Trochodendron aralioides HOM05D005973 ORTHO05D007285 6.2e-08 63.9 116 31.0
Aqoxy2G00263 Aquilegia oxysepala HOM05D005973 ORTHO05D007285 8.1e-08 63.5 116 31.0
Nitab4.5_0003215g0040 Nicotiana tabacum HOM05D006740 ORTHO05D008571 1.1e-07 63.2 110 27.3
AagrBONN_evm.TU.Sc2ySwM_362.2678__2679 Anthoceros agrestis HOM05D006749 ORTHO05D008352 1.4e-07 62.8 100 39.0
DCAR_017698 Daucus carota HOM05D006740 ORTHO05D008571 1.4e-07 62.8 110 28.2
Lj7A578T58 Lonicera japonica HOM05D005973 ORTHO05D007285 1.4e-07 62.8 121 30.6
TAR623G1677 Trochodendron aralioides HOM05D005973 ORTHO05D007285 1.8e-07 62.4 116 30.2
Dinv05038 Davidia involucrata HOM05D005973 ORTHO05D007285 3.1e-07 61.6 121 29.8
Glyma.02G298900 Glycine max HOM05D006926 ORTHO05D008863 3.1e-07 61.6 116 30.2
Nn1g09562 Nelumbo nucifera HOM05D006926 ORTHO05D008863 4.0e-07 61.2 115 27.8
Aa31LG5G22560 Aethionema arabicum HOM05D006740 ORTHO05D008571 5.2e-07 60.8 137 27.7
Hma1.2p1_0579F.1_g182710 Hydrangea macrophylla HOM05D005973 ORTHO05D007285 5.2e-07 60.8 116 30.2
AagrBONN_evm.TU.Sc2ySwM_344.1991 Anthoceros agrestis HOM05D004079 ORTHO05D008352 6.9e-07 60.5 137 29.9
CANSAT78G1021 Cannabis sativa HOM05D006926 ORTHO05D008863 8.9e-07 60.1 123 30.1
Dinv35763 Davidia involucrata HOM05D006740 ORTHO05D008571 1.2e-06 59.7 132 25.0
ECA233G5048 Erigeron canadensis HOM05D006926 ORTHO05D008863 1.5e-06 59.3 159 27.0
Lsat_1_v5_gn_6_30921 Lactuca sativa HOM05D006740 ORTHO05D008571 1.5e-06 59.3 110 27.3
PSO339G1208 Papaver somniferum HOM05D005973 ORTHO05D007285 1.5e-06 59.3 150 28.0
PSO384G2338 Papaver somniferum HOM05D005973 ORTHO05D007285 1.5e-06 59.3 150 28.0
Thecc.04G285300 Theobroma cacao HOM05D006926 ORTHO05D008863 2.0e-06 58.9 116 31.9
CDE05G3024 Ceratophyllum demersum HOM05D006740 ORTHO05D008571 2.6e-06 58.5 125 29.6
Migut.J00539 Erythranthe guttata HOM05D006740 ORTHO05D008571 2.6e-06 58.5 110 25.5
MD08G1066700 Malus domestica HOM05D006926 ORTHO05D008863 2.6e-06 58.5 117 31.6
QL06p009008 Quercus lobata HOM05D006926 ORTHO05D008863 2.6e-06 58.5 140 29.3
Sed0000576 Sechium edule HOM05D006926 ORTHO05D008863 2.6e-06 58.5 128 29.7
COL.COLO4_05681 Corchorus olitorius HOM05D006740 ORTHO05D008571 3.4e-06 58.2 122 25.4
Hma1.2p1_0579F.1_g182720 Hydrangea macrophylla HOM05D005973 ORTHO05D007285 3.4e-06 58.2 120 30.0
Nn1g00512 Nelumbo nucifera HOM05D006740 ORTHO05D008571 3.4e-06 58.2 122 31.1
Nn4g25527 Nelumbo nucifera HOM05D007409 ORTHO05D009264 3.4e-06 58.2 101 32.7
vmacro19755 Vaccinium macrocarpon HOM05D005973 ORTHO05D007285 3.4e-06 58.2 104 31.7
TWI15G0380 Tripterygium wilfordii HOM05D004079 ORTHO05D005437 4.4e-06 57.8 118 32.2
TAR623G1146 Trochodendron aralioides HOM05D005973 ORTHO05D007285 4.4e-06 57.8 116 29.3
CAN.G999.30 Capsicum annuum HOM05D004079 ORTHO05D005437 5.8e-06 57.4 87 36.8
CSS0044827 Camellia sinensis var. sinensis HOM05D006740 ORTHO05D008571 7.6e-06 57.0 99 27.3
ClCG06G016440 Citrullus lanatus HOM05D004079 ORTHO05D005437 7.6e-06 57.0 122 31.1
DCAR_025034 Daucus carota HOM05D005973 ORTHO05D007285 7.6e-06 57.0 121 27.3
Nn5g27420 Nelumbo nucifera HOM05D006740 ORTHO05D008571 7.6e-06 57.0 121 30.6
Sopen03g032430 Solanum pennellii HOM05D004079 ORTHO05D005437 7.6e-06 57.0 100 34.0
MD15G1385700 Malus domestica HOM05D006740 ORTHO05D008571 9.9e-06 56.6 110 25.5


User provided reference genes

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