Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.006G138500 Phaseolus vulgaris HOM05D005493 ORTHO05D007154 9.5e-179 630.2 343 100.0
VMungo0540G1721 Vigna mungo HOM05D005493 ORTHO05D007154 3.6e-154 548.5 318 90.6
Glyma.09G014500 Glycine max HOM05D005493 ORTHO05D007154 1.2e-152 543.5 343 86.3
Glyma.15G120100 Glycine max HOM05D005493 ORTHO05D007154 6.2e-146 521.2 346 82.7
Lj6g0009296 Lotus japonicus HOM05D005493 ORTHO05D007154 1.6e-122 443.4 339 73.5
TPR.G17550 Trifolium pratense HOM05D005493 ORTHO05D007154 5.5e-118 428.3 334 70.1
Psat1g172480 Pisum sativum HOM05D005493 ORTHO05D007154 1.6e-117 426.8 341 70.7
Medtr2g027010 Medicago truncatula HOM05D005493 ORTHO05D007154 8.2e-114 414.5 335 66.9
CiPaw.10G081900 Carya illinoinensis HOM05D005493 ORTHO05D007154 2.2e-111 406.4 322 70.2
TAR626G1878 Trochodendron aralioides HOM05D005493 ORTHO05D007154 3.8e-111 405.6 324 65.4
CSS0047473 Camellia sinensis var. sinensis HOM05D005493 ORTHO05D007154 2.1e-109 399.8 316 69.3
TWI63G0139 Tripterygium wilfordii HOM05D005493 ORTHO05D007154 1.8e-108 396.7 318 64.8
Lalb_Chr18g0057311 Lupinus albus HOM05D005493 ORTHO05D007154 3.0e-108 396.0 325 65.8
Duzib192G0504 Durio zibethinus HOM05D005493 ORTHO05D007154 1.5e-107 393.7 304 65.8
Thecc.06G236400 Theobroma cacao HOM05D005493 ORTHO05D007154 4.3e-107 392.1 326 64.7
Duzib160G0837 Durio zibethinus HOM05D005493 ORTHO05D007154 7.4e-107 391.3 312 67.3
Manes.13G088900 Manihot esculenta HOM05D005493 ORTHO05D007154 7.4e-107 391.3 334 64.1
ClCG01G010900 Citrullus lanatus HOM05D005493 ORTHO05D007154 4.8e-106 388.7 325 63.1
CsaV3_1G015560 Cucumis sativus L. HOM05D005493 ORTHO05D007154 6.3e-106 388.3 309 64.4
TWI38G1153 Tripterygium wilfordii HOM05D005493 ORTHO05D007154 1.1e-105 387.5 323 63.2
arahy.Tifrunner.gnm1.ann1.N8508C Arachis hypogaea HOM05D005493 ORTHO05D007154 2.4e-105 386.3 347 64.0
Actinidia39254 Actinidia chinensis HOM05D005493 ORTHO05D007154 5.3e-105 385.2 314 64.3
Hma1.2p1_1175F.1_g264030 Hydrangea macrophylla HOM05D005493 ORTHO05D007154 5.3e-105 385.2 300 67.0
Gohir.D05G178600 Gossypium hirsutum HOM05D005493 ORTHO05D007154 1.5e-104 383.6 335 65.1
Gorai.009G184000 Gossypium raimondii HOM05D005493 ORTHO05D007154 2.0e-104 383.3 335 65.4
Gohir.A05G175500 Gossypium hirsutum HOM05D005493 ORTHO05D007154 5.9e-104 381.7 305 67.5
MELO3C026067.2 Cucumis melo HOM05D005493 ORTHO05D007154 7.7e-104 381.3 320 62.8
Rhsim13G0140700 Rhododendron simsii HOM05D005493 ORTHO05D007154 1.3e-103 380.6 327 64.2
Atru.chr1.2258 Acer truncatum HOM05D005493 ORTHO05D007154 1.7e-103 380.2 290 69.7
Dinv02850 Davidia involucrata HOM05D005493 ORTHO05D007154 3.8e-103 379.0 274 70.8
THA.LOC104806738 Tarenaya hassleriana HOM05D005493 ORTHO05D007154 1.4e-102 377.1 334 63.2
CAN.G1156.21 Capsicum annuum HOM05D005493 ORTHO05D007154 4.2e-102 375.6 289 66.1
Sed0001140 Sechium edule HOM05D005493 ORTHO05D007154 4.2e-102 375.6 311 61.7
Hund29945 Selenicereus undatus HOM05D005493 ORTHO05D007154 7.2e-102 374.8 296 67.6
DCAR_006316 Daucus carota HOM05D005493 ORTHO05D007154 1.2e-101 374.0 298 63.1
Lj1A1246T23 Lonicera japonica HOM05D005493 ORTHO05D007154 2.7e-101 372.9 303 67.3
Cc09_g00320 Coffea canephora HOM05D005493 ORTHO05D007154 3.6e-101 372.5 315 62.5
Lsat_1_v5_gn_4_63901 Lactuca sativa HOM05D005493 ORTHO05D007154 3.6e-101 372.5 311 62.7
PSO339G5884 Papaver somniferum HOM05D005493 ORTHO05D007154 1.0e-100 370.9 315 64.8
AUR62033011 Chenopodium quinoa HOM05D005493 ORTHO05D007154 1.4e-100 370.5 322 63.7
arahy.Tifrunner.gnm1.ann1.2D6L40 Arachis hypogaea HOM05D005493 ORTHO05D007154 5.1e-100 368.6 347 61.4
SalBow8G5358 Salvia bowleyana HOM05D005493 ORTHO05D007154 6.7e-100 368.2 324 60.2
Potri.016G005500 Populus trichocarpa HOM05D005493 ORTHO05D007154 8.8e-100 367.9 316 65.5
PGSC0003DMG400013365 Solanum tuberosum HOM05D005493 ORTHO05D007154 1.1e-99 367.5 314 62.7
Cpa.g.sc27.228 Carica papaya HOM05D005493 ORTHO05D007154 4.3e-99 365.5 297 63.6
EL10Ac8g19414 Beta vulgaris HOM05D005493 ORTHO05D007154 9.7e-99 364.4 307 64.5
Ah.11g043160 Amaranthus hybridus HOM05D005493 ORTHO05D007154 1.3e-98 364.0 315 64.1
HanXRQChr16g0515751 Helianthus annuus HOM05D005493 ORTHO05D007154 6.3e-98 361.7 321 61.7
Aa31sc219G70 Aethionema arabicum HOM05D005493 ORTHO05D007154 1.4e-97 360.5 301 67.4
Eucgr.E03858 Eucalyptus grandis HOM05D005493 ORTHO05D007154 4.1e-97 359.0 304 65.8
PGR042G0366 Punica granatum HOM05D005493 ORTHO05D007154 1.7e-95 353.6 316 61.7
COL.COLO4_31918 Corchorus olitorius HOM05D005493 ORTHO05D007154 2.2e-95 353.2 263 67.7
QL05p067786 Quercus lobata HOM05D005493 ORTHO05D007154 5.0e-95 352.1 339 61.7
SGA_v2.0_scaffold7G03695 Striga asiatica HOM05D005493 ORTHO05D007154 1.4e-94 350.5 323 60.1
Potri.006G004900 Populus trichocarpa HOM05D005493 ORTHO05D007154 1.9e-94 350.1 319 62.4
Nitab4.5_0001296g0130 Nicotiana tabacum HOM05D005493 ORTHO05D007154 4.2e-94 349.0 292 66.4
Cfa000035 Carpinus fangiana HOM05D005493 ORTHO05D007154 2.7e-93 346.3 226 74.3
ECA232G3574 Erigeron canadensis HOM05D005493 ORTHO05D007154 7.9e-93 344.7 298 64.8
Haze_07019 Corylus avellana HOM05D005493 ORTHO05D007154 3.9e-92 342.4 226 74.3
Aqoxy1G04259 Aquilegia oxysepala HOM05D005493 ORTHO05D007154 2.0e-91 340.1 324 59.6
CDE05G0023 Ceratophyllum demersum HOM05D005493 ORTHO05D007154 7.4e-91 338.2 309 57.9
Sopen11g007500 Solanum pennellii HOM05D005493 ORTHO05D007154 2.2e-90 336.7 255 65.5
MSTRG.16053 Avicennia marina HOM05D005493 ORTHO05D007154 2.8e-90 336.3 289 62.3
Ca_00763_v3 Cicer arietinum L. HOM05D005493 ORTHO05D007154 2.8e-90 336.3 269 72.1
vmacro03608 Vaccinium macrocarpon HOM05D005493 ORTHO05D007154 2.8e-90 336.3 375 53.3
BcaB07g30764 Brassica carinata HOM05D005493 ORTHO05D007154 3.7e-90 335.9 309 63.1
Solyc11g012760.2 Solanum lycopersicum HOM05D005493 ORTHO05D007154 3.7e-90 335.9 252 67.5
CANSAT56G4202 Cannabis sativa HOM05D005493 ORTHO05D007154 8.2e-90 334.7 298 62.4
Zm00001eb253250 Zea mays HOM05D005493 ORTHO05D007154 8.2e-90 334.7 314 60.5
SGA_v2.0_scaffold186G40127 Striga asiatica HOM05D005493 ORTHO05D007154 1.4e-89 334.0 322 57.8
Peaxi162Scf00827g00517 Petunia axillaris HOM05D005493 ORTHO05D007154 4.1e-89 332.4 245 68.6
C07p31340 Brassica napus HOM05D005493 ORTHO05D007154 1.2e-88 330.9 329 61.1
Nn1g07522 Nelumbo nucifera HOM05D005493 ORTHO05D007154 2.6e-88 329.7 263 65.0
Sp2g12390 Schrenkiella parvula HOM05D005493 ORTHO05D007154 2.6e-88 329.7 315 62.9
A06p44860 Brassica napus HOM05D005493 ORTHO05D007154 6.5e-87 325.1 339 59.3
Rhsim13G0140600 Rhododendron simsii HOM05D005493 ORTHO05D007154 8.5e-87 324.7 323 60.7
Ciclev10015889m.g Citrus clementina HOM05D005493 ORTHO05D007154 1.1e-86 324.3 318 55.7
BraA06t27358Z Brassica rapa HOM05D005493 ORTHO05D007154 1.9e-86 323.6 339 59.0
Dinv15338 Davidia involucrata HOM05D005493 ORTHO05D007154 5.5e-86 322.0 263 68.8
C09p29920 Brassica napus HOM05D005493 ORTHO05D007154 6.1e-85 318.5 312 60.3
BcaC04g21607 Brassica carinata HOM05D005493 ORTHO05D007154 1.4e-84 317.4 312 59.9
BolC9t55855H Brassica oleracea HOM05D005493 ORTHO05D007154 1.4e-84 317.4 312 60.3
Carub.0008s0010 Capsella rubella HOM05D005493 ORTHO05D007154 1.4e-84 317.4 320 60.0
Migut.M01444 Erythranthe guttata HOM05D005493 ORTHO05D007154 5.2e-84 315.5 301 60.5
Sc17g0007990 Simmondsia chinensis HOM05D005493 ORTHO05D007154 1.5e-83 313.9 247 68.8
A09p23180 Brassica napus HOM05D005493 ORTHO05D007154 2.6e-83 313.2 315 59.0
BraA09t37921Z Brassica rapa HOM05D005493 ORTHO05D007154 2.6e-83 313.2 315 59.0
FAN28G0158 Fragaria x ananassa HOM05D005493 ORTHO05D007154 3.3e-83 312.8 293 58.4
Thhalv10000943m.g Eutrema salsugineum HOM05D005493 ORTHO05D007154 5.7e-83 312.0 320 59.7
CARHR173630 Cardamine hirsuta HOM05D005493 ORTHO05D007154 7.4e-83 311.6 346 54.3
MD10G1339200 Malus domestica HOM05D005493 ORTHO05D007154 8.2e-82 308.1 299 56.9
Prupe.4G003700 Prunus persica HOM05D005493 ORTHO05D007154 1.8e-81 307.0 227 65.2
Oeu025962.1 Olea europaea HOM05D005493 ORTHO05D007154 4.5e-80 302.4 236 64.0
CDE05G0194 Ceratophyllum demersum HOM05D005493 ORTHO05D007154 1.3e-79 300.8 309 53.4
MSTRG.7128 Avicennia marina HOM05D005493 ORTHO05D007154 5.0e-79 298.9 322 54.7
BcaC06g34232 Brassica carinata HOM05D005493 ORTHO05D007154 5.0e-79 298.9 314 59.6
MBI14_g10146_MAGBIO Magnolia biondii HOM05D005493 ORTHO05D007154 8.5e-79 298.1 289 58.1
ATR0751G138 Amborella trichopoda HOM05D005493 ORTHO05D007154 7.2e-78 295.0 299 54.8
Sabra06G0004100 Salix brachista HOM05D005493 ORTHO05D007154 2.1e-77 293.5 265 58.1
RcHm_v2.0_Chr2g0120371 Rosa chinensis HOM05D005493 ORTHO05D007154 1.5e-75 287.3 285 56.8
FAN23G1811 Fragaria x ananassa HOM05D005493 ORTHO05D007154 1.7e-74 283.9 310 53.2
FvH4_1g24140 Fragaria vesca HOM05D005493 ORTHO05D007154 2.8e-74 283.1 310 52.9
FAN19G1729 Fragaria x ananassa HOM05D005493 ORTHO05D007154 2.8e-74 283.1 310 52.9
BcaC06g31350 Brassica carinata HOM05D005493 ORTHO05D007154 8.3e-74 281.6 329 55.6
AL8G10270 Arabidopsis lyrata HOM05D005493 ORTHO05D007154 1.2e-72 277.7 317 54.3
HPP92_027483 Vanilla planifolia HOM05D005493 ORTHO05D007154 2.7e-72 276.6 233 58.4
AT5G47680 Arabidopsis thaliana HOM05D005493 ORTHO05D007154 1.3e-71 274.2 335 52.8
AUR62034063 Chenopodium quinoa HOM05D005493 ORTHO05D007154 1.4e-68 264.2 181 68.5
SEGI_02626 Sequoiadendron giganteum HOM05D005493 ORTHO05D007154 2.6e-67 260.0 300 50.0
Pp3c1_33120 Physcomitrium patens HOM05D005493 ORTHO05D007154 1.7e-66 257.3 297 48.1
BolC7t43675H Brassica oleracea HOM05D005493 ORTHO05D007154 4.8e-66 255.8 329 52.6
Mapoly0011s0174 Marchantia polymorpha HOM05D005493 ORTHO05D007154 8.9e-60 235.0 287 49.1
Pp3c2_12110 Physcomitrium patens HOM05D005493 ORTHO05D007154 2.6e-59 233.4 321 43.6
GSVIVG01002894001 Vitis vinifera HOM05D005493 ORTHO05D007154 5.9e-56 222.2 132 81.1
CBR_g3993 Chara braunii HOM05D005493 ORTHO05D007154 4.3e-54 216.1 237 47.3
Sabra16G0010400 Salix brachista HOM05D005493 ORTHO05D007154 1.6e-53 214.2 365 45.8
SMO358G0363 Selaginella moellendorffii HOM05D005493 ORTHO05D007154 1.4e-49 201.1 268 45.1
Os02g0725600 Oryza sativa ssp. japonica HOM05D005493 ORTHO05D007154 9.5e-46 188.3 123 74.8
SHI12358 Sapria himalayana HOM05D005493 ORTHO05D007154 4.7e-45 186.0 124 66.1
AagrBONN_evm.TU.Sc2ySwM_362.2751 Anthoceros agrestis HOM05D005493 ORTHO05D007154 4.1e-41 172.9 268 42.2
Actinidia11906 Actinidia chinensis HOM05D005493 ORTHO05D007154 1.6e-40 171.0 167 54.5
Zm00001eb070580 Zea mays HOM05D005493 ORTHO05D007154 1.8e-36 157.5 95 77.9
Zm00001eb264500 Zea mays HOM05D005493 ORTHO05D007154 1.8e-36 157.5 97 76.3
MCO13G503 Micromonas commoda HOM05D005493 ORTHO05D007154 9.9e-35 151.8 177 42.4
Cre06.g278500 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 2.2e-34 150.6 327 33.3
CBR_g1099 Chara braunii HOM05D000019 ORTHO05D000002 2.7e-24 117.1 266 30.5
Zm00001eb168490 Zea mays HOM05D000087 ORTHO05D011931 4.6e-24 116.3 70 78.6
PRCOL_00000725 Prasinoderma coloniale HOM05D005493 ORTHO05D007154 2.3e-23 114.0 196 34.2
unitig_37.g12178 Utricularia gibba HOM05D005493 ORTHO05D007154 7.3e-22 109.0 165 46.7
SHI50428 Sapria himalayana HOM05D005493 ORTHO05D007154 3.6e-21 106.7 125 48.0
Cfa025804 Carpinus fangiana HOM05D005493 ORTHO05D007154 9.3e-17 92.0 140 44.3
PRCOL_00003979 Prasinoderma coloniale HOM05D005493 ORTHO05D049008 1.9e-14 84.3 199 32.7
vmacro23227 Vaccinium macrocarpon HOM05D005493 ORTHO05D007154 9.6e-14 82.0 69 60.9
Cre02.g119350 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 4.0e-12 76.6 226 29.2
Cre10.g456851 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 5.8e-11 72.8 219 26.9
unitig_37.g12179 Utricularia gibba HOM05D005493 ORTHO05D007154 3.5e-08 63.5 72 55.6
MCO11G471 Micromonas commoda HOM05D050729 ORTHO05D049153 1.1e-06 58.5 104 28.8


User provided reference genes

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