Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.006G104800 Phaseolus vulgaris HOM05D004899 ORTHO05D006580 9.9e-193 676.8 387 100.0
VMungo0540G0495 Vigna mungo HOM05D004899 ORTHO05D006580 1.9e-183 646.0 387 93.8
Glyma.03G250100 Glycine max HOM05D004899 ORTHO05D006580 6.7e-173 610.9 387 91.2
Glyma.19G247700 Glycine max HOM05D004899 ORTHO05D006580 4.5e-169 598.2 387 88.6
arahy.Tifrunner.gnm1.ann1.A8VMLZ Arachis hypogaea HOM05D004899 ORTHO05D006580 1.8e-154 549.7 393 80.4
arahy.Tifrunner.gnm1.ann1.VXFY9N Arachis hypogaea HOM05D004899 ORTHO05D006580 4.1e-154 548.5 393 80.2
Ca_11390_v3 Cicer arietinum L. HOM05D004899 ORTHO05D006580 7.7e-153 544.3 387 82.2
TPR.G10414 Trifolium pratense HOM05D004899 ORTHO05D006580 1.7e-152 543.1 387 83.2
Lj1g0026343 Lotus japonicus HOM05D004899 ORTHO05D006580 2.2e-152 542.7 403 77.4
Dinv06242 Davidia involucrata HOM05D004899 ORTHO05D006580 8.8e-149 530.8 394 77.7
CSS0003371 Camellia sinensis var. sinensis HOM05D004899 ORTHO05D006580 1.2e-148 530.4 394 77.2
Manes.08G140200 Manihot esculenta HOM05D004899 ORTHO05D006580 7.5e-148 527.7 394 77.9
Lalb_Chr04g0253351 Lupinus albus HOM05D004899 ORTHO05D006580 1.3e-147 526.9 395 77.7
CANSAT54G0581 Cannabis sativa HOM05D004899 ORTHO05D006580 2.2e-147 526.2 393 75.8
CiPaw.08G118600 Carya illinoinensis HOM05D004899 ORTHO05D006580 2.8e-147 525.8 394 75.9
FvH4_6g01740 Fragaria vesca HOM05D004899 ORTHO05D006580 3.7e-147 525.4 394 75.6
FAN14G2287 Fragaria x ananassa HOM05D004899 ORTHO05D006580 3.7e-147 525.4 394 75.6
FAN14G4075 Fragaria x ananassa HOM05D004899 ORTHO05D006580 3.7e-147 525.4 394 75.6
Thecc.05G269900 Theobroma cacao HOM05D004899 ORTHO05D006580 4.8e-147 525.0 394 75.1
FAN05G0331 Fragaria x ananassa HOM05D004899 ORTHO05D006580 1.4e-146 523.5 394 75.4
FAN05G3121 Fragaria x ananassa HOM05D004899 ORTHO05D006580 1.4e-146 523.5 394 75.4
Duzib106G1539 Durio zibethinus HOM05D004899 ORTHO05D006580 1.8e-146 523.1 394 75.1
FAN09G4068 Fragaria x ananassa HOM05D004899 ORTHO05D006580 1.8e-146 523.1 394 75.6
Gohir.D11G256500 Gossypium hirsutum HOM05D004899 ORTHO05D006580 1.8e-146 523.1 393 74.8
Potri.013G047800 Populus trichocarpa HOM05D004899 ORTHO05D006580 1.8e-146 523.1 394 74.6
Rhsim09G0133700 Rhododendron simsii HOM05D004899 ORTHO05D006580 4.1e-146 521.9 394 75.1
Gorai.007G274800 Gossypium raimondii HOM05D004899 ORTHO05D006580 5.3e-146 521.5 393 74.6
Prupe.6G350900 Prunus persica HOM05D004899 ORTHO05D006580 7.0e-146 521.2 394 76.9
RcHm_v2.0_Chr3g0449481 Rosa chinensis HOM05D004899 ORTHO05D006580 9.1e-146 520.8 394 75.9
PGR142G4366 Punica granatum HOM05D004899 ORTHO05D006580 1.2e-145 520.4 394 75.6
Actinidia34758 Actinidia chinensis HOM05D004899 ORTHO05D006580 2.7e-145 519.2 394 75.9
Gohir.A11G246300 Gossypium hirsutum HOM05D004899 ORTHO05D006580 7.7e-145 517.7 394 74.4
ClCG11G010490 Citrullus lanatus HOM05D004899 ORTHO05D006580 1.7e-144 516.5 395 75.2
TWI36G0265 Tripterygium wilfordii HOM05D004899 ORTHO05D006580 2.9e-144 515.8 392 74.5
Sabra19G0032200 Salix brachista HOM05D004899 ORTHO05D006580 5.0e-144 515.0 394 75.1
GSVIVG01023441001 Vitis vinifera HOM05D004899 ORTHO05D006580 6.5e-144 514.6 396 76.3
TAR362G0172 Trochodendron aralioides HOM05D004899 ORTHO05D006580 8.5e-144 514.2 394 75.6
MD04G1231200 Malus domestica HOM05D004899 ORTHO05D006580 1.1e-143 513.8 395 76.7
Eucgr.B02154 Eucalyptus grandis HOM05D004899 ORTHO05D006580 3.2e-143 512.3 398 75.1
QL03p029772 Quercus lobata HOM05D004899 ORTHO05D006580 3.2e-143 512.3 409 73.1
MELO3C008694.2 Cucumis melo HOM05D004899 ORTHO05D006580 4.2e-143 511.9 395 74.4
PGSC0003DMG400023503 Solanum tuberosum HOM05D004899 ORTHO05D006580 4.2e-143 511.9 394 74.4
Solyc05g054950.2 Solanum lycopersicum HOM05D004899 ORTHO05D006580 7.2e-143 511.1 394 74.4
CsaV3_2G009880 Cucumis sativus L. HOM05D004899 ORTHO05D006580 9.4e-143 510.8 395 74.4
MBI07_g12932_MAGBIO Magnolia biondii HOM05D004899 ORTHO05D006580 9.4e-143 510.8 395 73.9
CAN.G1465.15 Capsicum annuum HOM05D004899 ORTHO05D006580 2.7e-142 509.2 394 74.4
Potri.019G020000 Populus trichocarpa HOM05D004899 ORTHO05D006580 2.7e-142 509.2 394 73.4
Sopen05g033410 Solanum pennellii HOM05D004899 ORTHO05D006580 6.1e-142 508.1 394 74.1
Nn1g02931 Nelumbo nucifera HOM05D004899 ORTHO05D006580 8.0e-142 507.7 394 74.1
MSTRG.8229 Avicennia marina HOM05D004899 ORTHO05D006580 1.0e-141 507.3 394 74.4
Peaxi162Scf00015g02911 Petunia axillaris HOM05D004899 ORTHO05D006580 1.8e-141 506.5 394 73.4
Sed0011238 Sechium edule HOM05D004899 ORTHO05D006580 1.5e-140 503.4 398 73.6
HanXRQChr08g0216941 Helianthus annuus HOM05D004899 ORTHO05D006580 5.7e-140 501.5 394 72.3
Migut.F01538 Erythranthe guttata HOM05D004899 ORTHO05D006580 1.7e-139 500.0 394 73.6
Aqoxy5G00161 Aquilegia oxysepala HOM05D004899 ORTHO05D006580 1.1e-138 497.3 392 73.7
Cc02_g08720 Coffea canephora HOM05D004899 ORTHO05D006580 1.2e-137 493.8 404 71.8
Lj2A44T81 Lonicera japonica HOM05D004899 ORTHO05D006580 2.7e-137 492.7 438 68.3
Lsat_1_v5_gn_8_25181 Lactuca sativa HOM05D004899 ORTHO05D006580 4.5e-137 491.9 390 70.0
Sc20g0000690 Simmondsia chinensis HOM05D004899 ORTHO05D006580 2.9e-136 489.2 396 69.4
ECA233G1223 Erigeron canadensis HOM05D004899 ORTHO05D006580 3.8e-136 488.8 394 68.5
SalBow6G5574 Salvia bowleyana HOM05D004899 ORTHO05D006580 2.5e-135 486.1 420 69.8
SGA_v2.0_scaffold426G51496 Striga asiatica HOM05D004899 ORTHO05D006580 3.3e-135 485.7 391 71.9
Os10g0467200 Oryza sativa ssp. japonica HOM05D004899 ORTHO05D006580 2.8e-134 482.6 395 69.4
PSO674G0057 Papaver somniferum HOM05D004899 ORTHO05D006580 3.6e-134 482.3 394 71.3
AL3G14410 Arabidopsis lyrata HOM05D004899 ORTHO05D006580 4.7e-134 481.9 394 65.2
Thhalv10020878m.g Eutrema salsugineum HOM05D004899 ORTHO05D006580 6.1e-134 481.5 396 65.2
Medtr1g116380 Medicago truncatula HOM05D004899 ORTHO05D006580 6.1e-134 481.5 365 80.8
AT3G04460 Arabidopsis thaliana HOM05D004899 ORTHO05D006580 1.4e-133 480.3 394 65.2
A05p43040 Brassica napus HOM05D004899 ORTHO05D006580 2.3e-133 479.6 393 61.3
Hund22166 Selenicereus undatus HOM05D004899 ORTHO05D006580 2.3e-133 479.6 394 68.8
Sp3g03310 Schrenkiella parvula HOM05D004899 ORTHO05D006580 3.0e-133 479.2 394 64.7
COL.COLO4_15501 Corchorus olitorius HOM05D004899 ORTHO05D006580 6.8e-133 478.0 378 72.2
Atru.chr2.1001 Acer truncatum HOM05D004899 ORTHO05D006580 8.9e-133 477.6 370 76.5
Carub.0003s0362 Capsella rubella HOM05D004899 ORTHO05D006580 8.9e-133 477.6 394 64.5
THA.LOC104820770 Tarenaya hassleriana HOM05D004899 ORTHO05D006580 1.2e-132 477.2 394 64.2
Ciclev10024089m.g Citrus clementina HOM05D004899 ORTHO05D006580 7.5e-132 474.6 370 75.4
Zm00001eb046420 Zea mays HOM05D004899 ORTHO05D006580 1.3e-131 473.8 396 69.2
EL10Ac4g08990 Beta vulgaris HOM05D004899 ORTHO05D006580 2.8e-131 472.6 397 67.0
A03p33610 Brassica napus HOM05D004899 ORTHO05D006580 6.3e-131 471.5 391 64.7
BolC3t16350H Brassica oleracea HOM05D004899 ORTHO05D006580 1.1e-130 470.7 391 65.0
Aa31LG5G14890 Aethionema arabicum HOM05D004899 ORTHO05D006580 3.1e-130 469.2 394 64.7
AUR62040914 Chenopodium quinoa HOM05D004899 ORTHO05D006580 4.1e-130 468.8 396 63.6
BcaC01g04376 Brassica carinata HOM05D004899 ORTHO05D006580 2.0e-129 466.5 391 64.2
C03p40810 Brassica napus HOM05D004899 ORTHO05D006580 2.0e-129 466.5 391 64.2
BraA03t12536Z Brassica rapa HOM05D004899 ORTHO05D006580 5.9e-129 464.9 396 63.9
DCAR_023087 Daucus carota HOM05D004899 ORTHO05D006580 8.0e-126 454.5 392 68.1
Nitab4.5_0003965g0030 Nicotiana tabacum HOM05D004899 ORTHO05D006580 5.8e-124 448.4 394 68.0
ATR0736G049 Amborella trichopoda HOM05D004899 ORTHO05D006580 1.3e-123 447.2 392 66.6
BcaB04g19333 Brassica carinata HOM05D004899 ORTHO05D006580 2.9e-123 446.0 378 63.5
CDE05G2618 Ceratophyllum demersum HOM05D004899 ORTHO05D006580 3.7e-123 445.7 394 65.7
vmacro10377 Vaccinium macrocarpon HOM05D004899 ORTHO05D006580 1.6e-121 440.3 426 63.6
Psat0s1997g0040 Pisum sativum HOM05D004899 ORTHO05D006580 2.1e-118 429.9 285 81.8
BcaC05g30197 Brassica carinata HOM05D004899 ORTHO05D006580 8.0e-118 427.9 400 58.5
BcaC05g29943 Brassica carinata HOM05D004899 ORTHO05D006580 8.9e-117 424.5 387 58.7
unitig_899.g15065 Utricularia gibba HOM05D004899 ORTHO05D006580 1.9e-114 416.8 390 66.2
AUR62004828 Chenopodium quinoa HOM05D004899 ORTHO05D006580 1.6e-113 413.7 360 65.6
Nitab4.5_0000914g0090 Nicotiana tabacum HOM05D004899 ORTHO05D006580 1.6e-113 413.7 394 66.0
C05p62800 Brassica napus HOM05D004899 ORTHO05D006580 2.2e-99 366.7 377 55.2
SMO367G0182 Selaginella moellendorffii HOM05D004899 ORTHO05D006580 9.2e-98 361.3 387 50.4
Ah.06g191810 Amaranthus hybridus HOM05D004899 ORTHO05D006580 1.1e-95 354.4 398 50.0
HPP92_008536 Vanilla planifolia HOM05D004899 ORTHO05D006580 8.1e-94 348.2 283 72.4
Pp3c17_6400 Physcomitrium patens HOM05D004899 ORTHO05D006580 1.2e-92 344.4 398 50.8
AagrBONN_evm.TU.Sc2ySwM_228.2413 Anthoceros agrestis HOM05D004899 ORTHO05D006580 1.5e-87 327.4 396 48.0
Cpa.g.sc306.4 Carica papaya HOM05D004899 ORTHO05D006580 7.1e-82 308.5 394 49.5
Mapoly0097s0077 Marchantia polymorpha HOM05D004899 ORTHO05D006580 2.1e-78 297.0 293 57.3
CARHR078590 Cardamine hirsuta HOM05D004899 ORTHO05D006580 3.4e-76 289.7 243 62.1
Haze_04413 Corylus avellana HOM05D004899 ORTHO05D006580 1.4e-74 284.3 328 60.1
RhsimUnG0045000 Rhododendron simsii HOM05D004899 ORTHO05D006580 1.4e-69 267.7 371 44.7
SHI31416 Sapria himalayana HOM05D004899 ORTHO05D006580 4.6e-65 252.7 384 51.3
MD12G1249500 Malus domestica HOM05D004899 ORTHO05D006580 8.7e-64 248.4 299 50.8
CANSAT80G2333 Cannabis sativa HOM05D004899 ORTHO05D006580 3.1e-53 213.4 182 60.4
CANSAT80G2786 Cannabis sativa HOM05D004899 ORTHO05D006580 6.9e-53 212.2 182 60.4
CBR_g51833 Chara braunii HOM05D004899 ORTHO05D006580 2.2e-51 207.2 539 31.4
TPR.G8890 Trifolium pratense HOM05D001167 ORTHO05D001054 2.7e-49 200.3 165 63.6
CARHR078600 Cardamine hirsuta HOM05D004899 ORTHO05D006580 5.1e-48 196.1 153 70.6
Cre06.g263602 Chlamydomonas reinhardtii HOM05D004899 ORTHO05D006580 2.0e-44 184.1 409 30.6
Oeu050631.1 Olea europaea HOM05D004899 ORTHO05D006580 2.6e-44 183.7 285 42.8
MCO09G554 Micromonas commoda HOM05D004899 ORTHO05D006580 2.6e-39 167.2 413 32.0
PRCOL_00005674 Prasinoderma coloniale HOM05D004899 ORTHO05D006580 5.7e-39 166.0 387 30.0
Hma1.2p1_1336F.1_g276500 Hydrangea macrophylla HOM05D004899 ORTHO05D006580 1.4e-37 161.4 122 72.1
BolC5t34933H Brassica oleracea HOM05D004899 ORTHO05D006580 1.3e-35 154.8 122 67.2
MD00G1148800 Malus domestica HOM05D004899 ORTHO05D006580 1.1e-34 151.8 206 47.1
BraA05t23048Z Brassica rapa HOM05D004899 ORTHO05D006580 2.6e-31 140.6 93 73.1
C07p09790 Brassica napus HOM05D004899 ORTHO05D006580 1.4e-29 134.8 162 46.3
Oeu040904.1 Olea europaea HOM05D004899 ORTHO05D006580 5.3e-29 132.9 71 78.9
Cc06_g01540 Coffea canephora HOM05D004899 ORTHO05D006580 1.9e-26 124.4 125 60.8
Cc05_g01300 Coffea canephora HOM05D004899 ORTHO05D006580 7.2e-26 122.5 88 72.7
MD08G1214200 Malus domestica HOM05D004899 ORTHO05D006580 8.8e-24 115.5 71 78.9
C01p22380 Brassica napus HOM05D004899 ORTHO05D006580 4.4e-23 113.2 112 51.8
SEGI_05516 Sequoiadendron giganteum HOM05D004899 ORTHO05D006580 4.4e-23 113.2 88 65.9
SEGI_08581 Sequoiadendron giganteum HOM05D004899 ORTHO05D006580 2.8e-22 110.5 148 45.3
BolC6t38557H Brassica oleracea HOM05D004899 ORTHO05D006580 4.1e-21 106.7 121 47.9
Cc06_g14670 Coffea canephora HOM05D004899 ORTHO05D006580 3.5e-20 103.6 190 47.9
Psat3g057720 Pisum sativum HOM05D004899 ORTHO05D006580 2.3e-19 100.9 50 86.0
BraA04t16133Z Brassica rapa HOM05D004899 ORTHO05D006580 2.5e-18 97.4 96 52.1
BcaC06g35909 Brassica carinata HOM05D004899 ORTHO05D006580 4.7e-17 93.2 147 39.5
FAN18G0756 Fragaria x ananassa HOM05D004899 ORTHO05D019122 1.3e-14 85.1 80 61.2
SEGI_06182 Sequoiadendron giganteum HOM05D004899 ORTHO05D006580 1.8e-13 81.3 48 62.5
Psat3g113200 Pisum sativum HOM05D004899 ORTHO05D034818 1.0e-11 75.5 40 87.5
SalBow6G6423 Salvia bowleyana HOM05D031023 ORTHO05D019122 1.1e-10 72.0 46 78.3
FvH4_3g30700 Fragaria vesca HOM05D004899 ORTHO05D019122 1.5e-10 71.6 51 72.5
FvH4_4g13630 Fragaria vesca HOM05D004899 ORTHO05D019122 6.1e-09 66.2 44 77.3
BcaC09g50711 Brassica carinata HOM05D004899 ORTHO05D006580 1.0e-08 65.5 96 41.7
Cc04_g06470 Coffea canephora HOM05D004899 ORTHO05D034818 4.0e-08 63.5 38 78.9
Haze_02280 Corylus avellana HOM05D000013 ORTHO05D000689 2.0e-07 61.2 35 82.9
FAN05G0601 Fragaria x ananassa HOM05D004899 ORTHO05D006580 8.3e-06 55.8 57 47.4


User provided reference genes

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