Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.006G101500 Phaseolus vulgaris HOM05D006821 ORTHO05D008740 3.1e-174 615.1 333 100.0
VMungo0540G1649 Vigna mungo HOM05D006821 ORTHO05D008740 8.7e-153 543.9 332 88.0
Glyma.03G246900 Glycine max HOM05D006821 ORTHO05D008740 8.1e-135 484.2 326 79.4
Glyma.19G244500 Glycine max HOM05D006821 ORTHO05D008740 4.0e-134 481.9 327 80.4
Lj1g0025723 Lotus japonicus HOM05D006821 ORTHO05D008740 3.5e-122 442.2 325 74.2
Ca_09420_v3 Cicer arietinum L. HOM05D006821 ORTHO05D008740 2.6e-117 426.0 330 72.7
arahy.Tifrunner.gnm1.ann1.7SV4PL Arachis hypogaea HOM05D006821 ORTHO05D008740 6.1e-114 414.8 329 69.6
Medtr7g115070 Medicago truncatula HOM05D006821 ORTHO05D008740 2.2e-111 406.4 334 67.7
Lalb_Chr04g0262251 Lupinus albus HOM05D006821 ORTHO05D008740 3.1e-110 402.5 325 64.6
Psat2g125040 Pisum sativum HOM05D006821 ORTHO05D008740 1.4e-105 387.1 332 67.5
TAR362G0286 Trochodendron aralioides HOM05D006821 ORTHO05D008740 2.2e-95 353.2 326 58.6
Actinidia18357 Actinidia chinensis HOM05D006821 ORTHO05D008740 2.8e-95 352.8 329 58.1
Duzib177G0830 Durio zibethinus HOM05D006821 ORTHO05D008740 2.8e-95 352.8 329 58.7
CSS0006427 Camellia sinensis var. sinensis HOM05D006821 ORTHO05D008740 2.4e-94 349.7 327 58.7
Prupe.6G342700 Prunus persica HOM05D006821 ORTHO05D008740 2.4e-94 349.7 326 60.1
Thecc.05G283900 Theobroma cacao HOM05D006821 ORTHO05D008740 4.1e-94 349.0 329 57.4
CiPaw.07G067000 Carya illinoinensis HOM05D006821 ORTHO05D008740 5.3e-94 348.6 326 57.7
TAR633G1083 Trochodendron aralioides HOM05D006821 ORTHO05D008740 1.2e-93 347.4 326 57.7
COL.COLO4_15343 Corchorus olitorius HOM05D006821 ORTHO05D008740 1.0e-92 344.4 329 57.4
Haze_04355 Corylus avellana HOM05D006821 ORTHO05D008740 1.0e-92 344.4 322 57.5
TPR.G6944 Trifolium pratense HOM05D006821 ORTHO05D008740 1.0e-92 344.4 264 70.8
Atru.chr2.810 Acer truncatum HOM05D006821 ORTHO05D008740 1.3e-92 344.0 332 56.6
MD12G1240800 Malus domestica HOM05D006821 ORTHO05D008740 6.5e-92 341.7 322 59.6
Duzib128G0425 Durio zibethinus HOM05D006821 ORTHO05D008740 1.5e-91 340.5 329 56.8
MD04G1224000 Malus domestica HOM05D006821 ORTHO05D008740 1.5e-91 340.5 322 58.1
RcHm_v2.0_Chr3g0451171 Rosa chinensis HOM05D006821 ORTHO05D008740 1.5e-91 340.5 328 57.9
FAN09G4578 Fragaria x ananassa HOM05D006821 ORTHO05D008740 1.9e-91 340.1 328 57.0
Hma1.2p1_0195F.1_g084560 Hydrangea macrophylla HOM05D006821 ORTHO05D008740 2.5e-91 339.7 329 57.1
Cfa006429 Carpinus fangiana HOM05D006821 ORTHO05D008740 4.2e-91 339.0 325 56.6
FAN14G2672 Fragaria x ananassa HOM05D006821 ORTHO05D008740 7.2e-91 338.2 328 56.4
FAN02G2705 Fragaria x ananassa HOM05D006821 ORTHO05D008740 9.4e-91 337.8 328 56.7
FAN05G4221 Fragaria x ananassa HOM05D006821 ORTHO05D008740 9.4e-91 337.8 328 56.7
Manes.08G134300 Manihot esculenta HOM05D006821 ORTHO05D008740 9.4e-91 337.8 326 56.4
FvH4_6g02990 Fragaria vesca HOM05D006821 ORTHO05D008740 1.2e-90 337.4 328 56.1
Sc20g0000300 Simmondsia chinensis HOM05D006821 ORTHO05D008740 1.2e-90 337.4 328 57.6
TWI56G0757 Tripterygium wilfordii HOM05D006821 ORTHO05D008740 1.6e-90 337.0 322 56.8
FAN05G1836 Fragaria x ananassa HOM05D006821 ORTHO05D008740 2.7e-90 336.3 328 56.7
Hund22116 Selenicereus undatus HOM05D006821 ORTHO05D008740 3.6e-90 335.9 324 56.5
Manes.09G153500 Manihot esculenta HOM05D006821 ORTHO05D008740 1.0e-89 334.3 326 55.5
GSVIVG01021794001 Vitis vinifera HOM05D006821 ORTHO05D008740 1.4e-89 334.0 322 57.8
AUR62004944 Chenopodium quinoa HOM05D006821 ORTHO05D008740 4.0e-89 332.4 327 56.0
Ciclev10001807m.g Citrus clementina HOM05D006821 ORTHO05D008740 4.0e-89 332.4 329 55.9
Dinv10030 Davidia involucrata HOM05D006821 ORTHO05D008740 4.0e-89 332.4 340 56.2
Gohir.D13G107900 Gossypium hirsutum HOM05D006821 ORTHO05D008740 2.6e-88 329.7 331 55.0
Cc02_g30600 Coffea canephora HOM05D006821 ORTHO05D008740 4.4e-88 328.9 328 54.0
Gorai.013G120900 Gossypium raimondii HOM05D006821 ORTHO05D008740 4.4e-88 328.9 331 54.7
Oeu038441.1 Olea europaea HOM05D006821 ORTHO05D008740 7.5e-88 328.2 327 52.9
AUR62001014 Chenopodium quinoa HOM05D006821 ORTHO05D008740 9.7e-88 327.8 327 55.0
QL03p025768 Quercus lobata HOM05D006821 ORTHO05D008740 1.3e-87 327.4 389 50.6
Gohir.A13G104500 Gossypium hirsutum HOM05D006821 ORTHO05D008740 2.2e-87 326.6 331 54.7
Aqoxy2G03492 Aquilegia oxysepala HOM05D006821 ORTHO05D008740 6.3e-87 325.1 326 56.4
Potri.013G040500 Populus trichocarpa HOM05D006821 ORTHO05D008740 1.8e-86 323.6 334 52.7
CANSAT54G2350 Cannabis sativa HOM05D006821 ORTHO05D008740 1.6e-85 320.5 325 53.5
MBI11_g26138_MAGBIO Magnolia biondii HOM05D006821 ORTHO05D008740 1.6e-85 320.5 327 55.0
Nitab4.5_0012228g0010 Nicotiana tabacum HOM05D006821 ORTHO05D008740 2.0e-85 320.1 327 53.8
Potri.005G052900 Populus trichocarpa HOM05D006821 ORTHO05D008740 1.3e-84 317.4 329 53.8
ClCG02G016590 Citrullus lanatus HOM05D006821 ORTHO05D008740 6.5e-84 315.1 327 52.0
PGSC0003DMG400019432 Solanum tuberosum HOM05D006821 ORTHO05D008740 4.2e-83 312.4 327 51.7
Solyc01g097350.4 Solanum lycopersicum HOM05D006821 ORTHO05D008740 2.3e-81 306.6 327 51.7
Sopen01g041020 Solanum pennellii HOM05D006821 ORTHO05D008740 5.2e-81 305.4 327 51.4
Peaxi162Scf00282g00328 Petunia axillaris HOM05D006821 ORTHO05D008740 1.2e-80 304.3 328 50.9
CAN.G134.100 Capsicum annuum HOM05D006821 ORTHO05D008740 7.5e-80 301.6 327 50.2
Sed0012709 Sechium edule HOM05D006821 ORTHO05D008740 1.7e-79 300.4 324 50.9
Nitab4.5_0001592g0080 Nicotiana tabacum HOM05D006821 ORTHO05D008740 3.7e-79 299.3 345 49.6
CsaV3_2G004180 Cucumis sativus L. HOM05D006821 ORTHO05D008740 5.4e-78 295.4 329 49.8
THA.LOC104821676 Tarenaya hassleriana HOM05D006821 ORTHO05D008740 5.4e-78 295.4 324 50.0
Lj7A490T61 Lonicera japonica HOM05D006821 ORTHO05D008740 1.2e-77 294.3 385 45.2
DCAR_029732 Daucus carota HOM05D006821 ORTHO05D008740 1.6e-77 293.9 326 49.1
Migut.N01911 Erythranthe guttata HOM05D006821 ORTHO05D008740 2.0e-77 293.5 334 50.0
PGR004G1103 Punica granatum HOM05D006821 ORTHO05D008740 2.0e-77 293.5 321 49.8
EL10Ac4g09134 Beta vulgaris HOM05D006821 ORTHO05D008740 4.5e-77 292.4 403 43.7
Thhalv10004570m.g Eutrema salsugineum HOM05D006821 ORTHO05D008740 1.3e-76 290.8 324 48.5
Sabra05G0046500 Salix brachista HOM05D006821 ORTHO05D008740 2.9e-76 289.7 382 47.1
PSO210G3560 Papaver somniferum HOM05D006821 ORTHO05D008740 4.2e-75 285.8 327 48.6
PSO210G3856 Papaver somniferum HOM05D006821 ORTHO05D008740 4.2e-75 285.8 327 48.6
PSO461G0046 Papaver somniferum HOM05D006821 ORTHO05D008740 1.6e-74 283.9 323 47.7
BraA09t36137Z Brassica rapa HOM05D006821 ORTHO05D008740 4.7e-74 282.3 324 46.6
SalBow4G1195 Salvia bowleyana HOM05D006821 ORTHO05D008740 8.0e-74 281.6 329 50.8
SalBow4G2420 Salvia bowleyana HOM05D006821 ORTHO05D008740 8.0e-74 281.6 329 50.8
ATR0606G003 Amborella trichopoda HOM05D006821 ORTHO05D008740 1.8e-73 280.4 331 51.1
Eucgr.H04340 Eucalyptus grandis HOM05D006821 ORTHO05D008740 3.0e-73 279.6 327 48.3
A09p04980 Brassica napus HOM05D006821 ORTHO05D008740 4.0e-73 279.3 324 46.3
Sp2g20040 Schrenkiella parvula HOM05D006821 ORTHO05D008740 2.6e-72 276.6 324 46.3
Cpa.g.sc117.86 Carica papaya HOM05D006821 ORTHO05D008740 2.8e-71 273.1 298 48.7
Aa31LG11G8550 Aethionema arabicum HOM05D006821 ORTHO05D008740 4.9e-71 272.3 323 45.8
BcaB04g19632 Brassica carinata HOM05D006821 ORTHO05D008740 6.3e-71 271.9 324 43.8
Dinv04728 Davidia involucrata HOM05D006821 ORTHO05D008740 6.3e-71 271.9 213 65.3
BolC9t53466H Brassica oleracea HOM05D006821 ORTHO05D008740 1.8e-70 270.4 324 45.4
BcaC04g23721 Brassica carinata HOM05D006821 ORTHO05D008740 5.4e-70 268.9 324 45.1
C09p05380 Brassica napus HOM05D006821 ORTHO05D008740 5.4e-70 268.9 324 45.1
Carub.0006s2610 Capsella rubella HOM05D006821 ORTHO05D008740 5.4e-70 268.9 325 45.2
AL6G40810 Arabidopsis lyrata HOM05D006821 ORTHO05D008740 7.8e-69 265.0 323 45.5
CARHR185340 Cardamine hirsuta HOM05D006821 ORTHO05D008740 1.0e-68 264.6 325 45.5
CDE07G0065 Ceratophyllum demersum HOM05D006821 ORTHO05D008740 1.0e-68 264.6 323 46.4
CDE04G3363 Ceratophyllum demersum HOM05D006821 ORTHO05D008740 2.3e-68 263.5 323 46.4
AT5G28830 Arabidopsis thaliana HOM05D006821 ORTHO05D008740 6.6e-68 261.9 320 45.9
HPP92_024348 Vanilla planifolia HOM05D006821 ORTHO05D008740 2.8e-66 256.5 327 46.8
MELO3C004376.2 Cucumis melo HOM05D006821 ORTHO05D008740 3.1e-65 253.1 328 46.0
SEGI_00561 Sequoiadendron giganteum HOM05D006821 ORTHO05D008740 1.2e-64 251.1 336 44.3
Nn1g02511 Nelumbo nucifera HOM05D006821 ORTHO05D008740 4.4e-56 222.6 213 54.9
PSO210G3711 Papaver somniferum HOM05D006821 ORTHO05D008740 3.2e-54 216.5 227 52.4
Pp3c20_9750 Physcomitrium patens HOM05D006821 ORTHO05D008740 8.3e-47 191.8 335 37.9
Mapoly0083s0056 Marchantia polymorpha HOM05D006821 ORTHO05D008740 6.0e-45 185.7 336 35.4
AagrBONN_evm.TU.Sc2ySwM_228.4858 Anthoceros agrestis HOM05D006821 ORTHO05D007268 1.1e-35 154.8 351 35.9
Ah.07g201960 Amaranthus hybridus HOM05D006821 ORTHO05D008740 7.3e-35 152.1 323 31.9
CBR_g10979 Chara braunii HOM05D006821 ORTHO05D008740 9.0e-33 145.2 254 37.8
SMO259G0008 Selaginella moellendorffii HOM05D006821 ORTHO05D008740 1.7e-31 141.0 228 36.8
AagrBONN_evm.TU.Sc2ySwM_228.4145 Anthoceros agrestis HOM05D006821 ORTHO05D008740 6.2e-18 95.9 142 42.3
Glyma.11G097500 Glycine max HOM05D004759 ORTHO05D005722 7.9e-13 79.0 258 27.1
Cfa005166 Carpinus fangiana HOM05D004759 ORTHO05D005722 3.9e-12 76.6 259 27.4
Gorai.008G032900 Gossypium raimondii HOM05D004759 ORTHO05D005722 1.1e-11 75.1 254 26.0
SMO169G0202 Selaginella moellendorffii HOM05D004759 ORTHO05D005722 1.5e-11 74.7 270 23.3
GSVIVG01024116001 Vitis vinifera HOM05D004759 ORTHO05D005722 1.9e-11 74.3 258 26.7
EL10Ac9g21461 Beta vulgaris HOM05D004759 ORTHO05D005722 3.3e-11 73.6 260 25.8
Gohir.A03G202700 Gossypium hirsutum HOM05D004759 ORTHO05D005722 3.3e-11 73.6 248 25.0
TPR.G24580 Trifolium pratense HOM05D006821 ORTHO05D008740 3.3e-11 73.6 102 52.9
CiPaw.06G125800 Carya illinoinensis HOM05D004759 ORTHO05D005722 5.7e-11 72.8 291 26.5
Ca_18993_v3 Cicer arietinum L. HOM05D004759 ORTHO05D005722 7.4e-11 72.4 275 25.1
Sc18g0006740 Simmondsia chinensis HOM05D004759 ORTHO05D005722 1.3e-10 71.6 266 27.8
Gohir.A12G040100 Gossypium hirsutum HOM05D004759 ORTHO05D005722 2.1e-10 70.9 245 25.7
Medtr4g075610 Medicago truncatula HOM05D004759 ORTHO05D005722 2.1e-10 70.9 248 25.4
AUR62010113 Chenopodium quinoa HOM05D004759 ORTHO05D005722 2.8e-10 70.5 264 25.8
Gorai.005G251800 Gossypium raimondii HOM05D004759 ORTHO05D005722 4.8e-10 69.7 246 24.4
TPR.G17153 Trifolium pratense HOM05D004759 ORTHO05D005722 4.8e-10 69.7 258 25.2
Gohir.D02G224000 Gossypium hirsutum HOM05D004759 ORTHO05D005722 6.2e-10 69.3 248 25.0
Gohir.D12G032200 Gossypium hirsutum HOM05D004759 ORTHO05D005722 6.2e-10 69.3 245 25.3
MBI05_g15352_MAGBIO Magnolia biondii HOM05D004759 ORTHO05D005722 6.2e-10 69.3 264 25.4
Os03g0250000 Oryza sativa ssp. japonica HOM05D004759 ORTHO05D005722 8.2e-10 68.9 250 26.4
CARHR032970 Cardamine hirsuta HOM05D006821 ORTHO05D008740 1.1e-09 68.6 80 37.5
CiPaw.05G076100 Carya illinoinensis HOM05D004759 ORTHO05D005722 1.8e-09 67.8 258 26.7
Hund06394 Selenicereus undatus HOM05D004759 ORTHO05D005722 1.8e-09 67.8 263 26.2
Haze_02210 Corylus avellana HOM05D004759 ORTHO05D005722 6.9e-09 65.9 256 23.8
Lj5A186G40 Lonicera japonica HOM05D004759 ORTHO05D005722 9.0e-09 65.5 220 24.5
Actinidia00585 Actinidia chinensis HOM05D004759 ORTHO05D005722 1.2e-08 65.1 213 27.7
ECA233G0594 Erigeron canadensis HOM05D004759 ORTHO05D005722 2.0e-08 64.3 256 25.0
AL7G10680 Arabidopsis lyrata HOM05D004759 ORTHO05D005722 3.4e-08 63.5 224 22.3
AT4G38810 Arabidopsis thaliana HOM05D004759 ORTHO05D005722 4.5e-08 63.2 225 22.2
PSO170G3415 Papaver somniferum HOM05D004759 ORTHO05D005722 7.6e-08 62.4 226 20.8
PGSC0003DMG400001638 Solanum tuberosum HOM05D004759 ORTHO05D005722 7.6e-08 62.4 226 23.5
AUR62013108 Chenopodium quinoa HOM05D004759 ORTHO05D005722 1.0e-07 62.0 226 22.1
Thhalv10025463m.g Eutrema salsugineum HOM05D004759 ORTHO05D005722 1.7e-07 61.2 225 20.4
Sp7g37010 Schrenkiella parvula HOM05D004759 ORTHO05D005722 1.7e-07 61.2 234 20.5
Ah.01g009490 Amaranthus hybridus HOM05D004759 ORTHO05D005722 2.2e-07 60.8 226 22.1
Nitab4.5_0000283g0200 Nicotiana tabacum HOM05D004759 ORTHO05D005722 2.2e-07 60.8 226 23.0
CAN.G588.16 Capsicum annuum HOM05D004759 ORTHO05D005722 2.9e-07 60.5 237 22.8
PSO700G0005 Papaver somniferum HOM05D004759 ORTHO05D005722 2.9e-07 60.5 226 20.4
PGR042G1303 Punica granatum HOM05D004759 ORTHO05D005722 2.9e-07 60.5 231 22.5
Solyc01g111040.4 Solanum lycopersicum HOM05D004759 ORTHO05D005722 2.9e-07 60.5 226 23.0
CARHR247920 Cardamine hirsuta HOM05D004759 ORTHO05D005722 3.8e-07 60.1 224 21.0
Aa31LG6G16400 Aethionema arabicum HOM05D004759 ORTHO05D005722 5.0e-07 59.7 226 21.7
C07p63570 Brassica napus HOM05D004759 ORTHO05D005722 5.0e-07 59.7 223 20.6
BolC7t46770H Brassica oleracea HOM05D004759 ORTHO05D005722 5.0e-07 59.7 223 20.6
Nitab4.5_0000980g0350 Nicotiana tabacum HOM05D004759 ORTHO05D005722 5.0e-07 59.7 226 22.6
A06p48900 Brassica napus HOM05D004759 ORTHO05D005722 6.5e-07 59.3 224 19.6
BraA06t27758Z Brassica rapa HOM05D004759 ORTHO05D005722 6.5e-07 59.3 224 19.6
Ciclev10028685m.g Citrus clementina HOM05D004759 ORTHO05D005722 6.5e-07 59.3 169 24.3
Sopen01g053100 Solanum pennellii HOM05D004759 ORTHO05D005722 6.5e-07 59.3 226 22.6
Zm00001eb010730 Zea mays HOM05D004759 ORTHO05D005722 8.4e-07 58.9 258 25.2
Zm00001eb224230 Zea mays HOM05D004759 ORTHO05D005722 8.4e-07 58.9 128 24.2
THA.LOC104824783 Tarenaya hassleriana HOM05D004759 ORTHO05D005722 1.1e-06 58.5 226 21.7
HPP92_003524 Vanilla planifolia HOM05D004759 ORTHO05D005722 1.1e-06 58.5 130 23.8
HPP92_003533 Vanilla planifolia HOM05D004759 ORTHO05D005722 1.1e-06 58.5 223 22.0
Psat7g178120 Pisum sativum HOM05D004759 ORTHO05D005722 1.4e-06 58.2 258 24.8
CANSAT25G1906 Cannabis sativa HOM05D004759 ORTHO05D005722 1.9e-06 57.8 172 23.8
Thecc.02G068600 Theobroma cacao HOM05D004759 ORTHO05D005722 1.9e-06 57.8 223 20.6
TAR365G0108 Trochodendron aralioides HOM05D006821 ORTHO05D008740 1.9e-06 57.8 136 32.4
ATR0481G015 Amborella trichopoda HOM05D004759 ORTHO05D005722 3.2e-06 57.0 130 26.9
COL.COLO4_17240 Corchorus olitorius HOM05D004759 ORTHO05D005722 3.2e-06 57.0 172 22.1
QL11p047309 Quercus lobata HOM05D004759 ORTHO05D005722 3.2e-06 57.0 169 23.7
Ciclev10030375m.g Citrus clementina HOM05D004759 ORTHO05D005722 4.2e-06 56.6 169 25.4
Dinv41981 Davidia involucrata HOM05D004759 ORTHO05D005722 4.2e-06 56.6 172 24.4
Mapoly0103s0051 Marchantia polymorpha HOM05D004759 ORTHO05D005722 4.2e-06 56.6 135 25.2
Peaxi162Scf00362g01041 Petunia axillaris HOM05D004759 ORTHO05D005722 4.2e-06 56.6 226 21.7
Sabra09G0098000 Salix brachista HOM05D004759 ORTHO05D005722 4.2e-06 56.6 226 22.6
TAR628G0309 Trochodendron aralioides HOM05D004759 ORTHO05D005722 4.2e-06 56.6 248 25.0
SGA_v2.0_scaffold32G13244 Striga asiatica HOM05D004759 ORTHO05D005722 5.5e-06 56.2 182 24.2


User provided reference genes

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