Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.006G094600 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 5.8e-308 1060.1 537 100.0
Glyma.19G237800 Glycine max HOM05D003767 ORTHO05D004507 4.1e-253 877.9 537 84.0
Glyma.19G237900 Glycine max HOM05D003767 ORTHO05D004507 7.2e-242 840.5 473 88.4
Phvul.006G094700 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 6.8e-232 807.4 487 83.4
Medtr7g113890 Medicago truncatula HOM05D003767 ORTHO05D004507 1.4e-229 799.7 502 79.1
TPR.G33164 Trifolium pratense HOM05D003767 ORTHO05D004507 7.0e-229 797.3 469 82.7
Lj1g0009738 Lotus japonicus HOM05D003767 ORTHO05D004507 1.4e-221 773.1 466 81.5
arahy.Tifrunner.gnm1.ann1.1T3PYK Arachis hypogaea HOM05D003767 ORTHO05D004507 1.2e-220 770.0 504 76.0
arahy.Tifrunner.gnm1.ann1.RYM43V Arachis hypogaea HOM05D003767 ORTHO05D004507 3.9e-219 765.0 562 70.3
Ca_09376_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 2.8e-217 758.8 465 80.6
Lj1g0000488 Lotus japonicus HOM05D003767 ORTHO05D004507 5.2e-216 754.6 539 69.9
VMungo0540G2084 Vigna mungo HOM05D003767 ORTHO05D004507 4.9e-214 748.0 474 79.7
CANSAT54G0870 Cannabis sativa HOM05D003767 ORTHO05D004507 2.7e-212 742.3 497 72.8
Glyma.19G237700 Glycine max HOM05D003767 ORTHO05D004507 2.8e-209 732.3 532 69.4
Lalb_Chr18g0045501 Lupinus albus HOM05D003767 ORTHO05D004507 2.8e-209 732.3 591 64.0
Ca_09375_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 3.6e-209 731.9 480 74.0
TPR.G33204 Trifolium pratense HOM05D003767 ORTHO05D004507 4.7e-209 731.5 549 67.6
Prupe.6G331000 Prunus persica HOM05D003767 ORTHO05D004507 6.8e-208 727.6 474 73.8
TAR365G0614 Trochodendron aralioides HOM05D003767 ORTHO05D004507 6.8e-208 727.6 531 69.3
Gohir.A11G224810 Gossypium hirsutum HOM05D003767 ORTHO05D004507 2.0e-207 726.1 474 74.5
Glyma.03G240600 Glycine max HOM05D003767 ORTHO05D004507 2.6e-207 725.7 525 69.7
CiPaw.08G167300 Carya illinoinensis HOM05D003767 ORTHO05D004507 3.4e-207 725.3 474 74.3
Cfa006539 Carpinus fangiana HOM05D003767 ORTHO05D004507 4.4e-207 724.9 474 75.5
Duzib147G0043 Durio zibethinus HOM05D003767 ORTHO05D004507 5.8e-207 724.5 473 73.8
Psat3g009920 Pisum sativum HOM05D003767 ORTHO05D004507 2.2e-206 722.6 520 68.8
Phvul.006G094500 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 2.9e-206 722.2 539 67.7
Thecc.02G212900 Theobroma cacao HOM05D003767 ORTHO05D004507 3.7e-206 721.8 527 67.2
Gohir.D11G232600 Gossypium hirsutum HOM05D003767 ORTHO05D004507 6.4e-206 721.1 474 73.8
Potri.005G038100 Populus trichocarpa HOM05D003767 ORTHO05D004507 8.3e-206 720.7 474 72.8
Ciclev10000728m.g Citrus clementina HOM05D003767 ORTHO05D004507 1.4e-205 719.9 471 73.9
Gorai.003G066300 Gossypium raimondii HOM05D003767 ORTHO05D004507 1.9e-205 719.5 478 73.6
Sc09g0003380 Simmondsia chinensis HOM05D003767 ORTHO05D004507 2.4e-205 719.2 474 72.8
Potri.013G026800 Populus trichocarpa HOM05D003767 ORTHO05D004507 4.1e-205 718.4 474 72.4
MELO3C015345.2 Cucumis melo HOM05D003767 ORTHO05D004507 9.2e-205 717.2 476 73.3
Manes.09G162900 Manihot esculenta HOM05D003767 ORTHO05D004507 1.6e-204 716.5 531 67.0
Manes.08G123500 Manihot esculenta HOM05D003767 ORTHO05D004507 4.6e-204 714.9 474 72.4
PGR031G1040 Punica granatum HOM05D003767 ORTHO05D004507 6.0e-204 714.5 476 73.3
TWI56G0745 Tripterygium wilfordii HOM05D003767 ORTHO05D004507 6.0e-204 714.5 508 69.5
FvH4_6g05260 Fragaria vesca HOM05D003767 ORTHO05D004507 2.3e-203 712.6 467 74.1
GSVIVG01022056001 Vitis vinifera HOM05D003767 ORTHO05D004507 3.0e-203 712.2 478 72.8
Medtr7g113880 Medicago truncatula HOM05D003767 ORTHO05D004507 5.1e-203 711.4 547 66.0
Actinidia23606 Actinidia chinensis HOM05D003767 ORTHO05D004507 8.6e-203 710.7 474 73.0
A09p05240 Brassica napus HOM05D003767 ORTHO05D004507 1.1e-202 710.3 474 71.1
Hma1.2p1_0666F.1_g199390 Hydrangea macrophylla HOM05D003767 ORTHO05D004507 1.1e-202 710.3 474 72.4
vmacro05036 Vaccinium macrocarpon HOM05D003767 ORTHO05D004507 1.1e-202 710.3 537 66.7
DCAR_029443 Daucus carota HOM05D003767 ORTHO05D004507 1.5e-202 709.9 471 72.2
Sed0026847 Sechium edule HOM05D003767 ORTHO05D004507 2.5e-202 709.1 504 69.2
DCAR_005538 Daucus carota HOM05D003767 ORTHO05D004507 4.3e-202 708.4 471 71.8
Sp2g20600 Schrenkiella parvula HOM05D003767 ORTHO05D004507 1.2e-201 706.8 539 65.5
Eucgr.H04452 Eucalyptus grandis HOM05D003767 ORTHO05D004507 6.2e-201 704.5 474 72.8
PSO832G1867 Papaver somniferum HOM05D003767 ORTHO05D004507 8.1e-201 704.1 474 72.8
Thhalv10003956m.g Eutrema salsugineum HOM05D003767 ORTHO05D004507 1.1e-200 703.7 542 65.1
BolC7t44598H Brassica oleracea HOM05D003767 ORTHO05D004507 1.5e-199 699.9 478 70.5
CARHR185970 Cardamine hirsuta HOM05D003767 ORTHO05D004507 1.5e-199 699.9 473 70.4
BcaNung02467 Brassica carinata HOM05D003767 ORTHO05D004507 5.8e-199 698.0 474 70.5
C07p40700 Brassica napus HOM05D003767 ORTHO05D004507 5.8e-199 698.0 474 70.5
ECA238G2357 Erigeron canadensis HOM05D003767 ORTHO05D004507 5.8e-199 698.0 483 70.6
C09p05700 Brassica napus HOM05D003767 ORTHO05D004507 1.7e-198 696.4 474 69.8
Solyc01g098610.4 Solanum lycopersicum HOM05D003767 ORTHO05D004507 4.9e-198 694.9 498 69.3
PSO210G1178 Papaver somniferum HOM05D003767 ORTHO05D004507 6.4e-198 694.5 474 71.9
Aqoxy5G00559 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 8.4e-198 694.1 475 71.2
THA.LOC104821704 Tarenaya hassleriana HOM05D003767 ORTHO05D004507 3.2e-197 692.2 514 66.9
BraA09t36163Z Brassica rapa HOM05D003767 ORTHO05D004507 4.1e-197 691.8 477 69.4
A06p37610 Brassica napus HOM05D003767 ORTHO05D004507 7.1e-197 691.0 474 69.8
BraA06t26680Z Brassica rapa HOM05D003767 ORTHO05D004507 7.1e-197 691.0 474 69.8
PGSC0003DMG400028599 Solanum tuberosum HOM05D003767 ORTHO05D004507 1.6e-196 689.9 474 71.3
Migut.F01584 Erythranthe guttata HOM05D003767 ORTHO05D004507 4.6e-196 688.3 506 67.0
Psat3g009360 Pisum sativum HOM05D003767 ORTHO05D004507 4.6e-196 688.3 548 65.5
Aa31LG11G9150 Aethionema arabicum HOM05D003767 ORTHO05D004507 7.8e-196 687.6 474 69.6
BcaNung04364 Brassica carinata HOM05D003767 ORTHO05D004507 7.8e-196 687.6 474 69.4
Oeu027914.1 Olea europaea HOM05D003767 ORTHO05D004507 1.7e-195 686.4 529 65.2
Sopen01g042160 Solanum pennellii HOM05D003767 ORTHO05D004507 1.7e-195 686.4 489 69.9
RcHm_v2.0_Chr3g0453991 Rosa chinensis HOM05D003767 ORTHO05D004507 5.1e-195 684.9 499 68.5
MD04G1210100 Malus domestica HOM05D003767 ORTHO05D004507 6.6e-195 684.5 474 70.9
AL6G39640 Arabidopsis lyrata HOM05D003767 ORTHO05D004507 3.3e-194 682.2 512 65.4
Carub.0006s2517 Capsella rubella HOM05D003767 ORTHO05D004507 3.3e-194 682.2 529 63.9
AT5G27380 Arabidopsis thaliana HOM05D003767 ORTHO05D004507 7.3e-194 681.0 549 62.1
Nitab4.5_0004940g0030 Nicotiana tabacum HOM05D003767 ORTHO05D004507 9.6e-194 680.6 484 69.4
VMungo0540G0577 Vigna mungo HOM05D003767 ORTHO05D004507 2.8e-193 679.1 521 66.2
MSTRG.8108 Avicennia marina HOM05D003767 ORTHO05D004507 4.7e-193 678.3 474 69.4
QL03p004251 Quercus lobata HOM05D003767 ORTHO05D004507 1.4e-192 676.8 492 69.1
FAN14G0860 Fragaria x ananassa HOM05D003767 ORTHO05D004507 2.4e-192 676.0 467 71.7
FAN14G3644 Fragaria x ananassa HOM05D003767 ORTHO05D004507 2.4e-192 676.0 467 71.7
RhsimUnG0080300 Rhododendron simsii HOM05D003767 ORTHO05D004507 2.4e-192 676.0 487 68.2
AUR62000859 Chenopodium quinoa HOM05D003767 ORTHO05D004507 5.8e-191 671.4 495 65.9
FAN05G2944 Fragaria x ananassa HOM05D003767 ORTHO05D004507 1.7e-190 669.8 467 71.3
BcaB04g19665 Brassica carinata HOM05D003767 ORTHO05D004507 2.9e-190 669.1 501 65.7
Cc02_g32590 Coffea canephora HOM05D003767 ORTHO05D004507 3.8e-190 668.7 480 69.4
BcaC04g23683 Brassica carinata HOM05D003767 ORTHO05D004507 7.1e-189 664.5 474 67.3
MD12G1224500 Malus domestica HOM05D003767 ORTHO05D004507 2.1e-188 662.9 532 63.9
BolC9t53499H Brassica oleracea HOM05D003767 ORTHO05D004507 3.5e-188 662.1 474 67.1
COL.COLO4_12128 Corchorus olitorius HOM05D003767 ORTHO05D004507 3.5e-188 662.1 475 69.5
ECA238G1346 Erigeron canadensis HOM05D003767 ORTHO05D004507 6.0e-188 661.4 469 69.1
SGA_v2.0_scaffold13G06464 Striga asiatica HOM05D003767 ORTHO05D004507 6.0e-188 661.4 487 67.6
Os11g0642800 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 1.5e-186 656.8 458 69.0
DCAR_002932 Daucus carota HOM05D003767 ORTHO05D004507 7.3e-186 654.4 471 68.6
Lj9A681G36 Lonicera japonica HOM05D003767 ORTHO05D004507 1.6e-185 653.3 459 69.5
Rhsim07G0179200 Rhododendron simsii HOM05D003767 ORTHO05D004507 1.6e-185 653.3 487 66.7
SalBow6G1775 Salvia bowleyana HOM05D003767 ORTHO05D003551 1.4e-184 650.2 476 67.6
Os12g0528400 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 1.8e-184 649.8 455 67.9
Aqoxy2G03198 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 4.0e-184 648.7 479 67.6
EL10Ac4g09299 Beta vulgaris HOM05D003767 ORTHO05D004507 1.2e-183 647.1 533 60.4
AUR62005115 Chenopodium quinoa HOM05D003767 ORTHO05D004507 1.2e-183 647.1 619 55.4
CAN.G1134.12 Capsicum annuum HOM05D003767 ORTHO05D004507 2.2e-182 642.9 473 67.4
unitig_26.g9470 Utricularia gibba HOM05D003767 ORTHO05D004507 2.9e-182 642.5 514 62.5
Lsat_1_v5_gn_2_64341 Lactuca sativa HOM05D003767 ORTHO05D004507 6.4e-182 641.3 520 64.0
Hund07038 Selenicereus undatus HOM05D003767 ORTHO05D004507 1.4e-181 640.2 522 62.3
CSS0020414 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 1.2e-180 637.1 467 67.2
FAN09G3025 Fragaria x ananassa HOM05D003767 ORTHO05D004507 1.6e-180 636.7 467 68.1
ClCG03G016760 Citrullus lanatus HOM05D003767 ORTHO05D004507 2.1e-180 636.3 616 55.5
CSS0005723 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 2.0e-175 619.8 467 66.2
VMungo0540G2112 Vigna mungo HOM05D003767 ORTHO05D004507 1.3e-169 600.5 344 90.1
Os12g0263000 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 9.0e-168 594.3 464 61.4
MBI17_g18114_MAGBIO Magnolia biondii HOM05D003767 ORTHO05D004507 3.2e-165 585.9 565 56.8
Cpa.g.sc48.5 Carica papaya HOM05D003767 ORTHO05D004507 9.3e-165 584.3 473 63.6
CSS0007130 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 4.3e-162 575.5 366 76.0
Atru.chr2.496 Acer truncatum HOM05D003767 ORTHO05D004507 6.3e-161 571.6 363 74.9
Peaxi162Scf00434g00336 Petunia axillaris HOM05D003767 ORTHO05D004507 2.0e-159 566.6 471 62.8
Mapoly0002s0041 Marchantia polymorpha HOM05D003767 ORTHO05D004507 1.6e-153 547.0 459 58.2
Zm00001eb137820 Zea mays HOM05D003767 ORTHO05D004507 1.1e-152 544.3 391 66.5
Pp3c1_36280 Physcomitrium patens HOM05D003767 ORTHO05D004507 3.0e-147 526.2 470 54.9
Ah.06g190170 Amaranthus hybridus HOM05D003767 ORTHO05D004507 5.1e-147 525.4 531 52.4
Zm00001eb115490 Zea mays HOM05D003767 ORTHO05D004507 2.6e-143 513.1 362 68.2
Actinidia05727 Actinidia chinensis HOM05D003767 ORTHO05D004507 1.1e-141 507.7 475 57.9
SMO271G0026 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 3.6e-140 502.7 469 54.2
Nitab4.5_0001423g0150 Nicotiana tabacum HOM05D003767 ORTHO05D004507 4.8e-137 492.3 361 68.7
FAN05G1904 Fragaria x ananassa HOM05D003767 ORTHO05D004507 5.3e-136 488.8 474 55.1
HPP92_001826 Vanilla planifolia HOM05D003767 ORTHO05D004507 1.6e-135 487.3 381 65.6
Sabra05G0038000 Salix brachista HOM05D003767 ORTHO05D004507 5.7e-130 468.8 325 69.2
CsaV3_1G039210 Cucumis sativus L. HOM05D003767 ORTHO05D004507 4.1e-128 462.6 375 63.7
Nn1g08367 Nelumbo nucifera HOM05D003767 ORTHO05D004507 1.3e-126 457.6 288 76.0
Cre17.g708800 Chlamydomonas reinhardtii HOM05D003767 ORTHO05D004507 9.8e-114 414.8 506 46.0
PRCOL_00004575 Prasinoderma coloniale HOM05D003767 ORTHO05D004507 1.3e-110 404.4 478 46.2
Haze_04251 Corylus avellana HOM05D003767 ORTHO05D004507 1.4e-107 394.4 281 70.5
HanXRQChr10g0295061 Helianthus annuus HOM05D003767 ORTHO05D004507 1.1e-101 374.8 243 72.8
Lalb_Chr15g0077051 Lupinus albus HOM05D003767 ORTHO05D004507 2.8e-100 370.2 219 81.3
HanXRQChr14g0446461 Helianthus annuus HOM05D003767 ORTHO05D004507 5.6e-93 345.9 217 74.7
MCO07G639 Micromonas commoda HOM05D003767 ORTHO05D004507 4.7e-92 342.8 457 42.0
SGA_v2.0_scaffold499G52492 Striga asiatica HOM05D003767 ORTHO05D004507 2.4e-88 330.5 270 62.6
ATR0626G007 Amborella trichopoda HOM05D003767 ORTHO05D004507 9.2e-88 328.6 212 72.2
FAN02G0487 Fragaria x ananassa HOM05D003767 ORTHO05D004507 1.0e-86 325.1 225 70.7
HanXRQChr14g0446471 Helianthus annuus HOM05D003767 ORTHO05D004507 4.7e-84 316.2 269 60.2
HanXRQChr10g0295071 Helianthus annuus HOM05D003767 ORTHO05D004507 8.1e-84 315.5 239 66.1
ATR0626G021 Amborella trichopoda HOM05D003767 ORTHO05D004507 1.3e-81 308.1 275 56.0
Lalb_Chr15g0077061 Lupinus albus HOM05D003767 ORTHO05D004507 1.7e-81 307.8 203 72.9
CBR_g15993 Chara braunii HOM05D003767 ORTHO05D004507 1.2e-79 301.6 470 38.1
AagrBONN_evm.TU.Sc2ySwM_117.2518 Anthoceros agrestis HOM05D003767 ORTHO05D004507 1.5e-77 294.7 271 53.5
COL.COLO4_24985 Corchorus olitorius HOM05D003767 ORTHO05D004507 1.3e-70 271.6 187 72.7
Cfa024552 Carpinus fangiana HOM05D003767 ORTHO05D004507 1.4e-64 251.5 483 35.2
Actinidia24503 Actinidia chinensis HOM05D003767 ORTHO05D004507 4.6e-63 246.5 288 49.3
Sabra05G0037900 Salix brachista HOM05D003767 ORTHO05D004507 3.0e-62 243.8 162 74.7
COL.COLO4_10335 Corchorus olitorius HOM05D003767 ORTHO05D004507 3.0e-54 217.2 183 62.8
Nn1g08361 Nelumbo nucifera HOM05D003767 ORTHO05D004507 1.5e-50 204.9 139 74.8
SEGI_25900 Sequoiadendron giganteum HOM05D003767 ORTHO05D004507 1.5e-50 204.9 159 62.9
SMO304G0030 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 7.1e-48 196.1 283 42.4
Eucgr.H04446 Eucalyptus grandis HOM05D003767 ORTHO05D004507 3.8e-41 173.7 114 72.8
SEGI_31082 Sequoiadendron giganteum HOM05D003767 ORTHO05D004507 5.0e-41 173.3 137 58.4
CDE02G2107 Ceratophyllum demersum HOM05D000488 ORTHO05D000347 7.2e-40 169.5 121 65.3
Nn1g02104 Nelumbo nucifera HOM05D003767 ORTHO05D004507 2.7e-39 167.5 126 60.3
BolC5t32099H Brassica oleracea HOM05D003767 ORTHO05D041347 3.4e-34 150.6 322 36.0
BcaC05g27416 Brassica carinata HOM05D003767 ORTHO05D004507 2.2e-33 147.9 153 51.6
VMungo0540G1019 Vigna mungo HOM05D003767 ORTHO05D004507 3.2e-32 144.1 94 74.5
C05p33690 Brassica napus HOM05D003767 ORTHO05D041347 5.5e-32 143.3 321 34.0
CSS0000499 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 2.7e-31 141.0 80 81.2
CAN.G299.1 Capsicum annuum HOM05D003767 ORTHO05D004507 6.1e-31 139.8 88 72.7
Glyma.03G240651 Glycine max HOM05D003767 ORTHO05D004507 2.3e-30 137.9 109 67.0
TAR636G1925 Trochodendron aralioides HOM05D003767 ORTHO05D004507 5.7e-29 133.3 76 84.2
A10p14120 Brassica napus HOM05D000085 ORTHO05D001756 3.1e-27 127.5 106 53.8
SGA_v2.0_scaffold71G23819 Striga asiatica HOM05D001920 ORTHO05D004895 1.5e-26 125.2 82 68.3
Psat1g075760 Pisum sativum HOM05D003767 ORTHO05D004507 4.5e-26 123.6 84 67.9
Zm00001eb126550 Zea mays HOM05D003767 ORTHO05D004507 1.4e-24 118.6 103 66.0
RcHm_v2.0_Chr2g0172961 Rosa chinensis HOM05D003767 ORTHO05D004507 2.1e-23 114.8 64 84.4
TAR636G2499 Trochodendron aralioides HOM05D003767 ORTHO05D004507 6.1e-23 113.2 77 71.4
RcHm_v2.0_Chr2g0172981 Rosa chinensis HOM05D003767 ORTHO05D004507 8.8e-22 109.4 134 46.3
Sabra13G0027500 Salix brachista HOM05D004613 ORTHO05D006095 8.8e-22 109.4 63 79.4
Zm00001eb115470 Zea mays HOM05D003767 ORTHO05D004507 9.1e-19 99.4 85 62.4
RcHm_v2.0_Chr2g0172971 Rosa chinensis HOM05D003767 ORTHO05D004507 1.3e-17 95.5 64 65.6
A10p03590 Brassica napus HOM05D003767 ORTHO05D004507 3.8e-17 94.0 66 63.6
CAN.G73.7 Capsicum annuum HOM05D003767 ORTHO05D000047 6.5e-17 93.2 57 73.7
Zm00001eb275300 Zea mays HOM05D003767 ORTHO05D004507 5.5e-16 90.1 81 63.0
SMO304G0024 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 2.8e-12 77.8 161 36.6
RcHm_v2.0_Chr2g0172951 Rosa chinensis HOM05D003767 ORTHO05D004507 1.0e-09 69.3 51 62.7
RcHm_v2.0_Chr6g0303351 Rosa chinensis HOM05D003767 ORTHO05D004507 1.0e-09 69.3 48 70.8
SMO164G0207 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 6.5e-09 66.6 111 39.6


User provided reference genes

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