Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.006G094500 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 0.0e+00 1089.7 544 100.0
VMungo0540G0577 Vigna mungo HOM05D003767 ORTHO05D004507 2.1e-289 998.4 544 92.3
Glyma.03G240600 Glycine max HOM05D003767 ORTHO05D004507 9.1e-277 956.4 552 88.6
Glyma.19G237700 Glycine max HOM05D003767 ORTHO05D004507 4.7e-273 944.1 551 87.1
Lj1g0000488 Lotus japonicus HOM05D003767 ORTHO05D004507 6.4e-230 800.8 550 74.2
TPR.G33204 Trifolium pratense HOM05D003767 ORTHO05D004507 5.6e-218 761.1 573 68.9
Ca_09375_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 4.5e-215 751.5 475 77.5
Glyma.19G237800 Glycine max HOM05D003767 ORTHO05D004507 2.7e-212 742.3 520 71.7
Psat3g009920 Pisum sativum HOM05D003767 ORTHO05D004507 6.0e-212 741.1 477 75.3
Medtr7g113890 Medicago truncatula HOM05D003767 ORTHO05D004507 1.5e-210 736.5 476 74.6
TPR.G33164 Trifolium pratense HOM05D003767 ORTHO05D004507 1.5e-210 736.5 469 75.5
Glyma.19G237900 Glycine max HOM05D003767 ORTHO05D004507 4.3e-210 734.9 473 74.2
arahy.Tifrunner.gnm1.ann1.1T3PYK Arachis hypogaea HOM05D003767 ORTHO05D004507 7.4e-210 734.2 561 66.5
Medtr7g113880 Medicago truncatula HOM05D003767 ORTHO05D004507 1.3e-209 733.4 553 69.1
arahy.Tifrunner.gnm1.ann1.RYM43V Arachis hypogaea HOM05D003767 ORTHO05D004507 1.4e-208 729.9 555 66.8
Phvul.006G094600 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 5.8e-207 724.5 539 67.7
Lj1g0009738 Lotus japonicus HOM05D003767 ORTHO05D004507 1.0e-206 723.8 466 75.1
CANSAT54G0870 Cannabis sativa HOM05D003767 ORTHO05D004507 1.6e-204 716.5 533 67.4
Phvul.006G094700 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 1.9e-202 709.5 487 71.9
Gohir.A11G224810 Gossypium hirsutum HOM05D003767 ORTHO05D004507 1.4e-200 703.4 479 69.5
Prupe.6G331000 Prunus persica HOM05D003767 ORTHO05D004507 9.0e-200 700.7 521 66.4
Gohir.D11G232600 Gossypium hirsutum HOM05D003767 ORTHO05D004507 1.2e-199 700.3 479 68.9
MELO3C015345.2 Cucumis melo HOM05D003767 ORTHO05D004507 1.5e-199 699.9 516 66.9
Potri.013G026800 Populus trichocarpa HOM05D003767 ORTHO05D004507 1.5e-199 699.9 477 69.2
Thecc.02G212900 Theobroma cacao HOM05D003767 ORTHO05D004507 2.0e-199 699.5 487 67.4
Potri.005G038100 Populus trichocarpa HOM05D003767 ORTHO05D004507 2.6e-199 699.1 474 69.6
Gorai.003G066300 Gossypium raimondii HOM05D003767 ORTHO05D004507 3.4e-199 698.7 483 68.7
Ca_09376_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 5.9e-199 698.0 465 72.7
Sc09g0003380 Simmondsia chinensis HOM05D003767 ORTHO05D004507 1.7e-198 696.4 522 65.9
Duzib147G0043 Durio zibethinus HOM05D003767 ORTHO05D004507 3.8e-198 695.3 473 68.7
TAR365G0614 Trochodendron aralioides HOM05D003767 ORTHO05D004507 3.8e-198 695.3 545 63.7
Lalb_Chr18g0045501 Lupinus albus HOM05D003767 ORTHO05D004507 8.5e-198 694.1 527 66.8
DCAR_029443 Daucus carota HOM05D003767 ORTHO05D004507 1.4e-197 693.3 515 66.0
Manes.09G162900 Manihot esculenta HOM05D003767 ORTHO05D004507 1.6e-196 689.9 516 65.1
Ciclev10000728m.g Citrus clementina HOM05D003767 ORTHO05D004507 7.9e-196 687.6 477 69.4
Eucgr.H04452 Eucalyptus grandis HOM05D003767 ORTHO05D004507 7.9e-196 687.6 484 67.8
DCAR_005538 Daucus carota HOM05D003767 ORTHO05D004507 1.4e-195 686.8 471 69.6
Cfa006539 Carpinus fangiana HOM05D003767 ORTHO05D004507 3.0e-195 685.6 480 69.0
Sed0026847 Sechium edule HOM05D003767 ORTHO05D004507 3.9e-195 685.3 516 64.7
Sp2g20600 Schrenkiella parvula HOM05D003767 ORTHO05D004507 2.0e-194 682.9 542 63.3
FvH4_6g05260 Fragaria vesca HOM05D003767 ORTHO05D004507 7.4e-194 681.0 496 67.1
Manes.08G123500 Manihot esculenta HOM05D003767 ORTHO05D004507 1.3e-193 680.2 474 67.3
PGR031G1040 Punica granatum HOM05D003767 ORTHO05D004507 1.7e-193 679.9 535 63.2
CARHR185970 Cardamine hirsuta HOM05D003767 ORTHO05D004507 4.8e-193 678.3 540 62.6
CiPaw.08G167300 Carya illinoinensis HOM05D003767 ORTHO05D004507 4.8e-193 678.3 484 66.9
Thhalv10003956m.g Eutrema salsugineum HOM05D003767 ORTHO05D004507 2.4e-192 676.0 545 62.4
Hma1.2p1_0666F.1_g199390 Hydrangea macrophylla HOM05D003767 ORTHO05D004507 2.4e-192 676.0 474 67.1
A09p05240 Brassica napus HOM05D003767 ORTHO05D004507 3.1e-192 675.6 474 67.1
Oeu027914.1 Olea europaea HOM05D003767 ORTHO05D004507 3.1e-192 675.6 540 62.8
ECA238G2357 Erigeron canadensis HOM05D003767 ORTHO05D004507 4.1e-192 675.2 474 67.7
VMungo0540G2084 Vigna mungo HOM05D003767 ORTHO05D004507 5.3e-192 674.9 474 70.3
Actinidia23606 Actinidia chinensis HOM05D003767 ORTHO05D004507 6.9e-192 674.5 480 67.1
BolC7t44598H Brassica oleracea HOM05D003767 ORTHO05D004507 6.9e-192 674.5 478 68.0
vmacro05036 Vaccinium macrocarpon HOM05D003767 ORTHO05D004507 9.1e-192 674.1 529 62.4
BcaNung02467 Brassica carinata HOM05D003767 ORTHO05D004507 1.5e-191 673.3 474 67.9
C07p40700 Brassica napus HOM05D003767 ORTHO05D004507 1.5e-191 673.3 474 67.9
GSVIVG01022056001 Vitis vinifera HOM05D003767 ORTHO05D004507 1.5e-191 673.3 478 67.6
TWI56G0745 Tripterygium wilfordii HOM05D003767 ORTHO05D004507 3.4e-191 672.2 525 63.4
BraA06t26680Z Brassica rapa HOM05D003767 ORTHO05D004507 5.0e-190 668.3 474 67.7
THA.LOC104821704 Tarenaya hassleriana HOM05D003767 ORTHO05D004507 5.0e-190 668.3 549 61.2
Solyc01g098610.4 Solanum lycopersicum HOM05D003767 ORTHO05D004507 6.5e-190 667.9 545 62.2
A06p37610 Brassica napus HOM05D003767 ORTHO05D004507 1.4e-189 666.8 474 67.5
C09p05700 Brassica napus HOM05D003767 ORTHO05D004507 2.5e-189 666.0 544 61.8
BraA09t36163Z Brassica rapa HOM05D003767 ORTHO05D004507 3.2e-189 665.6 477 66.2
Sopen01g042160 Solanum pennellii HOM05D003767 ORTHO05D004507 3.2e-189 665.6 560 61.2
Migut.F01584 Erythranthe guttata HOM05D003767 ORTHO05D004507 7.2e-189 664.5 482 66.4
PSO832G1867 Papaver somniferum HOM05D003767 ORTHO05D004507 9.4e-189 664.1 557 61.2
Aa31LG11G9150 Aethionema arabicum HOM05D003767 ORTHO05D004507 1.6e-188 663.3 549 61.6
MD04G1210100 Malus domestica HOM05D003767 ORTHO05D004507 1.6e-188 663.3 520 64.6
BcaNung04364 Brassica carinata HOM05D003767 ORTHO05D004507 2.7e-188 662.5 474 67.1
PGSC0003DMG400028599 Solanum tuberosum HOM05D003767 ORTHO05D004507 3.9e-187 658.7 477 66.2
PSO210G1178 Papaver somniferum HOM05D003767 ORTHO05D004507 1.1e-186 657.1 557 60.7
AUR62000859 Chenopodium quinoa HOM05D003767 ORTHO05D004507 1.5e-186 656.8 528 61.7
AT5G27380 Arabidopsis thaliana HOM05D003767 ORTHO05D004507 7.4e-186 654.4 540 60.4
QL03p004251 Quercus lobata HOM05D003767 ORTHO05D004507 9.7e-186 654.1 491 65.6
MSTRG.8108 Avicennia marina HOM05D003767 ORTHO05D004507 1.7e-185 653.3 504 63.7
AL6G39640 Arabidopsis lyrata HOM05D003767 ORTHO05D004507 2.2e-185 652.9 550 60.0
Carub.0006s2517 Capsella rubella HOM05D003767 ORTHO05D004507 1.1e-184 650.6 473 64.7
Aqoxy5G00559 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 2.4e-184 649.4 547 59.6
COL.COLO4_12128 Corchorus olitorius HOM05D003767 ORTHO05D004507 5.3e-184 648.3 478 66.9
FAN14G3644 Fragaria x ananassa HOM05D003767 ORTHO05D004507 5.3e-184 648.3 496 65.3
FAN14G0860 Fragaria x ananassa HOM05D003767 ORTHO05D004507 1.2e-183 647.1 518 64.1
DCAR_002932 Daucus carota HOM05D003767 ORTHO05D004507 7.7e-183 644.4 471 67.3
Psat3g009360 Pisum sativum HOM05D003767 ORTHO05D004507 1.0e-182 644.0 523 62.7
BcaB04g19665 Brassica carinata HOM05D003767 ORTHO05D004507 1.3e-182 643.7 542 61.1
RcHm_v2.0_Chr3g0453991 Rosa chinensis HOM05D003767 ORTHO05D004507 2.2e-182 642.9 539 60.9
BcaC04g23683 Brassica carinata HOM05D003767 ORTHO05D004507 5.0e-182 641.7 544 60.3
FAN05G2944 Fragaria x ananassa HOM05D003767 ORTHO05D004507 8.5e-182 641.0 497 65.6
MD12G1224500 Malus domestica HOM05D003767 ORTHO05D004507 1.4e-181 640.2 548 60.9
BolC9t53499H Brassica oleracea HOM05D003767 ORTHO05D004507 2.5e-181 639.4 544 60.1
Nitab4.5_0004940g0030 Nicotiana tabacum HOM05D003767 ORTHO05D004507 2.5e-181 639.4 533 60.6
ECA238G1346 Erigeron canadensis HOM05D003767 ORTHO05D004507 3.2e-181 639.0 469 65.7
unitig_26.g9470 Utricularia gibba HOM05D003767 ORTHO05D004507 4.2e-181 638.6 553 59.0
Cc02_g32590 Coffea canephora HOM05D003767 ORTHO05D004507 9.4e-181 637.5 569 59.2
Lsat_1_v5_gn_2_64341 Lactuca sativa HOM05D003767 ORTHO05D004507 9.4e-181 637.5 531 61.0
EL10Ac4g09299 Beta vulgaris HOM05D003767 ORTHO05D004507 4.7e-180 635.2 538 60.2
RhsimUnG0080300 Rhododendron simsii HOM05D003767 ORTHO05D004507 1.0e-179 634.0 563 58.6
SalBow6G1775 Salvia bowleyana HOM05D003767 ORTHO05D003551 6.7e-179 631.3 481 65.3
SGA_v2.0_scaffold13G06464 Striga asiatica HOM05D003767 ORTHO05D004507 8.8e-179 630.9 474 65.4
Hund07038 Selenicereus undatus HOM05D003767 ORTHO05D004507 3.3e-178 629.0 540 59.4
AUR62005115 Chenopodium quinoa HOM05D003767 ORTHO05D004507 4.4e-178 628.6 597 55.4
ClCG03G016760 Citrullus lanatus HOM05D003767 ORTHO05D004507 7.4e-178 627.9 645 52.4
CAN.G1134.12 Capsicum annuum HOM05D003767 ORTHO05D004507 2.2e-177 626.3 473 65.3
Aqoxy2G03198 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 8.2e-177 624.4 497 63.2
CSS0020414 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 4.1e-176 622.1 513 61.4
Lj9A681G36 Lonicera japonica HOM05D003767 ORTHO05D004507 1.2e-175 620.5 459 66.0
Rhsim07G0179200 Rhododendron simsii HOM05D003767 ORTHO05D004507 2.6e-175 619.4 561 57.8
Os12g0528400 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 1.1e-173 614.0 458 64.2
FAN09G3025 Fragaria x ananassa HOM05D003767 ORTHO05D004507 5.5e-173 611.7 496 62.5
Os11g0642800 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 1.2e-172 610.5 462 63.4
CSS0005723 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 8.0e-172 607.8 513 60.8
Os12g0263000 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 2.5e-165 586.3 464 61.0
MBI17_g18114_MAGBIO Magnolia biondii HOM05D003767 ORTHO05D004507 2.9e-158 562.8 589 53.8
Cpa.g.sc48.5 Carica papaya HOM05D003767 ORTHO05D004507 1.4e-152 543.9 488 58.4
Mapoly0002s0041 Marchantia polymorpha HOM05D003767 ORTHO05D004507 7.5e-146 521.5 463 55.7
Peaxi162Scf00434g00336 Petunia axillaris HOM05D003767 ORTHO05D004507 7.5e-146 521.5 543 53.6
Ah.06g190170 Amaranthus hybridus HOM05D003767 ORTHO05D004507 7.0e-144 515.0 534 51.7
Atru.chr2.496 Acer truncatum HOM05D003767 ORTHO05D004507 7.8e-143 511.5 363 66.7
Zm00001eb137820 Zea mays HOM05D003767 ORTHO05D004507 1.3e-142 510.8 391 63.4
CSS0007130 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 3.9e-142 509.2 366 65.8
Pp3c1_36280 Physcomitrium patens HOM05D003767 ORTHO05D004507 6.2e-140 501.9 470 53.8
SMO271G0026 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 3.5e-135 486.1 470 51.5
FAN05G1904 Fragaria x ananassa HOM05D003767 ORTHO05D004507 2.1e-132 476.9 504 51.8
Zm00001eb115490 Zea mays HOM05D003767 ORTHO05D004507 3.1e-131 473.0 362 63.0
Actinidia05727 Actinidia chinensis HOM05D003767 ORTHO05D004507 2.6e-130 469.9 480 52.7
CsaV3_1G039210 Cucumis sativus L. HOM05D003767 ORTHO05D004507 3.4e-130 469.5 343 67.1
Nitab4.5_0001423g0150 Nicotiana tabacum HOM05D003767 ORTHO05D004507 1.1e-125 454.5 361 62.0
Sabra05G0038000 Salix brachista HOM05D003767 ORTHO05D004507 5.2e-123 445.7 326 66.0
HPP92_001826 Vanilla planifolia HOM05D003767 ORTHO05D004507 4.6e-119 432.6 381 58.8
VMungo0540G2112 Vigna mungo HOM05D003767 ORTHO05D004507 3.3e-117 426.4 350 64.9
Nn1g08367 Nelumbo nucifera HOM05D003767 ORTHO05D004507 5.8e-114 415.6 288 68.4
Haze_04251 Corylus avellana HOM05D003767 ORTHO05D004507 1.8e-107 394.0 357 59.7
Cre17.g708800 Chlamydomonas reinhardtii HOM05D003767 ORTHO05D004507 4.0e-99 366.3 482 41.5
HanXRQChr10g0295061 Helianthus annuus HOM05D003767 ORTHO05D004507 9.0e-99 365.2 243 70.4
PRCOL_00004575 Prasinoderma coloniale HOM05D003767 ORTHO05D004507 1.2e-98 364.8 475 42.3
Lalb_Chr15g0077051 Lupinus albus HOM05D003767 ORTHO05D004507 3.0e-94 350.1 219 76.7
HanXRQChr14g0446461 Helianthus annuus HOM05D003767 ORTHO05D004507 1.0e-89 335.1 217 71.4
HanXRQChr10g0295071 Helianthus annuus HOM05D003767 ORTHO05D004507 5.7e-85 319.3 237 65.0
FAN02G0487 Fragaria x ananassa HOM05D003767 ORTHO05D004507 7.4e-85 318.9 255 64.3
SGA_v2.0_scaffold499G52492 Striga asiatica HOM05D003767 ORTHO05D004507 1.6e-84 317.8 257 61.5
MCO07G639 Micromonas commoda HOM05D003767 ORTHO05D004507 2.8e-84 317.0 457 38.1
HanXRQChr14g0446471 Helianthus annuus HOM05D003767 ORTHO05D004507 4.8e-84 316.2 277 58.5
ATR0626G007 Amborella trichopoda HOM05D003767 ORTHO05D004507 2.0e-82 310.8 212 67.9
Lalb_Chr15g0077061 Lupinus albus HOM05D003767 ORTHO05D004507 7.2e-80 302.4 211 68.7
ATR0626G021 Amborella trichopoda HOM05D003767 ORTHO05D004507 3.9e-78 296.6 290 53.4
AagrBONN_evm.TU.Sc2ySwM_117.2518 Anthoceros agrestis HOM05D003767 ORTHO05D004507 1.6e-71 274.6 292 49.7
COL.COLO4_24985 Corchorus olitorius HOM05D003767 ORTHO05D004507 1.4e-70 271.6 187 72.2
CBR_g15993 Chara braunii HOM05D003767 ORTHO05D004507 1.7e-68 264.6 493 33.9
Sabra05G0037900 Salix brachista HOM05D003767 ORTHO05D004507 4.4e-61 240.0 163 71.2
Actinidia24503 Actinidia chinensis HOM05D003767 ORTHO05D004507 6.5e-57 226.1 270 48.1
Cfa024552 Carpinus fangiana HOM05D003767 ORTHO05D004507 8.5e-57 225.7 462 32.7
COL.COLO4_10335 Corchorus olitorius HOM05D003767 ORTHO05D004507 6.3e-52 209.5 184 60.9
SEGI_25900 Sequoiadendron giganteum HOM05D003767 ORTHO05D004507 1.2e-50 205.3 175 56.6
SMO304G0030 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 1.2e-47 195.3 275 42.5
Nn1g08361 Nelumbo nucifera HOM05D003767 ORTHO05D004507 2.0e-42 177.9 147 60.5
Nn1g02104 Nelumbo nucifera HOM05D003767 ORTHO05D004507 1.4e-38 165.2 125 60.0
Eucgr.H04446 Eucalyptus grandis HOM05D003767 ORTHO05D004507 2.0e-37 161.4 114 63.2
SEGI_31082 Sequoiadendron giganteum HOM05D003767 ORTHO05D004507 2.0e-37 161.4 137 59.1
CDE02G2107 Ceratophyllum demersum HOM05D000488 ORTHO05D000347 2.0e-34 151.4 124 56.5
BolC5t32099H Brassica oleracea HOM05D003767 ORTHO05D041347 1.5e-32 145.2 322 35.1
A10p14120 Brassica napus HOM05D000085 ORTHO05D001756 1.9e-32 144.8 113 58.4
C05p33690 Brassica napus HOM05D003767 ORTHO05D041347 1.0e-30 139.0 321 32.7
CSS0000499 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 2.3e-30 137.9 80 78.8
SGA_v2.0_scaffold71G23819 Striga asiatica HOM05D001920 ORTHO05D004895 1.5e-29 135.2 81 75.3
BcaC05g27416 Brassica carinata HOM05D003767 ORTHO05D004507 7.5e-29 132.9 152 49.3
CAN.G299.1 Capsicum annuum HOM05D003767 ORTHO05D004507 9.8e-29 132.5 88 68.2
Zm00001eb126550 Zea mays HOM05D003767 ORTHO05D004507 1.9e-27 128.3 102 66.7
TAR636G1925 Trochodendron aralioides HOM05D003767 ORTHO05D004507 3.2e-27 127.5 76 78.9
Glyma.03G240651 Glycine max HOM05D003767 ORTHO05D004507 3.3e-24 117.5 123 55.3
RcHm_v2.0_Chr2g0172981 Rosa chinensis HOM05D003767 ORTHO05D004507 2.8e-23 114.4 169 41.4
Psat1g075760 Pisum sativum HOM05D003767 ORTHO05D004507 4.0e-22 110.5 84 60.7
Sabra13G0027500 Salix brachista HOM05D004613 ORTHO05D006095 8.9e-22 109.4 63 81.0
RcHm_v2.0_Chr2g0172961 Rosa chinensis HOM05D003767 ORTHO05D004507 1.2e-21 109.0 64 78.1
A10p03590 Brassica napus HOM05D003767 ORTHO05D004507 5.8e-21 106.7 61 75.4
VMungo0540G1019 Vigna mungo HOM05D003767 ORTHO05D004507 1.7e-20 105.1 78 57.7
Zm00001eb275300 Zea mays HOM05D003767 ORTHO05D004507 2.9e-20 104.4 80 67.5
TAR636G2499 Trochodendron aralioides HOM05D003767 ORTHO05D004507 3.7e-20 104.0 77 61.0
Zm00001eb115470 Zea mays HOM05D003767 ORTHO05D004507 1.4e-19 102.1 77 64.9
RcHm_v2.0_Chr2g0172971 Rosa chinensis HOM05D003767 ORTHO05D004507 1.1e-16 92.4 64 64.1
CAN.G73.7 Capsicum annuum HOM05D003767 ORTHO05D000047 6.2e-15 86.7 55 67.3
SMO304G0024 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 4.0e-14 84.0 161 37.3
RcHm_v2.0_Chr6g0303351 Rosa chinensis HOM05D003767 ORTHO05D004507 2.7e-10 71.2 48 70.8
SMO164G0207 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 3.9e-09 67.4 111 41.4
SMO164G0195 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 1.2e-07 62.4 162 32.1


User provided reference genes

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