Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.006G085500 Phaseolus vulgaris HOM05D000706 ORTHO05D012096 1.3e-123 446.4 225 100.0
Glyma.11G208500 Glycine max HOM05D000706 ORTHO05D001554 8.9e-69 264.2 250 60.8
VMungo0540G0276 Vigna mungo HOM05D000706 ORTHO05D012096 1.4e-53 213.8 211 58.3
Lj6g0005324 Lotus japonicus HOM05D000706 ORTHO05D001554 1.3e-38 164.1 226 46.5
Lalb_Chr18g0053861 Lupinus albus HOM05D000706 ORTHO05D012096 2.2e-35 153.3 228 46.1
Medtr3g064290 Medicago truncatula HOM05D000706 ORTHO05D001554 1.6e-30 137.1 224 43.3
Medtr3g064260 Medicago truncatula HOM05D000706 ORTHO05D001554 2.2e-30 136.7 221 39.8
arahy.Tifrunner.gnm1.ann1.3KND2G Arachis hypogaea HOM05D000706 ORTHO05D001554 4.5e-28 129.0 149 50.3
Medtr3g064250 Medicago truncatula HOM05D000706 ORTHO05D001554 3.2e-26 122.9 224 42.0
arahy.Tifrunner.gnm1.ann1.2RX12T Arachis hypogaea HOM05D000706 ORTHO05D001554 7.9e-25 118.2 147 48.3
Medtr3g064270 Medicago truncatula HOM05D000706 ORTHO05D001554 5.1e-24 115.5 217 38.2
Medtr3g064280 Medicago truncatula HOM05D000706 ORTHO05D001554 6.7e-24 115.2 217 37.8
QL02p102391 Quercus lobata HOM05D043302 ORTHO05D012096 4.2e-18 95.9 96 52.1
QL02p103028 Quercus lobata HOM05D043302 ORTHO05D012096 4.2e-18 95.9 96 52.1
MD15G1440800 Malus domestica HOM05D000706 ORTHO05D012096 3.6e-17 92.8 102 47.1
Ca_09585_v3 Cicer arietinum L. HOM05D005973 ORTHO05D007285 1.0e-16 91.3 82 50.0
Manes.10G110800 Manihot esculenta HOM05D000706 ORTHO05D001554 3.9e-16 89.4 98 44.9
Ca_17061_v3 Cicer arietinum L. HOM05D000706 ORTHO05D001554 6.7e-16 88.6 85 48.2
Dinv29666 Davidia involucrata HOM05D000706 ORTHO05D001554 7.4e-15 85.1 107 43.9
MELO3C016482.2 Cucumis melo HOM05D000706 ORTHO05D001554 6.3e-14 82.0 130 30.8
Sed0004427 Sechium edule HOM05D000706 ORTHO05D001554 1.4e-13 80.9 91 44.0
Prupe.1G582800 Prunus persica HOM05D000706 ORTHO05D001554 2.4e-13 80.1 87 46.0
GSVIVG01023195001 Vitis vinifera HOM05D000706 ORTHO05D001554 9.1e-13 78.2 102 37.3
ClCG10G007330 Citrullus lanatus HOM05D000706 ORTHO05D001554 1.2e-12 77.8 83 44.6
Lj3P1070T22 Lonicera japonica HOM05D017178 ORTHO05D012096 1.6e-12 77.4 125 34.4
RcHm_v2.0_Chr6g0272281 Rosa chinensis HOM05D000706 ORTHO05D012096 1.6e-12 77.4 116 36.2
Gohir.D04G177400 Gossypium hirsutum HOM05D000706 ORTHO05D001554 1.0e-11 74.7 99 42.4
Lj5A276G88 Lonicera japonica HOM05D017178 ORTHO05D012096 1.0e-11 74.7 125 33.6
TAR628G1033 Trochodendron aralioides HOM05D000706 ORTHO05D012096 1.3e-11 74.3 121 35.5
Gorai.012G170300 Gossypium raimondii HOM05D000706 ORTHO05D001554 1.7e-11 73.9 99 41.4
Hma1.2p1_0157F.1_g069030 Hydrangea macrophylla HOM05D017178 ORTHO05D012096 1.7e-11 73.9 82 42.7
Hma1.2p1_1368F.1_g278556 Hydrangea macrophylla HOM05D017178 ORTHO05D012096 1.7e-11 73.9 82 42.7
GSVIVG01023170001 Vitis vinifera HOM05D000706 ORTHO05D012096 1.7e-11 73.9 97 38.1
SHI25322 Sapria himalayana HOM05D000706 ORTHO05D012096 2.9e-11 73.2 95 37.9
Rhsim06G0200400 Rhododendron simsii HOM05D017178 ORTHO05D012096 3.8e-11 72.8 106 38.7
Ah.03g136980 Amaranthus hybridus HOM05D000572 ORTHO05D000840 8.5e-11 71.6 83 42.2
Cc02_g27620 Coffea canephora HOM05D000706 ORTHO05D001554 8.5e-11 71.6 120 39.2
Sed0026982 Sechium edule HOM05D000706 ORTHO05D012096 1.1e-10 71.2 110 35.5
TWI59G0710 Tripterygium wilfordii HOM05D000706 ORTHO05D001554 1.5e-10 70.9 98 40.8
GSVIVG01023197001 Vitis vinifera HOM05D000706 ORTHO05D012096 1.5e-10 70.9 86 39.5
Actinidia16541 Actinidia chinensis HOM05D000706 ORTHO05D001554 1.9e-10 70.5 136 34.6
Aqoxy7G00126_Aqoxy7G00127 Aquilegia oxysepala HOM05D000706 ORTHO05D001554 1.9e-10 70.5 127 37.0
Duzib132G0489 Durio zibethinus HOM05D000706 ORTHO05D001554 1.9e-10 70.5 122 34.4
CSS0020817 Camellia sinensis var. sinensis HOM05D000185 ORTHO05D001554 3.2e-10 69.7 92 40.2
PSO447G0242 Papaver somniferum HOM05D000706 ORTHO05D001554 3.2e-10 69.7 153 30.7
TAR376G1119 Trochodendron aralioides HOM05D000706 ORTHO05D001554 3.2e-10 69.7 124 33.9
MELO3C012577.2 Cucumis melo HOM05D000706 ORTHO05D001554 4.2e-10 69.3 121 37.2
Lj3P665T11 Lonicera japonica HOM05D017178 ORTHO05D012096 4.2e-10 69.3 129 36.4
SalBow6G2696 Salvia bowleyana HOM05D000706 ORTHO05D001554 5.5e-10 68.9 106 36.8
Rhsim09G0000400 Rhododendron simsii HOM05D000706 ORTHO05D001554 9.4e-10 68.2 109 34.9
EL10Ac4g09693 Beta vulgaris HOM05D000706 ORTHO05D001554 1.2e-09 67.8 101 35.6
COL.COLO4_12141 Corchorus olitorius HOM05D000706 ORTHO05D001554 1.2e-09 67.8 88 39.8
Duzib147G0053 Durio zibethinus HOM05D000706 ORTHO05D001554 1.2e-09 67.8 86 40.7
Sc16g0009760 Simmondsia chinensis HOM05D000706 ORTHO05D001554 1.2e-09 67.8 95 40.0
FvH4_2g12310 Fragaria vesca HOM05D000706 ORTHO05D001554 1.6e-09 67.4 83 43.4
FAN27G2281 Fragaria x ananassa HOM05D000706 ORTHO05D001554 1.6e-09 67.4 83 43.4
PSO210G5296 Papaver somniferum HOM05D000706 ORTHO05D001554 2.1e-09 67.0 143 35.0
Cfa019817 Carpinus fangiana HOM05D000706 ORTHO05D001554 2.7e-09 66.6 91 39.6
Thecc.02G012800 Theobroma cacao HOM05D000706 ORTHO05D001554 2.7e-09 66.6 122 33.6
Thecc.01G144400 Theobroma cacao HOM05D000706 ORTHO05D001554 6.1e-09 65.5 86 41.9
FAN23G1421 Fragaria x ananassa HOM05D000706 ORTHO05D001554 1.0e-08 64.7 122 35.2
Gohir.D02G153300 Gossypium hirsutum HOM05D000706 ORTHO05D001554 1.0e-08 64.7 118 33.9
Gorai.005G172400 Gossypium raimondii HOM05D000706 ORTHO05D001554 1.0e-08 64.7 118 33.9
Sabra04G0084500 Salix brachista HOM05D000706 ORTHO05D001554 1.0e-08 64.7 99 34.3
FAN28G2355 Fragaria x ananassa HOM05D000706 ORTHO05D001554 1.4e-08 64.3 122 34.4
Peaxi162Scf00428g00822 Petunia axillaris HOM05D000706 ORTHO05D001554 1.4e-08 64.3 91 38.5
FvH4_1g25810 Fragaria vesca HOM05D000706 ORTHO05D001554 1.8e-08 63.9 122 34.4
Nitab4.5_0000634g0010 Nicotiana tabacum HOM05D000706 ORTHO05D001554 1.8e-08 63.9 90 36.7
RcHm_v2.0_Chr3g0484911 Rosa chinensis HOM05D000706 ORTHO05D001554 1.8e-08 63.9 123 34.1
Migut.B01326 Erythranthe guttata HOM05D000706 ORTHO05D001554 2.3e-08 63.5 91 34.1
SGA_v2.0_scaffold167G38452 Striga asiatica HOM05D000706 ORTHO05D001554 2.3e-08 63.5 103 34.0
CiPaw.06G001000 Carya illinoinensis HOM05D000706 ORTHO05D001554 3.0e-08 63.2 186 29.0
Ca_25266_v3 Cicer arietinum L. HOM05D000706 ORTHO05D001554 3.0e-08 63.2 116 32.8
Dinv09371 Davidia involucrata HOM05D000706 ORTHO05D001554 3.0e-08 63.2 94 37.2
Sed0009552 Sechium edule HOM05D000706 ORTHO05D001554 3.0e-08 63.2 106 35.8
EL10Ac6g14021 Beta vulgaris HOM05D000706 ORTHO05D001554 4.0e-08 62.8 96 37.5
PGR102G2630 Punica granatum HOM05D000706 ORTHO05D001554 5.2e-08 62.4 98 34.7
Eucgr.H05064 Eucalyptus grandis HOM05D000706 ORTHO05D001554 6.7e-08 62.0 121 37.2
CsaV3_7G023180 Cucumis sativus L. HOM05D000706 ORTHO05D001554 8.8e-08 61.6 88 38.6
Nitab4.5_0003361g0020 Nicotiana tabacum HOM05D000706 ORTHO05D001554 8.8e-08 61.6 123 30.1
FAN19G2540 Fragaria x ananassa HOM05D000706 ORTHO05D001554 1.1e-07 61.2 122 33.6
ClCG09G022930 Citrullus lanatus HOM05D000706 ORTHO05D001554 1.5e-07 60.8 92 39.1
FAN26G0079 Fragaria x ananassa HOM05D000706 ORTHO05D001554 1.5e-07 60.8 122 33.6
Medtr6g065790 Medicago truncatula HOM05D000706 ORTHO05D001554 1.5e-07 60.8 90 34.4
Gohir.D11G046150 Gossypium hirsutum HOM05D000706 ORTHO05D001633 2.0e-07 60.5 91 33.0
TWI79G1627 Tripterygium wilfordii HOM05D000706 ORTHO05D001554 2.0e-07 60.5 104 30.8
Cpa.g.sc86.38 Carica papaya HOM05D000706 ORTHO05D001554 4.4e-07 59.3 116 31.0
PSO170G6368 Papaver somniferum HOM05D000706 ORTHO05D001633 5.7e-07 58.9 58 43.1
PSO210G2352 Papaver somniferum HOM05D000706 ORTHO05D001633 5.7e-07 58.9 58 43.1
PSO675G4911 Papaver somniferum HOM05D000706 ORTHO05D001554 5.7e-07 58.9 62 41.9
Duzib248G0445 Durio zibethinus HOM05D000706 ORTHO05D001633 7.5e-07 58.5 57 43.9
Potri.004G133600 Populus trichocarpa HOM05D000706 ORTHO05D001554 7.5e-07 58.5 115 30.4
Atru.chr4.14_Atru.chr4.15 Acer truncatum HOM05D000706 ORTHO05D001554 9.7e-07 58.2 109 30.3
Ah.06g188410 Amaranthus hybridus HOM05D000706 ORTHO05D001554 9.7e-07 58.2 62 38.7
Duzib132G0594 Durio zibethinus HOM05D000706 ORTHO05D001633 9.7e-07 58.2 57 42.1
Duzib264G0704 Durio zibethinus HOM05D000706 ORTHO05D001633 9.7e-07 58.2 109 32.1
HanXRQChr17g0544101 Helianthus annuus HOM05D000706 ORTHO05D001633 9.7e-07 58.2 73 32.9
Lj5C190G5 Lonicera japonica HOM05D000706 ORTHO05D001633 9.7e-07 58.2 56 41.1
MD15G1140400 Malus domestica HOM05D000706 ORTHO05D001554 9.7e-07 58.2 88 37.5
Ciclev10026382m.g Citrus clementina HOM05D000706 ORTHO05D001554 1.3e-06 57.8 100 33.0
PSO541G1600 Papaver somniferum HOM05D000706 ORTHO05D001554 1.3e-06 57.8 62 40.3
Lj2g0014541 Lotus japonicus HOM05D000706 ORTHO05D001554 1.7e-06 57.4 125 32.0
Sp5g11090 Schrenkiella parvula HOM05D000706 ORTHO05D001633 1.7e-06 57.4 97 28.9
GSVIVG01000269001 Vitis vinifera HOM05D000706 ORTHO05D001554 1.7e-06 57.4 88 29.5
Aqoxy5G01350_Aqoxy5G01351 Aquilegia oxysepala HOM05D000706 ORTHO05D001554 2.2e-06 57.0 73 38.4
EL10Ac9g21648 Beta vulgaris HOM05D000706 ORTHO05D001633 2.2e-06 57.0 51 43.1
Gorai.007G049500 Gossypium raimondii HOM05D000706 ORTHO05D001633 2.2e-06 57.0 85 32.9
PGR042G1088 Punica granatum HOM05D000706 ORTHO05D001633 2.2e-06 57.0 69 34.8
Hund06279 Selenicereus undatus HOM05D000706 ORTHO05D001633 2.2e-06 57.0 60 38.3
Sopen01g033940 Solanum pennellii HOM05D000706 ORTHO05D001554 2.2e-06 57.0 226 26.5
Sc08g0000830 Simmondsia chinensis HOM05D000706 ORTHO05D001633 2.8e-06 56.6 69 33.3
Solyc01g086950.4 Solanum lycopersicum HOM05D000706 ORTHO05D001554 2.8e-06 56.6 98 35.7
CDE06G0276 Ceratophyllum demersum HOM05D000706 ORTHO05D001633 4.8e-06 55.8 59 37.3
COL.COLO4_17687 Corchorus olitorius HOM05D000706 ORTHO05D001554 4.8e-06 55.8 121 26.4
Manes.17G021800 Manihot esculenta HOM05D000706 ORTHO05D001554 4.8e-06 55.8 56 39.3
Nitab4.5_0002026g0060 Nicotiana tabacum HOM05D000001 ORTHO05D000003 4.8e-06 55.8 59 39.0
Pp3c15_12580 Physcomitrium patens HOM05D000706 ORTHO05D001633 4.8e-06 55.8 52 42.3
Pp3c15_12700 Physcomitrium patens HOM05D000706 ORTHO05D001633 4.8e-06 55.8 52 42.3
Hund07199 Selenicereus undatus HOM05D000706 ORTHO05D001554 4.8e-06 55.8 89 36.0
TPR.G23221 Trifolium pratense HOM05D000706 ORTHO05D001554 4.8e-06 55.8 95 35.8
TAR625G0367 Trochodendron aralioides HOM05D000706 ORTHO05D001633 4.8e-06 55.8 52 42.3
CiPaw.14G035600 Carya illinoinensis HOM05D000706 ORTHO05D001633 6.3e-06 55.5 57 36.8
Duzib052G0725 Durio zibethinus HOM05D000706 ORTHO05D001633 6.3e-06 55.5 57 40.4
ECA246G1141 Erigeron canadensis HOM05D000706 ORTHO05D001633 6.3e-06 55.5 90 30.0
Cpa.g.c41117 Carica papaya HOM05D000706 ORTHO05D001633 8.2e-06 55.1 64 35.9
AUR62006923 Chenopodium quinoa HOM05D000706 ORTHO05D001554 8.2e-06 55.1 59 39.0
Ca_15336_v3 Cicer arietinum L. HOM05D000706 ORTHO05D001633 8.2e-06 55.1 93 29.0
COL.COLO4_26035 Corchorus olitorius HOM05D000706 ORTHO05D001633 8.2e-06 55.1 57 38.6
Glyma.06G008300 Glycine max HOM05D000706 ORTHO05D001633 8.2e-06 55.1 62 37.1
Phvul.004G133700 Phaseolus vulgaris HOM05D000706 ORTHO05D001554 8.2e-06 55.1 87 32.2
VMungo1309G2301 Vigna mungo HOM05D000706 ORTHO05D001633 8.2e-06 55.1 62 35.5


User provided reference genes

Program Settings