Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.006G074100 Phaseolus vulgaris HOM05D004875 ORTHO05D005598 0.0e+00 2034.6 1014 100.0
VMungo0540G0701 Vigna mungo HOM05D004875 ORTHO05D005598 0.0e+00 1813.5 1014 88.5
Glyma.11G163900 Glycine max HOM05D004875 ORTHO05D005598 0.0e+00 1723.8 1019 84.4
Glyma.18G057100 Glycine max HOM05D004875 ORTHO05D005598 0.0e+00 1723.8 1019 84.5
Lalb_Chr20g0114691 Lupinus albus HOM05D004875 ORTHO05D005598 0.0e+00 1633.6 1014 79.1
Lj6g0003221 Lotus japonicus HOM05D004875 ORTHO05D005598 0.0e+00 1610.1 1015 79.3
TPR.G25698 Trifolium pratense HOM05D004875 ORTHO05D005598 0.0e+00 1608.6 1015 78.7
Medtr3g465700 Medicago truncatula HOM05D004875 ORTHO05D005598 0.0e+00 1594.7 1016 78.6
Psat5g154480 Pisum sativum HOM05D004875 ORTHO05D005598 0.0e+00 1581.6 1015 77.3
arahy.Tifrunner.gnm1.ann1.7Z8DLY Arachis hypogaea HOM05D004875 ORTHO05D005598 0.0e+00 1494.6 1012 72.6
arahy.Tifrunner.gnm1.ann1.LY55DJ Arachis hypogaea HOM05D004875 ORTHO05D005598 0.0e+00 1489.2 1012 72.2
QL01p026245 Quercus lobata HOM05D004875 ORTHO05D005598 0.0e+00 1427.9 1014 69.7
Cfa011778 Carpinus fangiana HOM05D004875 ORTHO05D005598 0.0e+00 1394.8 1017 68.5
Haze_24411 Corylus avellana HOM05D004875 ORTHO05D005598 0.0e+00 1390.2 1078 65.3
FvH4_3g39760 Fragaria vesca HOM05D004875 ORTHO05D005598 0.0e+00 1385.2 1013 67.9
MD11G1058300 Malus domestica HOM05D004875 ORTHO05D005598 0.0e+00 1384.0 1015 67.6
CiPaw.13G069200 Carya illinoinensis HOM05D004875 ORTHO05D005598 0.0e+00 1381.3 1015 67.5
FAN21G2306 Fragaria x ananassa HOM05D004875 ORTHO05D005598 0.0e+00 1381.3 1019 67.4
FAN11G0831 Fragaria x ananassa HOM05D004875 ORTHO05D005598 0.0e+00 1378.2 1013 67.5
RcHm_v2.0_Chr5g0071641 Rosa chinensis HOM05D004875 ORTHO05D005598 0.0e+00 1375.1 1013 67.4
MD03G1056500 Malus domestica HOM05D004875 ORTHO05D005598 0.0e+00 1370.9 1015 67.1
Prupe.6G048400 Prunus persica HOM05D004875 ORTHO05D005598 0.0e+00 1367.8 986 68.7
FAN25G2145 Fragaria x ananassa HOM05D004875 ORTHO05D005598 0.0e+00 1360.9 997 67.4
FAN16G0994 Fragaria x ananassa HOM05D004875 ORTHO05D005598 0.0e+00 1360.5 997 67.7
Potri.013G152800 Populus trichocarpa HOM05D004875 ORTHO05D005598 0.0e+00 1357.8 1015 66.6
Thecc.09G357800 Theobroma cacao HOM05D004875 ORTHO05D005598 0.0e+00 1351.7 1015 67.0
CANSAT54G1540 Cannabis sativa HOM05D004875 ORTHO05D005598 0.0e+00 1347.8 1015 66.0
COL.COLO4_11154 Corchorus olitorius HOM05D004875 ORTHO05D005598 0.0e+00 1347.8 1014 65.8
Ciclev10030286m.g Citrus clementina HOM05D004875 ORTHO05D005598 0.0e+00 1338.9 1015 66.3
Manes.02G211800 Manihot esculenta HOM05D004875 ORTHO05D005598 0.0e+00 1329.7 1017 65.7
Gorai.009G113500 Gossypium raimondii HOM05D004875 ORTHO05D005598 0.0e+00 1325.1 1016 65.6
CSS0009670 Camellia sinensis var. sinensis HOM05D004875 ORTHO05D005598 0.0e+00 1321.6 1014 65.0
TWI31G0826 Tripterygium wilfordii HOM05D004875 ORTHO05D005598 0.0e+00 1308.9 1016 64.7
TAR633G2039 Trochodendron aralioides HOM05D004875 ORTHO05D005598 0.0e+00 1308.5 1012 63.2
Duzib168G1610 Durio zibethinus HOM05D004875 ORTHO05D005598 0.0e+00 1305.0 1015 64.4
TWI79G1304 Tripterygium wilfordii HOM05D004875 ORTHO05D005598 0.0e+00 1292.7 1016 63.7
Hma1.2p1_1692F.1_g297880 Hydrangea macrophylla HOM05D004875 ORTHO05D005598 0.0e+00 1289.2 1014 62.9
CSS0036828 Camellia sinensis var. sinensis HOM05D004875 ORTHO05D005598 0.0e+00 1286.9 1003 64.2
Sed0004894 Sechium edule HOM05D004875 ORTHO05D005598 0.0e+00 1283.1 1015 63.7
GSVIVG01024634001 Vitis vinifera HOM05D004875 ORTHO05D005598 0.0e+00 1281.9 989 64.1
vmacro02918 Vaccinium macrocarpon HOM05D004875 ORTHO05D005598 0.0e+00 1267.7 1063 60.7
Actinidia23196 Actinidia chinensis HOM05D004875 ORTHO05D005598 0.0e+00 1266.5 1011 63.4
Sabra13G0122800 Salix brachista HOM05D004875 ORTHO05D005598 0.0e+00 1262.3 1080 60.1
ClCG02G019240 Citrullus lanatus HOM05D004875 ORTHO05D005598 0.0e+00 1252.7 1014 62.9
CsaV3_6G015880 Cucumis sativus L. HOM05D004875 ORTHO05D005598 0.0e+00 1243.4 1016 61.9
Rhsim13G0064100 Rhododendron simsii HOM05D004875 ORTHO05D005598 0.0e+00 1239.9 1035 60.9
PGR102G0105 Punica granatum HOM05D004875 ORTHO05D005598 0.0e+00 1234.6 1009 62.0
Cc01_g14850 Coffea canephora HOM05D004875 ORTHO05D000053 0.0e+00 1233.8 990 62.0
Aqoxy1G01286 Aquilegia oxysepala HOM05D004875 ORTHO05D005598 0.0e+00 1226.5 1013 60.3
DCAR_018231 Daucus carota HOM05D004875 ORTHO05D005598 0.0e+00 1223.0 1014 60.4
CARHR272270 Cardamine hirsuta HOM05D004875 ORTHO05D005598 0.0e+00 1207.6 1019 60.2
Eucgr.B04004 Eucalyptus grandis HOM05D004875 ORTHO05D005598 0.0e+00 1206.0 1017 59.8
SGA_v2.0_scaffold146G36120 Striga asiatica HOM05D004875 ORTHO05D005598 0.0e+00 1206.0 1015 60.1
MSTRG.12688 Avicennia marina HOM05D004875 ORTHO05D005598 0.0e+00 1205.3 1016 59.5
SalBow2G1321 Salvia bowleyana HOM05D004875 ORTHO05D005598 0.0e+00 1204.5 1015 60.3
Sopen09g013270 Solanum pennellii HOM05D004875 ORTHO05D005598 0.0e+00 1201.8 1015 59.1
THA.LOC104799387 Tarenaya hassleriana HOM05D004875 ORTHO05D005598 0.0e+00 1199.1 1020 59.6
AL8G34640 Arabidopsis lyrata HOM05D004875 ORTHO05D005598 0.0e+00 1196.8 1019 59.7
AT5G58450 Arabidopsis thaliana HOM05D004875 ORTHO05D005598 0.0e+00 1196.0 1020 59.9
Lj1C127G1 Lonicera japonica HOM05D004875 ORTHO05D005598 0.0e+00 1194.9 1022 58.8
Carub.0008s1904 Capsella rubella HOM05D004875 ORTHO05D005598 0.0e+00 1193.3 1017 59.4
HanXRQChr08g0228771 Helianthus annuus HOM05D004875 ORTHO05D005598 0.0e+00 1182.9 1013 60.1
Sp6g20140 Schrenkiella parvula HOM05D004875 ORTHO05D005598 0.0e+00 1179.5 1020 59.5
BraA10t43642Z Brassica rapa HOM05D004875 ORTHO05D005598 0.0e+00 1176.4 1020 59.1
A10p15830 Brassica napus HOM05D004875 ORTHO05D005598 0.0e+00 1173.7 1020 59.0
AUR62001870 Chenopodium quinoa HOM05D004875 ORTHO05D005598 0.0e+00 1171.4 1013 58.7
Aa31LG11G230 Aethionema arabicum HOM05D004875 ORTHO05D005598 0.0e+00 1171.0 1026 58.4
BcaB08g36179 Brassica carinata HOM05D004875 ORTHO05D005598 0.0e+00 1169.1 1020 58.5
C09p50320 Brassica napus HOM05D004875 ORTHO05D005598 0.0e+00 1168.3 1018 58.8
BcaC04g19867 Brassica carinata HOM05D004875 ORTHO05D005598 0.0e+00 1164.8 1020 58.5
BolC9t57888H Brassica oleracea HOM05D004875 ORTHO05D005598 0.0e+00 1164.8 1020 58.5
AUR62009668 Chenopodium quinoa HOM05D004875 ORTHO05D005598 0.0e+00 1164.8 1013 58.4
Migut.N00759 Erythranthe guttata HOM05D004875 ORTHO05D005598 0.0e+00 1160.6 1016 58.1
Ca_15009_v3 Cicer arietinum L. HOM05D004875 ORTHO05D005598 0.0e+00 1154.4 754 76.1
HanXRQChr13g0386431 Helianthus annuus HOM05D004875 ORTHO05D005598 0.0e+00 1152.1 1008 59.0
ECA247G1423 Erigeron canadensis HOM05D004875 ORTHO05D005598 0.0e+00 1143.6 1007 58.2
MBI15_g31180_MAGBIO Magnolia biondii HOM05D004875 ORTHO05D005598 0.0e+00 1142.5 1019 56.9
Lsat_1_v5_gn_9_14720 Lactuca sativa HOM05D004875 ORTHO05D005598 0.0e+00 1139.8 1023 58.4
EL10Ac7g15921 Beta vulgaris HOM05D004875 ORTHO05D005598 0.0e+00 1116.7 1013 56.1
Gohir.D05G109200 Gossypium hirsutum HOM05D004875 ORTHO05D005598 0.0e+00 1100.5 770 70.6
Ah.08g215110 Amaranthus hybridus HOM05D004875 ORTHO05D005598 0.0e+00 1081.6 986 56.7
Hund05024 Selenicereus undatus HOM05D004875 ORTHO05D005598 0.0e+00 1075.8 1017 55.0
Gohir.A05G109100 Gossypium hirsutum HOM05D004875 ORTHO05D005598 2.1e-306 1055.8 777 68.0
Nn2g11010 Nelumbo nucifera HOM05D004875 ORTHO05D005598 1.0e-297 1026.9 797 64.7
ATR0594G111 Amborella trichopoda HOM05D004875 ORTHO05D005598 7.4e-296 1020.8 1017 52.9
Os05g0345400 Oryza sativa ssp. japonica HOM05D004875 ORTHO05D005598 1.1e-291 1006.9 1019 51.7
HPP92_003240 Vanilla planifolia HOM05D004875 ORTHO05D005598 6.0e-290 1001.1 1018 52.0
Thhalv10012545m.g Eutrema salsugineum HOM05D004875 ORTHO05D005598 9.7e-272 940.6 696 66.8
CDE04G2228 Ceratophyllum demersum HOM05D004875 ORTHO05D005598 1.1e-256 890.6 986 50.0
Actinidia32610 Actinidia chinensis HOM05D004875 ORTHO05D005598 2.6e-256 889.4 611 71.7
Dinv09669 Davidia involucrata HOM05D004875 ORTHO05D005598 3.6e-250 869.0 595 70.6
PSO349G0337 Papaver somniferum HOM05D004875 ORTHO05D005598 2.7e-242 842.8 1036 44.8
PSO765G0012 Papaver somniferum HOM05D004875 ORTHO05D005598 2.9e-236 822.8 1038 43.9
SEGI_14366 Sequoiadendron giganteum HOM05D004875 ORTHO05D005598 5.9e-229 798.5 996 45.3
Sc12g0001970 Simmondsia chinensis HOM05D004875 ORTHO05D005598 8.6e-220 768.1 780 51.2
CDE07G1129 Ceratophyllum demersum HOM05D004875 ORTHO05D005598 2.3e-212 743.4 1007 43.3
Zm00001eb286340 Zea mays HOM05D004875 ORTHO05D005598 2.3e-212 743.4 877 46.2
Solyc09g057910.3 Solanum lycopersicum HOM05D004875 ORTHO05D005598 4.6e-197 692.6 505 65.7
Peaxi162Scf00055g01011 Petunia axillaris HOM05D004875 ORTHO05D005598 1.4e-193 681.0 556 61.5
Atru.chr3.4118 Acer truncatum HOM05D004875 ORTHO05D005598 1.6e-186 657.5 454 71.6
Cpa.g.sc2.356 Carica papaya HOM05D004875 ORTHO05D005598 5.1e-180 636.0 551 58.1
AagrBONN_evm.TU.Sc2ySwM_228.3164 Anthoceros agrestis HOM05D004875 ORTHO05D005598 5.6e-179 632.5 1042 37.6
Cpa.g.sc2.355 Carica papaya HOM05D004875 ORTHO05D005598 5.3e-177 625.9 425 71.1
Mapoly0170s0019 Marchantia polymorpha HOM05D004875 ORTHO05D005598 9.9e-176 621.7 1033 38.4
Nitab4.5_0000002g0030 Nicotiana tabacum HOM05D004875 ORTHO05D005598 1.0e-167 595.1 522 59.4
Nitab4.5_0005130g0040 Nicotiana tabacum HOM05D004875 ORTHO05D005598 3.5e-165 586.6 573 54.1
Atru.chr3.4119 Acer truncatum HOM05D004875 ORTHO05D005598 1.9e-163 580.9 439 66.3
Pp3c18_5510 Physcomitrium patens HOM05D004875 ORTHO05D005598 6.1e-157 559.3 1026 35.2
Peaxi162Scf00055g00107 Petunia axillaris HOM05D004875 ORTHO05D005598 7.4e-155 552.4 513 54.6
Solyc09g057920.3 Solanum lycopersicum HOM05D004875 ORTHO05D005598 4.1e-145 520.0 513 52.8
Oeu027574.2 Olea europaea HOM05D004875 ORTHO05D005598 2.4e-137 494.2 460 52.4
SHI19214 Sapria himalayana HOM05D004875 ORTHO05D005598 2.6e-131 474.2 632 42.7
CBR_g50477 Chara braunii HOM05D004875 ORTHO05D005598 5.0e-111 406.8 1100 28.5
unitig_0.g437 Utricularia gibba HOM05D004875 ORTHO05D005598 1.6e-109 401.7 534 43.8
MELO3C025696.2 Cucumis melo HOM05D004875 ORTHO05D005598 6.8e-108 396.4 428 50.2
MELO3C025695.2 Cucumis melo HOM05D004875 ORTHO05D005598 4.4e-107 393.7 237 78.9
Oeu019275.2 Olea europaea HOM05D004875 ORTHO05D005598 5.4e-105 386.7 264 72.3
Sc12g0001960 Simmondsia chinensis HOM05D004875 ORTHO05D005598 7.8e-104 382.9 237 78.5
MELO3C027117.2 Cucumis melo HOM05D004875 ORTHO05D005598 4.4e-99 367.1 297 61.6
unitig_0.g436 Utricularia gibba HOM05D004875 ORTHO05D005598 1.6e-69 268.9 453 38.0
Nitab4.5_0005130g0030 Nicotiana tabacum HOM05D004875 ORTHO05D005598 1.7e-66 258.8 317 42.9
Nitab4.5_0000002g0020 Nicotiana tabacum HOM05D004875 ORTHO05D005598 2.2e-66 258.5 318 44.0
CAN.G3.43 Capsicum annuum HOM05D004875 ORTHO05D005598 7.1e-65 253.4 334 42.2
PSO541G6542 Papaver somniferum HOM05D004875 ORTHO05D005598 1.0e-58 233.0 391 38.9
PSO541G1704 Papaver somniferum HOM05D004875 ORTHO05D005598 1.6e-56 225.7 403 36.5
PSO532G0016 Papaver somniferum HOM05D004875 ORTHO05D005598 1.1e-54 219.5 402 35.3
CAN.G3.44 Capsicum annuum HOM05D004875 ORTHO05D005598 7.9e-48 196.8 110 85.5
C04p28250 Brassica napus HOM05D004875 ORTHO05D005598 3.0e-47 194.9 163 63.2
BolC4t24370H Brassica oleracea HOM05D004875 ORTHO05D005598 3.0e-47 194.9 163 63.2
PRCOL_00002473 Prasinoderma coloniale HOM05D004875 ORTHO05D005598 3.1e-44 184.9 742 26.1
Cre11.g475050 Chlamydomonas reinhardtii HOM05D004875 ORTHO05D005598 9.0e-44 183.3 814 25.2
PSO478G4214 Papaver somniferum HOM05D004875 ORTHO05D005598 3.0e-39 168.3 228 42.5
PSO541G5558 Papaver somniferum HOM05D004875 ORTHO05D005598 1.3e-37 162.9 297 35.7
PSO339G3761 Papaver somniferum HOM05D004875 ORTHO05D005598 8.2e-37 160.2 426 33.1
MCO11G770 Micromonas commoda HOM05D004875 ORTHO05D005598 4.1e-36 157.9 752 24.6
PSO170G5144 Papaver somniferum HOM05D004875 ORTHO05D005598 4.5e-35 154.5 422 32.2
SHI19217 Sapria himalayana HOM05D004875 ORTHO05D005598 4.7e-32 144.4 160 50.0
BcaC02g10491 Brassica carinata HOM05D004875 ORTHO05D005598 7.9e-32 143.7 120 63.3
PSO384G1619 Papaver somniferum HOM05D004875 ORTHO05D005598 2.6e-30 138.7 316 35.4
BcaC07g37054 Brassica carinata HOM05D004875 ORTHO05D005598 2.4e-28 132.1 122 61.5
C01p15940 Brassica napus HOM05D004875 ORTHO05D005598 6.5e-26 124.0 76 81.6
Lsat_1_v5_gn_9_14740 Lactuca sativa HOM05D000378 ORTHO05D005598 8.5e-26 123.6 154 42.2
SHI19215 Sapria himalayana HOM05D004875 ORTHO05D005598 3.0e-23 115.2 154 40.9
SHI19216 Sapria himalayana HOM05D004875 ORTHO05D005598 5.7e-22 110.9 76 65.8
PSO170G3032 Papaver somniferum HOM05D004875 ORTHO05D005598 1.8e-20 105.9 134 44.8
BolC8t47222H Brassica oleracea HOM05D004875 ORTHO05D005598 3.2e-17 95.1 54 87.0
SMO117G0137 Selaginella moellendorffii HOM05D004875 ORTHO05D005598 3.6e-16 91.7 89 50.6
BcaB03g16392 Brassica carinata HOM05D004875 ORTHO05D005598 1.7e-13 82.8 167 30.5
PSO170G5101 Papaver somniferum HOM05D004875 ORTHO05D005598 2.8e-13 82.0 442 21.7
Oeu042861.1 Olea europaea HOM05D004875 ORTHO05D005598 4.8e-13 81.3 46 78.3
SEGI_36322 Sequoiadendron giganteum HOM05D004875 ORTHO05D005598 7.0e-12 77.4 49 69.4
SHI19218 Sapria himalayana HOM05D004875 ORTHO05D005598 1.2e-11 76.6 51 64.7
PGSC0003DMG400004010 Solanum tuberosum HOM05D004875 ORTHO05D005598 7.7e-11 73.9 70 55.7
PSO782G3231 Papaver somniferum HOM05D023650 ORTHO05D026023 3.6e-08 65.1 62 46.8
BcaB06g26910 Brassica carinata HOM05D000375 ORTHO05D000240 1.4e-07 63.2 98 37.8
Psat7g253400 Pisum sativum HOM05D002927 ORTHO05D003841 3.0e-07 62.0 278 24.5
A02p23570 Brassica napus HOM05D002927 ORTHO05D003841 8.8e-07 60.5 261 23.8
BraA02t07350Z Brassica rapa HOM05D002927 ORTHO05D003841 8.8e-07 60.5 261 23.8
TPR.G24164 Trifolium pratense HOM05D002927 ORTHO05D003841 8.8e-07 60.5 278 25.9
BolC2t09744H Brassica oleracea HOM05D002927 ORTHO05D003841 1.5e-06 59.7 261 23.8
BcaB05g25270 Brassica carinata HOM05D002927 ORTHO05D003841 4.4e-06 58.2 261 23.4
BcaC03g15969 Brassica carinata HOM05D002927 ORTHO05D003841 4.4e-06 58.2 261 23.4
C02p37340 Brassica napus HOM05D002927 ORTHO05D003841 4.4e-06 58.2 261 23.4
C06p54110 Brassica napus HOM05D002927 ORTHO05D003841 7.5e-06 57.4 261 23.4
BolC6t40424H Brassica oleracea HOM05D002927 ORTHO05D003841 7.5e-06 57.4 261 23.4


User provided reference genes

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