Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.006G015600 Phaseolus vulgaris HOM05D009394 ORTHO05D002431 3.8e-48 194.9 127 100.0
Glyma.07G232600 Glycine max HOM05D009394 ORTHO05D002431 4.8e-27 124.8 127 70.9
Lalb_Chr18g0049791 Lupinus albus HOM05D009394 ORTHO05D002431 7.9e-22 107.5 69 76.8
Lj6g0020665 Lotus japonicus HOM05D009394 ORTHO05D002431 6.7e-21 104.4 69 76.8
Psat5g191400 Pisum sativum HOM05D009394 ORTHO05D002431 1.3e-19 100.1 125 48.8
arahy.Tifrunner.gnm1.ann1.48WV5B Arachis hypogaea HOM05D033084 ORTHO05D002431 1.0e-16 90.5 59 72.9
arahy.Tifrunner.gnm1.ann1.7K9SF4 Arachis hypogaea HOM05D033084 ORTHO05D002431 1.1e-15 87.0 59 71.2
Glyma.15G055400 Glycine max HOM05D009394 ORTHO05D002431 1.4e-15 86.7 71 60.6
Medtr3g436750 Medicago truncatula HOM05D009394 ORTHO05D002431 2.1e-14 82.8 68 67.6
Psat2g020800 Pisum sativum HOM05D009394 ORTHO05D002431 1.0e-13 80.5 69 65.2
TPR.G24378 Trifolium pratense HOM05D012161 ORTHO05D002431 3.0e-13 79.0 71 60.6
Lalb_Chr04g0249281 Lupinus albus HOM05D009394 ORTHO05D002431 3.9e-13 78.6 125 40.8
CANSAT54G1823 Cannabis sativa HOM05D002917 ORTHO05D002431 5.1e-13 78.2 69 60.9
Medtr5g089290 Medicago truncatula HOM05D009394 ORTHO05D002431 5.1e-13 78.2 67 62.7
TPR.G16410 Trifolium pratense HOM05D009394 ORTHO05D002431 1.1e-12 77.0 72 62.5
Haze_23253 Corylus avellana HOM05D002917 ORTHO05D002431 1.9e-12 76.3 61 62.3
Lalb_Chr10g0106201 Lupinus albus HOM05D009394 ORTHO05D002431 1.9e-12 76.3 67 61.2
CiPaw.13G149300 Carya illinoinensis HOM05D002917 ORTHO05D002431 4.3e-12 75.1 59 61.0
Prupe.4G264200 Prunus persica HOM05D002917 ORTHO05D002431 4.3e-12 75.1 71 54.9
LjContig00564g0021896 Lotus japonicus HOM05D009394 ORTHO05D002431 5.7e-12 74.7 62 62.9
arahy.Tifrunner.gnm1.ann1.NQ28YP Arachis hypogaea HOM05D009394 ORTHO05D002431 1.3e-11 73.6 69 60.9
Phvul.008G202100 Phaseolus vulgaris HOM05D009394 ORTHO05D002431 1.7e-11 73.2 73 50.7
Glyma.02G278700 Glycine max HOM05D009394 ORTHO05D002431 2.2e-11 72.8 73 50.7
RcHm_v2.0_Chr5g0050361 Rosa chinensis HOM05D012161 ORTHO05D002431 3.7e-11 72.0 73 50.7
Phvul.006G204500 Phaseolus vulgaris HOM05D009394 ORTHO05D002431 4.8e-11 71.6 69 56.5
GSVIVG01037326001 Vitis vinifera HOM05D002917 ORTHO05D002431 4.8e-11 71.6 61 62.3
Nn7g36760 Nelumbo nucifera HOM05D002917 ORTHO05D002431 8.2e-11 70.9 58 63.8
arahy.Tifrunner.gnm1.ann1.S8RCCH Arachis hypogaea HOM05D009394 ORTHO05D002431 1.1e-10 70.5 68 58.8
CsaV3_6G038900 Cucumis sativus L. HOM05D009394 ORTHO05D002431 4.1e-10 68.6 65 50.8
FvH4_3g27760 Fragaria vesca HOM05D012161 ORTHO05D002431 5.3e-10 68.2 54 59.3
FAN11G3775 Fragaria x ananassa HOM05D012161 ORTHO05D002431 6.9e-10 67.8 59 55.9
CSS0010926 Camellia sinensis var. sinensis HOM05D002917 ORTHO05D002431 1.2e-09 67.0 57 61.4
CSS0017424 Camellia sinensis var. sinensis HOM05D002917 ORTHO05D002431 1.5e-09 66.6 63 60.3
CSS0039673 Camellia sinensis var. sinensis HOM05D002917 ORTHO05D002431 1.5e-09 66.6 63 60.3
Dinv15024 Davidia involucrata HOM05D002917 ORTHO05D002431 1.5e-09 66.6 61 60.7
FAN21G0185 Fragaria x ananassa HOM05D002917 ORTHO05D002431 1.5e-09 66.6 62 53.2
Eucgr.J00684 Eucalyptus grandis HOM05D002917 ORTHO05D002431 2.0e-09 66.2 68 50.0
Atru.chr3.2999 Acer truncatum HOM05D002917 ORTHO05D002431 4.5e-09 65.1 63 55.6
Thecc.09G247400 Theobroma cacao HOM05D002917 ORTHO05D002431 5.9e-09 64.7 55 63.6
Aqoxy1G00393 Aquilegia oxysepala HOM05D002917 ORTHO05D002431 7.7e-09 64.3 67 50.7
Ciclev10018107m.g Citrus clementina HOM05D002917 ORTHO05D002431 1.0e-08 63.9 125 36.0
Potri.001G273300 Populus trichocarpa HOM05D002917 ORTHO05D002431 1.0e-08 63.9 66 53.0
MD03G1164700 Malus domestica HOM05D012161 ORTHO05D002431 1.3e-08 63.5 61 54.1
PGR119G1093 Punica granatum HOM05D002917 ORTHO05D002431 2.2e-08 62.8 66 56.1
Sabra16G0168400 Salix brachista HOM05D002917 ORTHO05D002431 2.2e-08 62.8 55 58.2
QL01p016834 Quercus lobata HOM05D012161 ORTHO05D002431 2.9e-08 62.4 57 56.1
Duzib170G0372 Durio zibethinus HOM05D006044 ORTHO05D007653 3.8e-08 62.0 56 60.7
HPP92_001700 Vanilla planifolia HOM05D002917 ORTHO05D002431 3.8e-08 62.0 54 59.3
MBI19_g20793_MAGBIO Magnolia biondii HOM05D002917 ORTHO05D002431 5.0e-08 61.6 52 61.5
Sabra09G0050600 Salix brachista HOM05D002917 ORTHO05D002431 5.0e-08 61.6 63 57.1
Cpa.g.sc34.178 Carica papaya HOM05D009394 ORTHO05D002431 6.5e-08 61.2 53 58.5
Rhsim13G0207800 Rhododendron simsii HOM05D002917 ORTHO05D002431 1.1e-07 60.5 59 55.9
Manes.02G136400 Manihot esculenta HOM05D002917 ORTHO05D002431 1.4e-07 60.1 61 59.0
Potri.009G067600 Populus trichocarpa HOM05D002917 ORTHO05D002431 1.4e-07 60.1 55 58.2
THA.LOC104799140 Tarenaya hassleriana HOM05D012161 ORTHO05D002431 5.5e-07 58.2 69 47.8
arahy.Tifrunner.gnm1.ann1.7C7ZTY Arachis hypogaea HOM05D033084 ORTHO05D002431 7.2e-07 57.8 35 77.1
Gohir.A09G110600 Gossypium hirsutum HOM05D009394 ORTHO05D002431 7.2e-07 57.8 49 59.2
Gohir.D09G107100 Gossypium hirsutum HOM05D009394 ORTHO05D002431 7.2e-07 57.8 49 59.2
Gorai.006G124700 Gossypium raimondii HOM05D009394 ORTHO05D002431 7.2e-07 57.8 49 59.2
Nitab4.5_0004840g0020 Nicotiana tabacum HOM05D002917 ORTHO05D002431 7.2e-07 57.8 71 47.9
Oeu032569.1 Olea europaea HOM05D002917 ORTHO05D002431 7.2e-07 57.8 52 55.8
Gorai.004G015000 Gossypium raimondii HOM05D009394 ORTHO05D002431 1.6e-06 56.6 51 58.8
Peaxi162Scf00359g00124 Petunia axillaris HOM05D002917 ORTHO05D002431 2.7e-06 55.8 73 46.6
BcaC01g02719 Brassica carinata HOM05D002917 ORTHO05D002431 4.7e-06 55.1 64 46.9
C03p61320 Brassica napus HOM05D002917 ORTHO05D002431 4.7e-06 55.1 66 45.5
BolC3t18392H Brassica oleracea HOM05D002917 ORTHO05D002431 4.7e-06 55.1 66 45.5
FvH4_1g22590 Fragaria vesca HOM05D002917 ORTHO05D002431 4.7e-06 55.1 63 49.2
FAN19G2300 Fragaria x ananassa HOM05D002917 ORTHO05D002431 4.7e-06 55.1 63 49.2
FAN26G2985 Fragaria x ananassa HOM05D002917 ORTHO05D002431 4.7e-06 55.1 63 49.2
FAN28G1232 Fragaria x ananassa HOM05D002917 ORTHO05D002431 4.7e-06 55.1 63 49.2
RcHm_v2.0_Chr2g0116611 Rosa chinensis HOM05D002917 ORTHO05D002431 4.7e-06 55.1 63 49.2
AL6G30970 Arabidopsis lyrata HOM05D002917 ORTHO05D002431 6.1e-06 54.7 71 47.9
AT5G19473 Arabidopsis thaliana HOM05D002917 ORTHO05D002431 6.1e-06 54.7 72 43.1
arahy.Tifrunner.gnm1.ann1.9R5XSH Arachis hypogaea HOM05D002917 ORTHO05D002431 6.1e-06 54.7 73 47.9
Migut.H02440 Erythranthe guttata HOM05D002917 ORTHO05D002431 6.1e-06 54.7 68 45.6
Thhalv10005264m.g Eutrema salsugineum HOM05D002917 ORTHO05D002431 6.1e-06 54.7 66 47.0
Sc09g0001070 Simmondsia chinensis HOM05D009394 ORTHO05D002431 6.1e-06 54.7 68 50.0
SGA_v2.0_scaffold310G48220 Striga asiatica HOM05D014772 ORTHO05D019381 7.9e-06 54.3 58 51.7


User provided reference genes

Program Settings