Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.005G179400 Phaseolus vulgaris HOM05D000319 ORTHO05D005616 1.4e-147 526.2 252 100.0
Ca_01047_v3 Cicer arietinum L. HOM05D000319 ORTHO05D005616 1.9e-136 489.2 252 92.9
Glyma.15G006400 Glycine max HOM05D000319 ORTHO05D005616 2.5e-136 488.8 252 92.5
Glyma.13G367000 Glycine max HOM05D000319 ORTHO05D005616 3.3e-136 488.4 252 92.1
Lalb_Chr22g0350801 Lupinus albus HOM05D000319 ORTHO05D005616 2.6e-133 478.8 252 90.1
TPR.G37240 Trifolium pratense HOM05D000319 ORTHO05D005616 2.6e-133 478.8 252 89.7
Medtr2g104110 Medicago truncatula HOM05D000319 ORTHO05D005616 1.1e-131 473.4 252 88.9
VMungo1080G0987 Vigna mungo HOM05D000319 ORTHO05D005616 1.9e-131 472.6 237 95.4
CANSAT56G1819 Cannabis sativa HOM05D000319 ORTHO05D005616 1.2e-130 469.9 252 87.7
arahy.Tifrunner.gnm1.ann1.69SMRU Arachis hypogaea HOM05D000319 ORTHO05D005616 1.6e-130 469.5 252 88.9
Prupe.3G092100 Prunus persica HOM05D000319 ORTHO05D005616 2.7e-130 468.8 252 87.7
Lj3g0018932 Lotus japonicus HOM05D000319 ORTHO05D005616 1.3e-129 466.5 253 88.5
MD17G1215900 Malus domestica HOM05D000319 ORTHO05D005616 2.3e-129 465.7 252 86.9
MD17G1216000 Malus domestica HOM05D000319 ORTHO05D005616 3.0e-129 465.3 252 86.9
ClCG07G012250 Citrullus lanatus HOM05D000319 ORTHO05D005616 3.9e-129 464.9 252 86.9
TWI18G1113 Tripterygium wilfordii HOM05D000319 ORTHO05D005616 8.6e-129 463.8 255 86.3
GSVIVG01000718001 Vitis vinifera HOM05D000319 ORTHO05D005616 7.3e-128 460.7 255 86.3
Sed0023498 Sechium edule HOM05D000319 ORTHO05D005616 9.5e-128 460.3 252 86.1
Cfa008743 Carpinus fangiana HOM05D000319 ORTHO05D005616 2.1e-127 459.1 254 86.6
Haze_11759 Corylus avellana HOM05D000319 ORTHO05D005616 2.1e-127 459.1 254 86.6
MELO3C017843.2 Cucumis melo HOM05D000319 ORTHO05D005616 2.8e-127 458.8 252 86.1
CiPaw.06G060900 Carya illinoinensis HOM05D000319 ORTHO05D005616 6.2e-127 457.6 254 86.2
BcaB01g02475 Brassica carinata HOM05D000319 ORTHO05D005616 2.3e-126 455.7 256 85.9
Carub.0006s3456 Capsella rubella HOM05D000319 ORTHO05D005616 2.3e-126 455.7 256 85.5
AL6G50470 Arabidopsis lyrata HOM05D000319 ORTHO05D005616 3.1e-126 455.3 256 85.5
CSS0020063 Camellia sinensis var. sinensis HOM05D000319 ORTHO05D005616 4.0e-126 454.9 255 85.1
RcHm_v2.0_Chr2g0134501 Rosa chinensis HOM05D000319 ORTHO05D005616 4.0e-126 454.9 254 85.8
TWI75G0800 Tripterygium wilfordii HOM05D000319 ORTHO05D005616 4.0e-126 454.9 255 85.1
CiPaw.05G169400 Carya illinoinensis HOM05D000319 ORTHO05D005616 5.2e-126 454.5 254 86.6
Psat5g303080 Pisum sativum HOM05D000319 ORTHO05D005616 5.2e-126 454.5 252 85.7
Sp6g02490 Schrenkiella parvula HOM05D000319 ORTHO05D005616 5.2e-126 454.5 256 85.2
Thhalv10028900m.g Eutrema salsugineum HOM05D000319 ORTHO05D005616 6.8e-126 454.1 256 85.5
Cpa.g.sc52.96 Carica papaya HOM05D000319 ORTHO05D005616 8.9e-126 453.8 255 85.1
THA.LOC104801256 Tarenaya hassleriana HOM05D000319 ORTHO05D005616 8.9e-126 453.8 257 84.8
THA.LOC104825981 Tarenaya hassleriana HOM05D000319 ORTHO05D005616 8.9e-126 453.8 256 85.2
CsaV3_4G001900 Cucumis sativus L. HOM05D000319 ORTHO05D005616 1.2e-125 453.4 252 84.9
BcaB01g02030 Brassica carinata HOM05D000319 ORTHO05D005616 1.5e-125 453.0 253 86.2
MSTRG.18283 Avicennia marina HOM05D000319 ORTHO05D005616 2.0e-125 452.6 255 85.5
PGR044G1796 Punica granatum HOM05D000319 ORTHO05D005616 2.0e-125 452.6 256 84.8
SalBow4G3161 Salvia bowleyana HOM05D000319 ORTHO05D005616 2.6e-125 452.2 254 85.4
Ah.11g049990 Amaranthus hybridus HOM05D000319 ORTHO05D005616 3.4e-125 451.8 255 84.7
FvH4_6g29310 Fragaria vesca HOM05D000319 ORTHO05D005616 3.4e-125 451.8 254 85.8
BcaC04g23998 Brassica carinata HOM05D000319 ORTHO05D000903 4.4e-125 451.4 253 85.8
C09p02100 Brassica napus HOM05D000319 ORTHO05D000903 4.4e-125 451.4 253 85.8
Manes.01G201800 Manihot esculenta HOM05D000319 ORTHO05D005616 4.4e-125 451.4 255 84.7
Manes.14G005900 Manihot esculenta HOM05D000319 ORTHO05D005616 4.4e-125 451.4 255 84.7
BolC9t53140H Brassica oleracea HOM05D000319 ORTHO05D005616 5.8e-125 451.1 256 85.2
Duzib211G0655 Durio zibethinus HOM05D000319 ORTHO05D005616 5.8e-125 451.1 255 84.3
CARHR250870 Cardamine hirsuta HOM05D000319 ORTHO05D005616 7.5e-125 450.7 256 84.8
Cc01_g18870 Coffea canephora HOM05D000319 ORTHO05D005616 7.5e-125 450.7 255 84.3
Potri.002G045200 Populus trichocarpa HOM05D000319 ORTHO05D005616 7.5e-125 450.7 255 84.3
Aa31LG5G2210 Aethionema arabicum HOM05D000319 ORTHO05D005616 9.9e-125 450.3 256 85.2
Eucgr.K03315 Eucalyptus grandis HOM05D000319 ORTHO05D005616 1.7e-124 449.5 255 84.7
Hma1.2p1_0760F.1_g214240 Hydrangea macrophylla HOM05D000319 ORTHO05D005616 1.7e-124 449.5 256 84.0
AT4G02580 Arabidopsis thaliana HOM05D000319 ORTHO05D005616 2.2e-124 449.1 256 84.4
Lsat_1_v5_gn_9_8201 Lactuca sativa HOM05D000319 ORTHO05D005616 2.2e-124 449.1 255 83.1
Potri.005G218000 Populus trichocarpa HOM05D000319 ORTHO05D005616 2.2e-124 449.1 255 84.7
Sc17g0001020 Simmondsia chinensis HOM05D000319 ORTHO05D005616 2.2e-124 449.1 255 85.1
A09p02000 Brassica napus HOM05D000319 ORTHO05D000903 2.9e-124 448.7 253 85.4
Dinv34565 Davidia involucrata HOM05D000319 ORTHO05D005616 2.9e-124 448.7 255 83.9
BolC3t16066H Brassica oleracea HOM05D000319 ORTHO05D005616 3.7e-124 448.4 252 85.7
Rhsim13G0030900 Rhododendron simsii HOM05D000319 ORTHO05D005616 4.9e-124 448.0 255 84.3
Thecc.01G267900 Theobroma cacao HOM05D000319 ORTHO05D005616 4.9e-124 448.0 255 83.9
Atru.chr5.1559 Acer truncatum HOM05D000319 ORTHO05D005616 6.4e-124 447.6 255 83.9
Nn1g02549 Nelumbo nucifera HOM05D000319 ORTHO05D005616 8.3e-124 447.2 253 85.0
A03p30990 Brassica napus HOM05D000319 ORTHO05D000903 1.1e-123 446.8 253 85.4
Ciclev10021811m.g Citrus clementina HOM05D000319 ORTHO05D005616 1.1e-123 446.8 255 84.3
COL.COLO4_06081 Corchorus olitorius HOM05D000319 ORTHO05D005616 1.1e-123 446.8 255 83.5
Gohir.A08G045400 Gossypium hirsutum HOM05D000319 ORTHO05D005616 1.4e-123 446.4 255 83.5
Gohir.D08G055800 Gossypium hirsutum HOM05D000319 ORTHO05D005616 1.4e-123 446.4 255 83.5
Duzib138G1611 Durio zibethinus HOM05D000319 ORTHO05D005616 1.9e-123 446.0 255 83.9
HanXRQChr15g0467021 Helianthus annuus HOM05D000319 ORTHO05D005616 1.9e-123 446.0 255 82.7
Gorai.004G056700 Gossypium raimondii HOM05D000319 ORTHO05D005616 2.4e-123 445.7 255 83.1
ECA247G3951 Erigeron canadensis HOM05D000319 ORTHO05D005616 7.1e-123 444.1 256 82.0
BcaC01g06747 Brassica carinata HOM05D000319 ORTHO05D000903 1.2e-122 443.4 249 85.5
C03p37760 Brassica napus HOM05D000319 ORTHO05D005616 1.2e-122 443.4 249 85.5
Lj2A1160T39 Lonicera japonica HOM05D000319 ORTHO05D005616 1.2e-122 443.4 255 83.5
BraA09t35850Z Brassica rapa HOM05D000319 ORTHO05D000903 2.1e-122 442.6 253 84.6
FAN14G4091 Fragaria x ananassa HOM05D000319 ORTHO05D005616 2.1e-122 442.6 261 83.1
BraA03t12276Z Brassica rapa HOM05D000319 ORTHO05D000903 2.7e-122 442.2 253 84.6
CAN.G1072.4 Capsicum annuum HOM05D000319 ORTHO05D005616 2.7e-122 442.2 254 83.1
Nitab4.5_0003053g0020 Nicotiana tabacum HOM05D000319 ORTHO05D005616 3.5e-122 441.8 254 82.7
Actinidia19981 Actinidia chinensis HOM05D000319 ORTHO05D005616 4.6e-122 441.4 255 82.4
EL10Ac5g10471 Beta vulgaris HOM05D000319 ORTHO05D005616 4.6e-122 441.4 255 82.7
Nitab4.5_0000187g0170 Nicotiana tabacum HOM05D000319 ORTHO05D005616 1.7e-121 439.5 254 81.9
PSO832G0193 Papaver somniferum HOM05D000319 ORTHO05D005616 1.7e-121 439.5 256 82.0
PSO210G0711 Papaver somniferum HOM05D000319 ORTHO05D005616 6.6e-121 437.6 256 81.6
Migut.D00371 Erythranthe guttata HOM05D000319 ORTHO05D005616 8.6e-121 437.2 255 81.2
Sopen09g027620 Solanum pennellii HOM05D000319 ORTHO05D005616 8.6e-121 437.2 253 82.6
CDE06G1797 Ceratophyllum demersum HOM05D000319 ORTHO05D005616 1.1e-120 436.8 257 80.5
SGA_v2.0_scaffold1G00552 Striga asiatica HOM05D000319 ORTHO05D005616 1.1e-120 436.8 255 82.0
Actinidia09093 Actinidia chinensis HOM05D000319 ORTHO05D005616 3.3e-120 435.3 255 81.2
TAR365G0186 Trochodendron aralioides HOM05D000319 ORTHO05D005616 7.3e-120 434.1 253 83.0
PGSC0003DMG400019303 Solanum tuberosum HOM05D000319 ORTHO05D005616 9.5e-120 433.7 253 81.4
AUR62032260 Chenopodium quinoa HOM05D000319 ORTHO05D005616 1.2e-119 433.3 255 81.6
DCAR_018446 Daucus carota HOM05D000319 ORTHO05D005616 1.2e-119 433.3 255 81.6
unitig_26.g10148 Utricularia gibba HOM05D000319 ORTHO05D005616 6.2e-119 431.0 255 81.6
AUR62011945 Chenopodium quinoa HOM05D000319 ORTHO05D005616 1.1e-118 430.3 255 81.2
Sed0021269 Sechium edule HOM05D000319 ORTHO05D005616 1.8e-118 429.5 252 81.3
Hund09567 Selenicereus undatus HOM05D000319 ORTHO05D005616 1.8e-118 429.5 255 80.8
Nn3g19503 Nelumbo nucifera HOM05D000319 ORTHO05D005616 2.4e-118 429.1 254 80.7
CDE07G0560 Ceratophyllum demersum HOM05D000319 ORTHO05D005616 4.0e-118 428.3 257 78.6
Gorai.001G242600 Gossypium raimondii HOM05D000319 ORTHO05D005616 5.2e-118 427.9 255 80.8
Aqoxy5G00356 Aquilegia oxysepala HOM05D000319 ORTHO05D005616 1.5e-117 426.4 253 80.6
Sabra02G0036300 Salix brachista HOM05D000319 ORTHO05D005616 1.5e-117 426.4 306 70.6
Gohir.A07G208700 Gossypium hirsutum HOM05D000319 ORTHO05D005616 3.4e-117 425.2 255 80.4
ATR0665G648 Amborella trichopoda HOM05D000319 ORTHO05D005616 1.4e-115 419.9 261 77.0
Gohir.D07G214600 Gossypium hirsutum HOM05D000319 ORTHO05D005616 2.4e-115 419.1 255 79.2
FAN09G4049 Fragaria x ananassa HOM05D000319 ORTHO05D005616 3.2e-115 418.7 239 85.4
Os05g0509200 Oryza sativa ssp. japonica HOM05D000319 ORTHO05D005616 6.0e-114 414.5 260 75.4
vmacro02626 Vaccinium macrocarpon HOM05D000319 ORTHO05D005616 6.0e-114 414.5 283 72.8
Zm00001eb292370 Zea mays HOM05D000319 ORTHO05D005616 1.1e-110 403.7 232 80.2
arahy.Tifrunner.gnm1.ann1.0F4L5T Arachis hypogaea HOM05D000319 ORTHO05D005616 5.3e-110 401.4 252 79.4
SGA_v2.0_scaffold138G35283 Striga asiatica HOM05D000319 ORTHO05D005616 6.4e-108 394.4 294 68.7
SMO361G0598 Selaginella moellendorffii HOM05D000319 ORTHO05D005616 2.4e-107 392.5 230 79.1
HanXRQChr01g0006871 Helianthus annuus HOM05D000319 ORTHO05D005616 2.7e-106 389.0 267 71.9
MBI11_g38515_MAGBIO Magnolia biondii HOM05D000319 ORTHO05D005616 4.6e-106 388.3 260 75.0
Mapoly0103s0061 Marchantia polymorpha HOM05D000319 ORTHO05D005616 4.6e-106 388.3 249 72.3
AagrBONN_evm.TU.Sc2ySwM_368.222 Anthoceros agrestis HOM05D000319 ORTHO05D005616 3.3e-104 382.1 227 78.0
Dinv22483 Davidia involucrata HOM05D000319 ORTHO05D005616 8.1e-103 377.5 219 82.6
Pp3c14_11220 Physcomitrium patens HOM05D000319 ORTHO05D005616 2.4e-102 375.9 233 74.7
Pp3c2_9810 Physcomitrium patens HOM05D000319 ORTHO05D005616 6.4e-100 367.9 232 74.6
Pp3c2_9813 Physcomitrium patens HOM05D000319 ORTHO05D005616 6.4e-100 367.9 232 74.6
CBR_g10938 Chara braunii HOM05D000319 ORTHO05D005616 3.5e-98 362.1 257 67.7
HPP92_010274 Vanilla planifolia HOM05D000319 ORTHO05D005616 4.6e-98 361.7 232 75.4
CBR_g36360 Chara braunii HOM05D000319 ORTHO05D005616 1.8e-97 359.8 257 67.3
Sabra05G0167100 Salix brachista HOM05D000319 ORTHO05D005616 1.1e-96 357.1 319 59.9
SEGI_22234 Sequoiadendron giganteum HOM05D000319 ORTHO05D005616 3.7e-95 352.1 200 82.0
FAN02G2104 Fragaria x ananassa HOM05D000319 ORTHO05D005616 8.1e-95 350.9 239 74.9
HPP92_010249 Vanilla planifolia HOM05D000319 ORTHO05D005616 1.8e-94 349.7 232 73.3
Duzib133G0192 Durio zibethinus HOM05D000319 ORTHO05D005616 4.5e-93 345.1 255 67.8
BolC2t09938H Brassica oleracea HOM05D000319 ORTHO05D005616 1.9e-88 329.7 250 68.4
Lalb_Chr24g0395411 Lupinus albus HOM05D000319 ORTHO05D005616 3.9e-81 305.4 168 88.7
Solyc09g065830.4 Solanum lycopersicum HOM05D000319 ORTHO05D005616 5.1e-81 305.1 162 87.0
PRCOL_00000415 Prasinoderma coloniale HOM05D000319 ORTHO05D005616 2.5e-80 302.8 252 58.7
QL03p046056 Quercus lobata HOM05D000319 ORTHO05D005616 9.7e-80 300.8 160 86.9
BcaB05g23646 Brassica carinata HOM05D000319 ORTHO05D005616 2.2e-79 299.7 282 59.2
Oeu058799.1 Olea europaea HOM05D000319 ORTHO05D005616 4.8e-79 298.5 161 87.0
BcaC03g16149 Brassica carinata HOM05D000319 ORTHO05D005616 6.3e-79 298.1 201 74.1
HPP92_010181 Vanilla planifolia HOM05D000319 ORTHO05D005616 4.8e-71 271.9 175 76.0
SGA_v2.0_scaffold580G53039 Striga asiatica HOM05D000319 ORTHO05D005616 4.5e-69 265.4 162 79.6
Cre10.g450400 Chlamydomonas reinhardtii HOM05D000319 ORTHO05D005616 5.9e-69 265.0 234 51.3
FAN05G4646 Fragaria x ananassa HOM05D000319 ORTHO05D005616 1.2e-66 257.3 267 54.3
C02p39270 Brassica napus HOM05D000319 ORTHO05D021913 1.7e-60 236.9 135 83.7
CAN.G2529.1 Capsicum annuum HOM05D000319 ORTHO05D005616 1.7e-55 220.3 121 88.4
Cfa025181 Carpinus fangiana HOM05D000319 ORTHO05D005616 8.2e-55 218.0 195 51.8
Carub.0006s0058 Capsella rubella HOM05D000319 ORTHO05D005616 3.8e-52 209.1 116 86.2
Peaxi162Scf00049g02221 Petunia axillaris HOM05D000319 ORTHO05D005616 9.7e-48 194.5 105 88.6
Lj1A57T50 Lonicera japonica HOM05D000319 ORTHO05D005616 4.5e-45 185.7 121 74.4
CSS0010087 Camellia sinensis var. sinensis HOM05D000319 ORTHO05D005616 7.2e-43 178.3 100 84.0
Oeu002275.1 Olea europaea HOM05D000319 ORTHO05D005616 1.6e-42 177.2 165 57.6
Haze_26296 Corylus avellana HOM05D000319 ORTHO05D005616 3.6e-42 176.0 211 45.5
Psat5g267520 Pisum sativum HOM05D000319 ORTHO05D005616 1.4e-41 174.1 83 94.0
Lalb_Chr24g0395401 Lupinus albus HOM05D000319 ORTHO05D005616 7.5e-40 168.3 84 88.1
Oeu058801.1 Olea europaea HOM05D000113 ORTHO05D010194 2.3e-36 156.8 100 78.0
Gohir.D03G127200 Gossypium hirsutum HOM05D000319 ORTHO05D005616 2.5e-35 153.3 89 82.0
Gorai.007G009700 Gossypium raimondii HOM05D000319 ORTHO05D005616 4.2e-35 152.5 83 85.5
Gorai.004G109900 Gossypium raimondii HOM05D000319 ORTHO05D005616 4.0e-33 146.0 89 78.7
Gohir.D08G101900 Gossypium hirsutum HOM05D000319 ORTHO05D005616 5.2e-33 145.6 89 78.7
QL03p046047 Quercus lobata HOM05D000319 ORTHO05D005616 3.4e-32 142.9 97 76.3
Gohir.D11G034350 Gossypium hirsutum HOM05D000319 ORTHO05D015684 4.4e-32 142.5 77 85.7
Gorai.011G177500 Gossypium raimondii HOM05D000319 ORTHO05D015684 1.7e-31 140.6 89 76.4
Gorai.007G037200 Gossypium raimondii HOM05D000319 ORTHO05D015684 9.2e-30 134.8 81 80.2
Gohir.D02G148240 Gossypium hirsutum HOM05D000319 ORTHO05D015684 1.6e-29 134.0 81 80.2
Gorai.008G258400 Gossypium raimondii HOM05D000319 ORTHO05D015684 1.0e-28 131.3 81 79.0
Gohir.A10G159900 Gossypium hirsutum HOM05D000319 ORTHO05D015684 2.3e-28 130.2 74 82.4
Gohir.A12G213400 Gossypium hirsutum HOM05D000319 ORTHO05D015684 2.3e-28 130.2 74 82.4
Gohir.D05G290500 Gossypium hirsutum HOM05D000319 ORTHO05D015684 2.3e-28 130.2 74 82.4
Gohir.D12G241200 Gossypium hirsutum HOM05D000319 ORTHO05D015684 2.3e-28 130.2 74 82.4
Gohir.A02G064600 Gossypium hirsutum HOM05D000319 ORTHO05D015684 2.9e-28 129.8 74 82.4
Psat2g121280 Pisum sativum HOM05D000319 ORTHO05D005616 4.3e-27 125.9 84 73.8
Gorai.005G095000 Gossypium raimondii HOM05D000319 ORTHO05D015684 2.8e-26 123.2 74 78.4
Gorai.003G111100 Gossypium raimondii HOM05D000319 ORTHO05D015684 2.3e-25 120.2 75 78.7
Gohir.D03G105033 Gossypium hirsutum HOM05D000319 ORTHO05D005616 4.0e-25 119.4 71 80.3
Psat4g011320 Pisum sativum HOM05D000319 ORTHO05D005616 8.3e-23 111.7 82 68.3
Lj1A57T51 Lonicera japonica HOM05D000319 ORTHO05D005616 1.9e-11 73.9 42 83.3
GSVIVG01013142001 Vitis vinifera HOM05D000319 ORTHO05D439463 1.8e-09 67.4 55 65.5
arahy.Tifrunner.gnm1.ann1.52VWXA Arachis hypogaea HOM05D000069 ORTHO05D086405 1.9e-06 57.4 33 84.8


User provided reference genes

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