Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.005G107700 Phaseolus vulgaris HOM05D004263 ORTHO05D004931 0.0e+00 1976.8 993 100.0
Glyma.13G301100 Glycine max HOM05D004263 ORTHO05D004931 0.0e+00 1872.8 993 94.4
Glyma.12G201100 Glycine max HOM05D004263 ORTHO05D004931 0.0e+00 1819.3 993 91.8
Lj3g0003932 Lotus japonicus HOM05D004263 ORTHO05D004931 0.0e+00 1812.0 991 91.2
Psat2g144400 Pisum sativum HOM05D004263 ORTHO05D004931 0.0e+00 1797.7 993 89.6
Ca_01536_v3 Cicer arietinum L. HOM05D004263 ORTHO05D004931 0.0e+00 1786.9 990 90.1
arahy.Tifrunner.gnm1.ann1.RA2UAB Arachis hypogaea HOM05D004263 ORTHO05D004931 0.0e+00 1780.4 1015 88.2
Medtr8g063380 Medicago truncatula HOM05D004263 ORTHO05D004931 0.0e+00 1775.8 1006 88.6
arahy.Tifrunner.gnm1.ann1.0PC56D Arachis hypogaea HOM05D004263 ORTHO05D004931 0.0e+00 1745.3 1077 82.8
Lalb_Chr22g0356351 Lupinus albus HOM05D004263 ORTHO05D004931 0.0e+00 1713.0 935 91.4
TWI75G0058 Tripterygium wilfordii HOM05D004263 ORTHO05D004931 0.0e+00 1709.5 990 85.6
Manes.12G082900 Manihot esculenta HOM05D004263 ORTHO05D004931 0.0e+00 1707.6 990 85.3
CiPaw.03G169700 Carya illinoinensis HOM05D004263 ORTHO05D004931 0.0e+00 1706.4 991 85.6
QL08p037295 Quercus lobata HOM05D004263 ORTHO05D004931 0.0e+00 1701.0 991 85.6
Ciclev10014147m.g Citrus clementina HOM05D004263 ORTHO05D004931 0.0e+00 1697.9 990 84.7
COL.COLO4_13682 Corchorus olitorius HOM05D004263 ORTHO05D004931 0.0e+00 1695.2 989 85.3
Gohir.A01G015400 Gossypium hirsutum HOM05D004263 ORTHO05D004931 0.0e+00 1689.9 990 84.3
Gorai.002G017100 Gossypium raimondii HOM05D004263 ORTHO05D004931 0.0e+00 1689.1 990 84.5
Prupe.3G231000 Prunus persica HOM05D004263 ORTHO05D004931 0.0e+00 1687.5 988 84.7
FvH4_6g44560 Fragaria vesca HOM05D004263 ORTHO05D004931 0.0e+00 1685.6 988 84.7
Thecc.02G171500 Theobroma cacao HOM05D004263 ORTHO05D004931 0.0e+00 1684.8 990 84.9
Gohir.D01G015400 Gossypium hirsutum HOM05D004263 ORTHO05D004931 0.0e+00 1683.7 990 84.2
RcHm_v2.0_Chr2g0161771 Rosa chinensis HOM05D004263 ORTHO05D004931 0.0e+00 1682.5 988 84.9
PGR142G2990 Punica granatum HOM05D004263 ORTHO05D004931 0.0e+00 1681.8 991 84.8
Eucgr.K00914 Eucalyptus grandis HOM05D004263 ORTHO05D004931 0.0e+00 1680.2 990 84.3
CANSAT64G2398 Cannabis sativa HOM05D004263 ORTHO05D004931 0.0e+00 1679.8 990 83.9
GSVIVG01030005001 Vitis vinifera HOM05D004263 ORTHO05D004931 0.0e+00 1675.6 990 84.1
TAR627G0082 Trochodendron aralioides HOM05D004263 ORTHO05D004931 0.0e+00 1672.9 990 83.4
CSS0035503 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1671.8 989 83.8
Actinidia39296 Actinidia chinensis HOM05D004263 ORTHO05D004931 0.0e+00 1670.6 989 83.7
Potri.013G147600 Populus trichocarpa HOM05D004263 ORTHO05D004931 0.0e+00 1670.2 990 83.5
FAN14G1228 Fragaria x ananassa HOM05D004263 ORTHO05D004931 0.0e+00 1668.7 1012 82.5
Cfa010655 Carpinus fangiana HOM05D004263 ORTHO05D004931 0.0e+00 1667.1 990 83.2
FAN02G3638 Fragaria x ananassa HOM05D004263 ORTHO05D004931 0.0e+00 1666.0 1012 82.4
MD14G1065300 Malus domestica HOM05D004263 ORTHO05D004931 0.0e+00 1659.8 990 83.2
CSS0002238 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1658.3 999 82.8
FAN09G1275 Fragaria x ananassa HOM05D004263 ORTHO05D004931 0.0e+00 1657.1 1012 82.2
MD17G1084700 Malus domestica HOM05D004263 ORTHO05D004931 0.0e+00 1654.8 989 82.9
Cc04_g12270 Coffea canephora HOM05D004263 ORTHO05D004931 0.0e+00 1650.6 998 81.9
Hma1.2p1_0565F.1_g179560 Hydrangea macrophylla HOM05D004263 ORTHO05D004931 0.0e+00 1647.9 985 83.0
CsaV3_7G004120 Cucumis sativus L. HOM05D004263 ORTHO05D004931 0.0e+00 1644.4 991 82.3
Haze_13086 Corylus avellana HOM05D004263 ORTHO05D004931 0.0e+00 1636.7 1085 76.6
Thhalv10006686m.g Eutrema salsugineum HOM05D004263 ORTHO05D004931 0.0e+00 1635.5 990 81.1
Sed0028127 Sechium edule HOM05D004263 ORTHO05D004931 0.0e+00 1634.4 989 81.6
CARHR012770 Cardamine hirsuta HOM05D004263 ORTHO05D004931 0.0e+00 1634.0 991 81.3
Solyc06g005080.4 Solanum lycopersicum HOM05D004263 ORTHO05D004931 0.0e+00 1632.1 990 81.5
Sopen06g001070 Solanum pennellii HOM05D004263 ORTHO05D004931 0.0e+00 1630.9 990 81.4
A06p09160 Brassica napus HOM05D004263 ORTHO05D004931 0.0e+00 1629.8 992 80.8
CSS0005038 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1629.8 998 81.9
Sp1g11070 Schrenkiella parvula HOM05D004263 ORTHO05D004931 0.0e+00 1629.8 990 80.8
BolC5t29815H Brassica oleracea HOM05D004263 ORTHO05D004931 0.0e+00 1621.7 992 80.5
AL1G23830 Arabidopsis lyrata HOM05D004263 ORTHO05D004931 0.0e+00 1621.3 991 80.5
THA.LOC104809434 Tarenaya hassleriana HOM05D004263 ORTHO05D004931 0.0e+00 1619.8 986 80.6
CSS0035062 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1618.6 991 81.8
BraA06t24102Z Brassica rapa HOM05D004263 ORTHO05D004931 0.0e+00 1617.4 1002 79.6
Carub.0001s1218 Capsella rubella HOM05D004263 ORTHO05D004931 0.0e+00 1617.4 990 80.2
vmacro09293 Vaccinium macrocarpon HOM05D004263 ORTHO05D004931 0.0e+00 1615.9 1028 79.4
Peaxi162Scf00255g01022 Petunia axillaris HOM05D004263 ORTHO05D004931 0.0e+00 1614.0 993 80.7
C05p10740 Brassica napus HOM05D004263 ORTHO05D004931 0.0e+00 1613.6 995 80.2
BcaB03g13185 Brassica carinata HOM05D004263 ORTHO05D004931 0.0e+00 1613.2 990 80.6
A08p32810 Brassica napus HOM05D004263 ORTHO05D004931 0.0e+00 1610.5 1005 79.4
ECA246G4434 Erigeron canadensis HOM05D004263 ORTHO05D004931 0.0e+00 1610.5 974 82.0
PSO801G0468 Papaver somniferum HOM05D004263 ORTHO05D004931 0.0e+00 1610.1 991 80.5
Aqoxy1G01192 Aquilegia oxysepala HOM05D004263 ORTHO05D004931 0.0e+00 1607.8 975 81.3
AT1G12470 Arabidopsis thaliana HOM05D004263 ORTHO05D004931 0.0e+00 1607.4 990 79.7
Migut.O00120 Erythranthe guttata HOM05D004263 ORTHO05D004931 0.0e+00 1605.5 976 81.1
HanXRQChr07g0200651 Helianthus annuus HOM05D004263 ORTHO05D004931 0.0e+00 1604.0 978 81.5
SGA_v2.0_scaffold90G27889 Striga asiatica HOM05D004263 ORTHO05D004931 0.0e+00 1603.6 995 80.5
PSO339G5244 Papaver somniferum HOM05D004263 ORTHO05D004931 0.0e+00 1600.9 989 80.2
C08p15450 Brassica napus HOM05D004263 ORTHO05D004931 0.0e+00 1599.7 1005 79.2
Oeu001693.1 Olea europaea HOM05D004263 ORTHO05D004931 0.0e+00 1597.8 990 80.6
Sabra13G0119200 Salix brachista HOM05D004263 ORTHO05D004931 0.0e+00 1597.4 990 81.2
BraA08t35204Z Brassica rapa HOM05D004263 ORTHO05D004931 0.0e+00 1595.1 1007 78.7
Duzib248G0991 Durio zibethinus HOM05D004263 ORTHO05D004931 0.0e+00 1592.4 990 81.4
Ah.11g047230 Amaranthus hybridus HOM05D004263 ORTHO05D004931 0.0e+00 1580.8 990 79.6
DCAR_009724 Daucus carota HOM05D004263 ORTHO05D004931 0.0e+00 1579.3 979 80.9
EL10As1g23122 Beta vulgaris HOM05D004263 ORTHO05D004931 0.0e+00 1578.9 990 79.3
Aa31LG1G2150 Aethionema arabicum HOM05D004263 ORTHO05D004931 0.0e+00 1574.7 996 79.1
SalBow7G3995 Salvia bowleyana HOM05D004263 ORTHO05D004931 0.0e+00 1563.9 988 78.6
BolC8t49173H Brassica oleracea HOM05D004263 ORTHO05D004931 0.0e+00 1560.0 1040 76.1
Haze_03591 Corylus avellana HOM05D004263 ORTHO05D004931 0.0e+00 1558.9 1026 77.0
AUR62034472 Chenopodium quinoa HOM05D004263 ORTHO05D004931 0.0e+00 1558.5 988 78.7
ClCG02G001300 Citrullus lanatus HOM05D004263 ORTHO05D004931 0.0e+00 1549.6 1020 77.1
Lsat_1_v5_gn_3_39980 Lactuca sativa HOM05D004263 ORTHO05D004931 0.0e+00 1537.7 971 78.8
Nn2g15850 Nelumbo nucifera HOM05D004263 ORTHO05D004931 0.0e+00 1524.6 940 81.0
HPP92_004167 Vanilla planifolia HOM05D004263 ORTHO05D004931 0.0e+00 1517.7 982 75.9
Atru.chr6.3077 Acer truncatum HOM05D004263 ORTHO05D004931 0.0e+00 1512.3 927 81.8
AUR62041769 Chenopodium quinoa HOM05D004263 ORTHO05D004931 0.0e+00 1494.9 990 76.3
Lj8C117G6 Lonicera japonica HOM05D004263 ORTHO05D004931 0.0e+00 1471.4 975 76.5
Sc08g0004410 Simmondsia chinensis HOM05D004263 ORTHO05D004931 0.0e+00 1468.4 896 80.7
BcaC05g25186 Brassica carinata HOM05D004263 ORTHO05D004931 0.0e+00 1447.6 846 83.9
Os08g0178100 Oryza sativa ssp. japonica HOM05D004263 ORTHO05D004931 0.0e+00 1429.5 995 71.7
CDE05G0585 Ceratophyllum demersum HOM05D004263 ORTHO05D004931 0.0e+00 1398.6 997 71.1
Cfa014543 Carpinus fangiana HOM05D004263 ORTHO05D004931 0.0e+00 1367.8 785 85.6
Hma1.2p1_0565F.1_g179570 Hydrangea macrophylla HOM05D004263 ORTHO05D004931 0.0e+00 1364.0 817 83.7
Actinidia30490 Actinidia chinensis HOM05D004263 ORTHO05D004931 0.0e+00 1356.7 796 84.9
MELO3C018764.2 Cucumis melo HOM05D004263 ORTHO05D004931 0.0e+00 1330.1 792 83.2
unitig_0.g1433 Utricularia gibba HOM05D004263 ORTHO05D004931 0.0e+00 1313.9 856 77.6
MBI02_g13236_MAGBIO Magnolia biondii HOM05D004263 ORTHO05D004931 0.0e+00 1309.7 795 83.1
Medtr5g026090 Medicago truncatula HOM05D004263 ORTHO05D004931 0.0e+00 1301.2 783 85.2
Cpa.g.sc34.88 Carica papaya HOM05D004263 ORTHO05D004931 0.0e+00 1294.3 773 84.3
ATR0737G173 Amborella trichopoda HOM05D004263 ORTHO05D004931 0.0e+00 1290.0 954 69.2
CSS0039065 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1289.6 982 69.8
Rhsim04G0063000 Rhododendron simsii HOM05D004263 ORTHO05D004931 0.0e+00 1279.2 761 84.8
MSTRG.11470 Avicennia marina HOM05D004263 ORTHO05D004931 0.0e+00 1239.6 750 82.3
Mapoly0011s0120 Marchantia polymorpha HOM05D004263 ORTHO05D004931 0.0e+00 1166.8 983 60.0
Pp3c14_1240 Physcomitrium patens HOM05D004263 ORTHO05D004931 0.0e+00 1151.0 987 58.8
Lj1C736G5 Lonicera japonica HOM05D004263 ORTHO05D004931 0.0e+00 1121.7 762 75.9
QL08p037237 Quercus lobata HOM05D004263 ORTHO05D004931 2.1e-295 1019.2 643 79.8
SMO239G0082 Selaginella moellendorffii HOM05D004263 ORTHO05D004931 1.3e-292 1010.0 988 51.6
AagrBONN_evm.TU.Sc2ySwM_228.3812 Anthoceros agrestis HOM05D004263 ORTHO05D004931 3.5e-290 1001.9 790 62.4
Nitab4.5_0001514g0010 Nicotiana tabacum HOM05D004263 ORTHO05D004931 2.0e-285 986.1 611 79.1
Zm00001eb412950 Zea mays HOM05D004263 ORTHO05D004931 2.6e-285 985.7 680 74.1
Dinv23716 Davidia involucrata HOM05D004263 ORTHO05D004931 3.1e-283 978.8 559 88.6
TPR.G26159 Trifolium pratense HOM05D004263 ORTHO05D004931 8.9e-270 934.1 519 89.8
SHI10474 Sapria himalayana HOM05D004263 ORTHO05D004931 2.5e-248 862.8 611 69.1
Nitab4.5_0000025g0490 Nicotiana tabacum HOM05D004263 ORTHO05D004931 3.3e-248 862.4 574 74.6
Oeu001695.1 Olea europaea HOM05D004263 ORTHO05D004931 1.3e-241 840.5 518 82.4
VMungo1080G0385 Vigna mungo HOM05D004263 ORTHO05D004931 2.3e-233 813.1 418 95.9
Dinv23715 Davidia involucrata HOM05D004263 ORTHO05D004931 3.8e-164 583.2 336 83.0
Nitab4.5_0001514g0020 Nicotiana tabacum HOM05D004263 ORTHO05D004931 2.4e-150 537.3 338 80.8
Nitab4.5_0000025g0510 Nicotiana tabacum HOM05D004263 ORTHO05D004931 3.2e-142 510.4 282 88.7
PRCOL_00001544 Prasinoderma coloniale HOM05D004263 ORTHO05D004931 6.4e-127 459.5 1066 31.6
CAN.G224.16 Capsicum annuum HOM05D004263 ORTHO05D004931 3.8e-119 433.7 249 86.3
Cfa022578 Carpinus fangiana HOM05D004263 ORTHO05D004931 5.1e-108 396.7 1005 29.0
MSTRG.11471 Avicennia marina HOM05D004263 ORTHO05D004931 7.1e-102 376.3 230 76.1
Cre07.g328550 Chlamydomonas reinhardtii HOM05D004263 ORTHO05D004931 8.7e-100 369.4 1266 26.5
CAN.G2148.2 Capsicum annuum HOM05D004263 ORTHO05D004931 3.3e-99 367.5 268 71.3
CAN.G2148.1 Capsicum annuum HOM05D004263 ORTHO05D004931 1.3e-98 365.5 231 72.7
Lj1C736T2 Lonicera japonica HOM05D004263 ORTHO05D004931 2.4e-97 361.3 211 81.5
BcaC05g25136 Brassica carinata HOM05D004263 ORTHO05D004931 1.0e-92 345.9 207 78.3
TPR.G28496 Trifolium pratense HOM05D004086 ORTHO05D004641 1.8e-89 335.1 197 81.7
CAN.G224.18 Capsicum annuum HOM05D004263 ORTHO05D004931 1.9e-86 325.1 231 66.7
PGSC0003DMG400025399 Solanum tuberosum HOM05D004263 ORTHO05D004931 5.0e-79 300.4 178 78.7
CBR_g50947 Chara braunii HOM05D004263 ORTHO05D004931 9.7e-75 286.2 268 56.0
CBR_g40703 Chara braunii HOM05D004263 ORTHO05D004931 2.2e-71 275.0 441 38.8
CSS0037177 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 2.7e-69 268.1 208 67.8
Cpa.g.sc34.89 Carica papaya HOM05D004263 ORTHO05D004931 1.1e-65 256.1 153 76.5
Medtr8g471030 Medicago truncatula HOM05D004263 ORTHO05D004931 1.2e-61 242.7 127 88.2
Oeu001692.1 Olea europaea HOM05D004263 ORTHO05D004931 2.9e-55 221.5 152 68.4
Atru.chr5.268 Acer truncatum HOM05D004263 ORTHO05D004931 7.2e-46 190.3 130 68.5
CBR_g40701 Chara braunii HOM05D004263 ORTHO05D004931 4.1e-41 174.5 163 58.3
CSS0002414 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 7.8e-40 170.2 174 58.6
Atru.chr3.3152 Acer truncatum HOM05D004263 ORTHO05D004931 8.6e-39 166.8 123 69.1
SEGI_30776 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 3.4e-35 154.8 129 61.2
SEGI_15765 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 1.3e-34 152.9 102 72.5
SEGI_40242 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 2.9e-34 151.8 94 76.6
CAN.G224.15 Capsicum annuum HOM05D004263 ORTHO05D004931 5.0e-31 141.0 88 77.3
SEGI_16142 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 2.5e-30 138.7 73 93.2
SEGI_10945 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 3.4e-27 128.3 81 71.6
C09p48310 Brassica napus HOM05D005294 ORTHO05D006720 1.3e-26 126.3 131 58.8
BolC9t57681H Brassica oleracea HOM05D005294 ORTHO05D006720 2.9e-26 125.2 127 59.1
CAN.G2148.3 Capsicum annuum HOM05D004263 ORTHO05D004931 4.1e-25 121.3 75 77.3
CAN.G224.17 Capsicum annuum HOM05D004263 ORTHO05D004931 4.6e-24 117.9 104 61.5
SEGI_22414 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 7.8e-24 117.1 92 66.3
CAN.G666.1 Capsicum annuum HOM05D004263 ORTHO05D004931 1.0e-23 116.7 99 64.6
SEGI_06467 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 1.3e-23 116.3 91 67.0
CSS0009942 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 2.8e-21 108.6 80 77.5
MD02G1222100 Malus domestica HOM05D004263 ORTHO05D004931 1.4e-17 96.3 52 82.7
Nitab4.5_0000025g0500 Nicotiana tabacum HOM05D004263 ORTHO05D004931 3.5e-16 91.7 54 79.6
arahy.Tifrunner.gnm1.ann1.J1BTWL Arachis hypogaea HOM05D004263 ORTHO05D004931 1.7e-15 89.4 100 52.0
SEGI_34242 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 3.9e-15 88.2 107 45.8
unitig_0.g1434 Utricularia gibba HOM05D004263 ORTHO05D004931 1.1e-14 86.7 74 60.8
Manes.13G151750 Manihot esculenta HOM05D004263 ORTHO05D004931 5.2e-12 77.8 160 34.4
SEGI_32704 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 2.0e-11 75.9 47 61.7
Glyma.08G214950 Glycine max HOM05D004263 ORTHO05D004931 1.3e-10 73.2 47 80.9
MCO10G067 Micromonas commoda HOM05D004263 ORTHO05D004931 4.9e-10 71.2 226 25.2


User provided reference genes

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