Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.005G089300 Phaseolus vulgaris HOM05D004585 ORTHO05D005640 3.7e-117 424.9 210 100.0
VMungo1080G1669 Vigna mungo HOM05D004585 ORTHO05D005640 5.2e-111 404.4 210 94.8
Glyma.09G111400 Glycine max HOM05D004585 ORTHO05D005640 2.4e-100 369.0 215 85.6
Glyma.02G173000 Glycine max HOM05D004585 ORTHO05D005640 5.4e-100 367.9 213 85.9
Ca_04982_v3 Cicer arietinum L. HOM05D004585 ORTHO05D005640 1.3e-98 363.2 210 83.3
Ca_11096_v3 Cicer arietinum L. HOM05D004585 ORTHO05D005640 1.3e-98 363.2 210 83.3
Psat6g221600 Pisum sativum HOM05D004585 ORTHO05D005640 1.0e-95 353.6 211 81.5
Lalb_Chr22g0354511 Lupinus albus HOM05D004585 ORTHO05D005640 4.0e-95 351.7 211 80.1
TPR.G4853 Trifolium pratense HOM05D004585 ORTHO05D005640 5.2e-95 351.3 210 80.0
arahy.Tifrunner.gnm1.ann1.48LUDE Arachis hypogaea HOM05D004585 ORTHO05D005640 2.6e-94 349.0 217 76.5
Lj6g0005217 Lotus japonicus HOM05D004585 ORTHO05D005640 3.4e-94 348.6 209 80.4
Lalb_Chr14g0365991 Lupinus albus HOM05D004585 ORTHO05D005640 3.4e-94 348.6 211 80.6
arahy.Tifrunner.gnm1.ann1.CB8VHN Arachis hypogaea HOM05D004585 ORTHO05D005640 7.5e-94 347.4 217 76.5
Medtr1g108290 Medicago truncatula HOM05D004585 ORTHO05D005640 5.4e-92 341.3 214 79.9
Cfa011225 Carpinus fangiana HOM05D004585 ORTHO05D005640 2.3e-90 335.9 214 75.2
Haze_02611 Corylus avellana HOM05D004585 ORTHO05D005640 5.0e-90 334.7 214 75.2
Cfa013557 Carpinus fangiana HOM05D004585 ORTHO05D005640 4.3e-89 331.6 214 75.2
MELO3C019883.2 Cucumis melo HOM05D004585 ORTHO05D005640 5.6e-89 331.3 211 73.9
ClCG08G008100 Citrullus lanatus HOM05D004585 ORTHO05D005640 1.2e-88 330.1 211 73.5
Thecc.10G109700 Theobroma cacao HOM05D004585 ORTHO05D005640 1.2e-88 330.1 214 74.3
Thecc.K0008500 Theobroma cacao HOM05D004585 ORTHO05D005640 1.2e-88 330.1 214 74.3
Sed0016970 Sechium edule HOM05D004585 ORTHO05D005640 1.6e-88 329.7 211 74.9
PGR142G4346 Punica granatum HOM05D004585 ORTHO05D005640 3.6e-88 328.6 215 73.5
Sed0007729 Sechium edule HOM05D004585 ORTHO05D005640 8.0e-88 327.4 211 72.5
CsaV3_6G004080 Cucumis sativus L. HOM05D004585 ORTHO05D005640 1.0e-87 327.0 211 72.5
Prupe.1G580700 Prunus persica HOM05D004585 ORTHO05D005640 2.3e-87 325.9 218 75.2
Gorai.013G013300 Gossypium raimondii HOM05D004585 ORTHO05D005640 5.2e-87 324.7 214 74.8
Hma1.2p1_0567F.1_g180100 Hydrangea macrophylla HOM05D004585 ORTHO05D005640 5.2e-87 324.7 214 74.3
Eucgr.G02711 Eucalyptus grandis HOM05D004585 ORTHO05D005640 6.8e-87 324.3 216 70.4
THA.LOC104816458 Tarenaya hassleriana HOM05D004585 ORTHO05D005640 1.5e-86 323.2 219 72.1
Manes.05G202500 Manihot esculenta HOM05D004585 ORTHO05D005640 3.4e-86 322.0 212 72.6
TWI38G0710 Tripterygium wilfordii HOM05D004585 ORTHO05D005640 3.4e-86 322.0 213 72.8
Gohir.D13G012100 Gossypium hirsutum HOM05D004585 ORTHO05D005640 4.4e-86 321.6 214 74.3
Dinv20840 Davidia involucrata HOM05D004585 ORTHO05D005640 7.5e-86 320.9 211 74.9
Actinidia18578 Actinidia chinensis HOM05D004585 ORTHO05D005640 9.8e-86 320.5 214 72.9
CSS0035600 Camellia sinensis var. sinensis HOM05D000239 ORTHO05D000484 1.3e-85 320.1 209 73.2
Gohir.A13G011400 Gossypium hirsutum HOM05D004585 ORTHO05D005640 2.2e-85 319.3 214 73.4
CiPaw.01G204400 Carya illinoinensis HOM05D004585 ORTHO05D005640 4.9e-85 318.2 214 73.4
vmacro21510 Vaccinium macrocarpon HOM05D004585 ORTHO05D005640 1.4e-84 316.6 214 71.0
Duzib128G1105 Durio zibethinus HOM05D004585 ORTHO05D005640 4.1e-84 315.1 219 70.3
Oeu027977.1 Olea europaea HOM05D004585 ORTHO05D005640 9.2e-84 313.9 212 72.2
TAR633G1318 Trochodendron aralioides HOM05D004585 ORTHO05D005640 1.6e-83 313.2 215 70.2
Rhsim03G0106100 Rhododendron simsii HOM05D004585 ORTHO05D005640 2.7e-83 312.4 215 69.3
Sopen06g031130 Solanum pennellii HOM05D004585 ORTHO05D005640 6.0e-83 311.2 215 71.6
CANSAT56G4487 Cannabis sativa HOM05D004585 ORTHO05D005640 7.8e-83 310.8 209 71.8
GSVIVG01021851001 Vitis vinifera HOM05D004585 ORTHO05D005640 7.8e-83 310.8 214 72.9
Aa31LG3G3420 Aethionema arabicum HOM05D004585 ORTHO05D005640 3.0e-82 308.9 218 68.8
Cc02_g10240 Coffea canephora HOM05D004585 ORTHO05D005640 3.0e-82 308.9 217 70.5
Sopen11g026360 Solanum pennellii HOM05D004585 ORTHO05D005640 3.0e-82 308.9 217 71.9
Atru.chr12.969 Acer truncatum HOM05D004585 ORTHO05D005640 5.0e-82 308.1 214 69.2
Actinidia06707 Actinidia chinensis HOM05D004585 ORTHO05D005640 6.6e-82 307.8 214 69.6
Nitab4.5_0000442g0080 Nicotiana tabacum HOM05D004585 ORTHO05D005640 8.6e-82 307.4 213 72.8
TAR633G2635 Trochodendron aralioides HOM05D004585 ORTHO05D005640 8.6e-82 307.4 214 69.6
Peaxi162Scf00150g00411 Petunia axillaris HOM05D004585 ORTHO05D005640 1.1e-81 307.0 214 71.5
Hma1.2p1_0026F.1_g016750 Hydrangea macrophylla HOM05D004585 ORTHO05D005640 1.9e-81 306.2 214 72.0
THA.LOC104823192 Tarenaya hassleriana HOM05D004585 ORTHO05D005640 1.9e-81 306.2 220 67.7
Thhalv10014607m.g Eutrema salsugineum HOM05D004585 ORTHO05D005640 3.3e-81 305.4 221 66.1
PGSC0003DMG400007128 Solanum tuberosum HOM05D004585 ORTHO05D005640 3.3e-81 305.4 215 70.7
RcHm_v2.0_Chr4g0433501 Rosa chinensis HOM05D004585 ORTHO05D005640 4.3e-81 305.1 214 71.0
PGSC0003DMG400000462 Solanum tuberosum HOM05D004585 ORTHO05D005640 7.3e-81 304.3 217 70.0
Ciclev10013752m.g Citrus clementina HOM05D004585 ORTHO05D005640 1.6e-80 303.1 213 70.0
ECA238G4124 Erigeron canadensis HOM05D004585 ORTHO05D005640 1.6e-80 303.1 214 68.7
MD08G1243300 Malus domestica HOM05D004585 ORTHO05D005640 4.7e-80 301.6 188 73.9
Sp6g38180 Schrenkiella parvula HOM05D004585 ORTHO05D005640 4.7e-80 301.6 221 64.7
Nn3g20167 Nelumbo nucifera HOM05D004585 ORTHO05D005640 1.4e-79 300.1 216 67.6
BcaC06g32168 Brassica carinata HOM05D004585 ORTHO05D005640 1.8e-79 299.7 222 64.4
C09p72190 Brassica napus HOM05D004585 ORTHO05D005640 3.1e-79 298.9 222 64.4
BolC9t59963H Brassica oleracea HOM05D004585 ORTHO05D005640 3.1e-79 298.9 222 64.4
QL04p041242 Quercus lobata HOM05D004585 ORTHO05D005640 3.1e-79 298.9 214 69.6
Potri.010G234800 Populus trichocarpa HOM05D004585 ORTHO05D005640 5.2e-79 298.1 214 66.8
HanXRQChr14g0456901 Helianthus annuus HOM05D004585 ORTHO05D005640 8.9e-79 297.4 204 68.6
BraA02t04819Z Brassica rapa HOM05D004585 ORTHO05D005640 1.2e-78 297.0 218 65.1
HanXRQChr10g0319081 Helianthus annuus HOM05D004585 ORTHO05D005640 1.2e-78 297.0 186 74.7
Sabra10G0182000 Salix brachista HOM05D004585 ORTHO05D005640 2.0e-78 296.2 214 66.4
PSO675G5749 Papaver somniferum HOM05D004585 ORTHO05D005640 2.6e-78 295.8 224 66.5
A10p31500 Brassica napus HOM05D004585 ORTHO05D005640 3.4e-78 295.4 222 64.4
BraA10t45196Z Brassica rapa HOM05D004585 ORTHO05D005640 3.4e-78 295.4 222 64.4
CARHR208690 Cardamine hirsuta HOM05D004585 ORTHO05D005640 3.4e-78 295.4 221 63.8
C02p02000 Brassica napus HOM05D004585 ORTHO05D005640 7.5e-78 294.3 222 63.5
Lj3A931T47 Lonicera japonica HOM05D004585 ORTHO05D005640 7.5e-78 294.3 199 73.4
Carub.0006s0352 Capsella rubella HOM05D004585 ORTHO05D005640 9.8e-78 293.9 219 63.9
FvH4_5g27351 Fragaria vesca HOM05D004585 ORTHO05D005640 9.8e-78 293.9 223 66.4
PSO717G0039 Papaver somniferum HOM05D004585 ORTHO05D005640 1.3e-77 293.5 226 66.8
BcaC03g12939 Brassica carinata HOM05D004585 ORTHO05D005640 2.2e-77 292.7 222 63.1
Sc09g0005570 Simmondsia chinensis HOM05D004585 ORTHO05D005640 2.9e-77 292.4 206 67.5
FAN26G1691 Fragaria x ananassa HOM05D004585 ORTHO05D005640 6.4e-77 291.2 223 65.9
Solyc06g074720.4 Solanum lycopersicum HOM05D004585 ORTHO05D005640 8.3e-77 290.8 202 71.8
AL6G14230 Arabidopsis lyrata HOM05D004585 ORTHO05D005640 1.1e-76 290.4 220 63.2
PSO173G0033 Papaver somniferum HOM05D004585 ORTHO05D005640 1.1e-76 290.4 226 65.9
SGA_v2.0_scaffold10G05319 Striga asiatica HOM05D004585 ORTHO05D005640 2.4e-76 289.3 206 68.9
SGA_v2.0_scaffold113G31721 Striga asiatica HOM05D004585 ORTHO05D005640 2.4e-76 289.3 212 67.9
Nitab4.5_0003470g0110 Nicotiana tabacum HOM05D004585 ORTHO05D005640 4.1e-76 288.5 202 70.8
MSTRG.412 Avicennia marina HOM05D004585 ORTHO05D005640 5.4e-76 288.1 206 68.0
Lsat_1_v5_gn_2_86220 Lactuca sativa HOM05D004585 ORTHO05D005640 5.4e-76 288.1 215 65.1
Cpa.g.sc128.48 Carica papaya HOM05D004585 ORTHO05D005640 9.2e-76 287.3 198 70.2
AT5G04600 Arabidopsis thaliana HOM05D004585 ORTHO05D005640 1.2e-75 287.0 220 63.6
COL.COLO4_33895 Corchorus olitorius HOM05D004585 ORTHO05D005640 1.6e-75 286.6 183 73.2
Dinv30656 Davidia involucrata HOM05D004585 ORTHO05D005640 1.6e-75 286.6 214 68.2
SGA_v2.0_scaffold154G37190 Striga asiatica HOM05D004585 ORTHO05D005640 1.0e-74 283.9 211 65.9
Atru.chr10.1244 Acer truncatum HOM05D004585 ORTHO05D005640 3.9e-74 282.0 182 73.1
Migut.F01706 Erythranthe guttata HOM05D004585 ORTHO05D005640 5.1e-74 281.6 216 63.9
Ah.03g136890 Amaranthus hybridus HOM05D004585 ORTHO05D005640 1.1e-73 280.4 198 67.2
SalBow6G2458 Salvia bowleyana HOM05D004585 ORTHO05D005640 2.5e-73 279.3 249 58.6
ATR0068G115 Amborella trichopoda HOM05D004585 ORTHO05D005640 5.6e-73 278.1 213 62.9
FAN13G1680 Fragaria x ananassa HOM05D005925 ORTHO05D007270 1.2e-72 276.9 256 57.8
FAN18G1621 Fragaria x ananassa HOM05D005925 ORTHO05D007270 1.2e-72 276.9 256 57.8
Ah.16g102420 Amaranthus hybridus HOM05D004585 ORTHO05D005640 2.1e-72 276.2 199 66.8
Haze_22178 Corylus avellana HOM05D004585 ORTHO05D005640 2.1e-72 276.2 217 67.3
PSO210G0756 Papaver somniferum HOM05D004585 ORTHO05D005640 3.6e-72 275.4 202 66.3
CDE04G0123 Ceratophyllum demersum HOM05D004585 ORTHO05D005640 6.2e-72 274.6 214 62.6
Hund13887 Selenicereus undatus HOM05D004585 ORTHO05D005640 6.2e-72 274.6 186 69.4
Medtr4g127330 Medicago truncatula HOM05D004585 ORTHO05D005640 5.2e-71 271.6 180 76.7
Hund06922 Selenicereus undatus HOM05D004585 ORTHO05D005640 5.2e-71 271.6 204 64.2
CDE02G2408 Ceratophyllum demersum HOM05D000251 ORTHO05D002506 8.9e-71 270.8 214 63.1
Os08g0412200 Oryza sativa ssp. japonica HOM05D004585 ORTHO05D005640 3.4e-70 268.9 215 58.6
EL10Ac2g03709 Beta vulgaris HOM05D004585 ORTHO05D005640 9.9e-70 267.3 198 64.6
AUR62003699 Chenopodium quinoa HOM05D004585 ORTHO05D005640 1.3e-69 266.9 198 65.2
CSS0012030 Camellia sinensis var. sinensis HOM05D004585 ORTHO05D005640 1.4e-68 263.5 215 63.7
EL10Ac4g08678 Beta vulgaris HOM05D004585 ORTHO05D005640 3.3e-65 252.3 182 65.4
HPP92_008213 Vanilla planifolia HOM05D004585 ORTHO05D005640 1.2e-64 250.4 214 57.9
EL10Ac4g08675 Beta vulgaris HOM05D004585 ORTHO05D005640 4.7e-64 248.4 183 64.5
COL.COLO4_27310 Corchorus olitorius HOM05D004585 ORTHO05D005640 3.1e-63 245.7 144 79.2
Ciclev10033004m.g Citrus clementina HOM05D004585 ORTHO05D005640 1.4e-60 236.9 145 74.5
Zm00001eb178930 Zea mays HOM05D004585 ORTHO05D005640 4.3e-57 225.3 190 58.9
DCAR_012470 Daucus carota HOM05D004585 ORTHO05D005640 7.3e-57 224.6 146 74.0
TPR.G31410 Trifolium pratense HOM05D004585 ORTHO05D005640 2.0e-54 216.5 134 80.6
Oeu046197.1 Olea europaea HOM05D004585 ORTHO05D005640 1.2e-51 207.2 142 68.3
Lj6g0027575 Lotus japonicus HOM05D004585 ORTHO05D005640 5.6e-49 198.4 120 81.7
BolC2t06157H Brassica oleracea HOM05D004585 ORTHO05D005640 9.6e-49 197.6 154 60.4
Lj9A82T44 Lonicera japonica HOM05D004585 ORTHO05D005640 3.1e-47 192.6 150 64.7
Pp3c3_32540 Physcomitrium patens HOM05D004585 ORTHO05D005640 5.3e-47 191.8 218 47.7
DCAR_001331 Daucus carota HOM05D004585 ORTHO05D005640 3.4e-46 189.1 146 66.4
Pp3c8_3240 Physcomitrium patens HOM05D004585 ORTHO05D005640 1.3e-45 187.2 217 46.5
AagrBONN_evm.TU.Sc2ySwM_228.827 Anthoceros agrestis HOM05D004585 ORTHO05D005640 1.4e-44 183.7 143 59.4
AUR62018007 Chenopodium quinoa HOM05D004585 ORTHO05D005640 2.1e-43 179.9 126 68.3
Mapoly0059s0023 Marchantia polymorpha HOM05D004585 ORTHO05D005640 1.8e-42 176.8 160 52.5
SMO117G0347 Selaginella moellendorffii HOM05D004585 ORTHO05D005640 1.0e-37 161.0 204 40.2
Aqoxy1G00240 Aquilegia oxysepala HOM05D004585 ORTHO05D005640 3.8e-37 159.1 107 69.2
CBR_g11154 Chara braunii HOM05D004585 ORTHO05D005640 6.0e-35 151.8 198 42.4
MCO05G308 Micromonas commoda HOM05D004585 ORTHO05D005640 1.0e-34 151.0 143 46.2
Cre08.g368500 Chlamydomonas reinhardtii HOM05D004585 ORTHO05D005640 3.9e-34 149.1 178 40.4
unitig_26.g9455 Utricularia gibba HOM05D004585 ORTHO05D005640 9.6e-33 144.4 212 45.3
PRCOL_00003387 Prasinoderma coloniale HOM05D004585 ORTHO05D005640 5.8e-30 135.2 141 45.4
Cfa021710 Carpinus fangiana HOM05D004585 ORTHO05D005640 1.0e-29 134.4 184 39.7
TPR.G32073 Trifolium pratense HOM05D004585 ORTHO05D005640 9.3e-28 127.9 76 75.0
BcaC06g32170 Brassica carinata HOM05D004585 ORTHO05D005640 5.7e-25 118.6 75 68.0
Glyma.09G232800 Glycine max HOM05D004585 ORTHO05D005640 8.5e-21 104.8 82 70.7
Haze_26093 Corylus avellana HOM05D004585 ORTHO05D005640 4.2e-20 102.4 144 35.4
Oeu060262.1 Olea europaea HOM05D004585 ORTHO05D005640 5.5e-20 102.1 89 60.7
MD15G1436900 Malus domestica HOM05D004585 ORTHO05D005640 7.2e-20 101.7 75 65.3
COL.COLO4_14104 Corchorus olitorius HOM05D004585 ORTHO05D005736 1.1e-15 87.8 75 54.7
BcaB01g05909 Brassica carinata HOM05D004585 ORTHO05D005640 4.1e-15 85.9 56 66.1
MD15G1437000 Malus domestica HOM05D004585 ORTHO05D005640 4.1e-15 85.9 49 73.5
Oeu053518.1 Olea europaea HOM05D004585 ORTHO05D005640 5.3e-15 85.5 49 73.5
COL.COLO4_17533 Corchorus olitorius HOM05D001240 ORTHO05D002450 2.0e-14 83.6 75 52.0
EL10Ac7g17659 Beta vulgaris HOM05D004585 ORTHO05D005640 5.9e-14 82.0 69 53.6
MD15G1437100 Malus domestica HOM05D004585 ORTHO05D005640 7.7e-14 81.6 46 80.4
SalBow3G2087 Salvia bowleyana HOM05D004585 ORTHO05D005640 1.8e-10 70.5 42 76.2
EL10Ac2g02998 Beta vulgaris HOM05D000461 ORTHO05D005640 6.3e-08 62.0 56 53.6
PSO478G2622 Papaver somniferum HOM05D004585 ORTHO05D037280 3.1e-07 59.7 33 81.8
DCAR_009360 Daucus carota HOM05D003145 ORTHO05D003586 5.3e-07 58.9 90 34.4
vmacro07224 Vaccinium macrocarpon HOM05D004585 ORTHO05D037280 9.1e-07 58.2 34 70.6
TWI53G1090 Tripterygium wilfordii HOM05D000142 ORTHO05D001253 1.5e-06 57.4 87 32.2
PSO447G0101 Papaver somniferum HOM05D004585 ORTHO05D037280 2.0e-06 57.0 33 78.8
Os07g0124600 Oryza sativa ssp. japonica HOM05D000285 ORTHO05D000241 2.6e-06 56.6 84 36.9
CBR_g23080 Chara braunii HOM05D005565 ORTHO05D006950 4.5e-06 55.8 88 35.2
Cre13.g602850 Chlamydomonas reinhardtii HOM05D001869 ORTHO05D000124 7.7e-06 55.1 86 34.9


User provided reference genes

Program Settings