Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.005G083000 Phaseolus vulgaris HOM05D006220 ORTHO05D007590 1.8e-132 477.2 587 100.0
Glyma.12G222700 Glycine max HOM05D006220 ORTHO05D007590 6.7e-108 395.6 586 87.0
Glyma.13G278800 Glycine max HOM05D006220 ORTHO05D007590 1.5e-107 394.4 586 88.1
VMungo1080G0525 Vigna mungo HOM05D006220 ORTHO05D007590 7.7e-104 382.1 562 89.5
Lalb_Chr20g0109761 Lupinus albus HOM05D006220 ORTHO05D007590 1.2e-101 374.8 586 81.4
Lj3g0017554 Lotus japonicus HOM05D006220 ORTHO05D007590 2.6e-96 357.1 586 82.6
arahy.Tifrunner.gnm1.ann1.LU5I8Y Arachis hypogaea HOM05D006220 ORTHO05D007590 1.0e-95 355.1 592 75.5
arahy.Tifrunner.gnm1.ann1.BQ9KJC Arachis hypogaea HOM05D006220 ORTHO05D007590 3.2e-94 350.1 592 77.5
Psat5g245040 Pisum sativum HOM05D006220 ORTHO05D007590 2.1e-93 347.4 586 84.1
TPR.G38952 Trifolium pratense HOM05D006220 ORTHO05D007590 3.6e-93 346.7 598 76.9
Cfa020552 Carpinus fangiana HOM05D006220 ORTHO05D007590 1.2e-88 331.6 587 71.2
Medtr2g079560 Medicago truncatula HOM05D006220 ORTHO05D007590 1.5e-86 324.7 592 80.4
Thecc.07G079000 Theobroma cacao HOM05D006220 ORTHO05D007590 4.8e-82 309.7 586 70.0
GSVIVG01014371001 Vitis vinifera HOM05D006220 ORTHO05D007590 3.1e-81 307.0 586 71.2
Prupe.4G184800 Prunus persica HOM05D006220 ORTHO05D007590 9.1e-81 305.4 586 65.7
FAN25G1684 Fragaria x ananassa HOM05D006220 ORTHO05D007590 1.6e-80 304.7 588 79.9
Atru.chr2.2718 Acer truncatum HOM05D006220 ORTHO05D007590 2.0e-80 304.3 586 79.2
RcHm_v2.0_Chr5g0034391 Rosa chinensis HOM05D006220 ORTHO05D007590 2.2e-79 300.8 587 70.9
CANSAT56G4311 Cannabis sativa HOM05D006220 ORTHO05D007590 5.0e-79 299.7 586 75.8
Hma1.2p1_0148F.1_g066160 Hydrangea macrophylla HOM05D006220 ORTHO05D007590 8.5e-79 298.9 586 71.2
Manes.03G112900 Manihot esculenta HOM05D006220 ORTHO05D007590 1.2e-77 295.0 586 71.0
FvH4_3g20490 Fragaria vesca HOM05D006220 ORTHO05D007590 8.0e-77 292.4 588 79.3
MD11G1243700 Malus domestica HOM05D006220 ORTHO05D007590 8.0e-77 292.4 589 63.0
HanXRQChr03g0078511 Helianthus annuus HOM05D006220 ORTHO05D007590 1.8e-76 291.2 585 65.0
TWI38G2391 Tripterygium wilfordii HOM05D006220 ORTHO05D007590 1.8e-76 291.2 586 70.5
Potri.011G121700 Populus trichocarpa HOM05D006220 ORTHO05D007590 4.0e-76 290.0 586 78.8
FAN16G3027 Fragaria x ananassa HOM05D006220 ORTHO05D007590 5.2e-76 289.7 588 79.1
Gohir.A13G145200 Gossypium hirsutum HOM05D006220 ORTHO05D007590 6.8e-76 289.3 586 67.9
Hund22942 Selenicereus undatus HOM05D006220 ORTHO05D007590 4.4e-75 286.6 584 67.1
COL.COLO4_09426 Corchorus olitorius HOM05D006220 ORTHO05D007590 1.3e-74 285.0 586 70.3
Ciclev10007835m.g Citrus clementina HOM05D006220 ORTHO05D007590 3.7e-74 283.5 586 74.7
FAN11G1997 Fragaria x ananassa HOM05D006220 ORTHO05D007590 6.3e-74 282.7 602 71.1
Actinidia05212 Actinidia chinensis HOM05D006220 ORTHO05D007590 1.1e-73 282.0 586 74.4
Aqoxy4G01032 Aquilegia oxysepala HOM05D006220 ORTHO05D007590 1.2e-72 278.5 586 76.8
Sp3g13670 Schrenkiella parvula HOM05D006220 ORTHO05D007590 1.2e-72 278.5 588 65.8
Gohir.D13G150000 Gossypium hirsutum HOM05D006220 ORTHO05D007590 7.7e-72 275.8 586 68.1
CAN.G1110.52 Capsicum annuum HOM05D006220 ORTHO05D007590 1.3e-71 275.0 586 69.6
Gorai.013G167800 Gossypium raimondii HOM05D006220 ORTHO05D007590 1.3e-71 275.0 586 67.7
CSS0010017 Camellia sinensis var. sinensis HOM05D006220 ORTHO05D007590 6.6e-71 272.7 586 66.6
CsaV3_3G006190 Cucumis sativus L. HOM05D006220 ORTHO05D007590 1.5e-70 271.6 587 66.1
PGR031G1387 Punica granatum HOM05D006220 ORTHO05D007590 2.5e-70 270.8 585 66.3
Solyc10g006930.4 Solanum lycopersicum HOM05D006220 ORTHO05D007590 2.5e-70 270.8 586 68.6
Sopen10g002840 Solanum pennellii HOM05D006220 ORTHO05D007590 5.6e-70 269.6 586 69.5
TAR626G0245 Trochodendron aralioides HOM05D006220 ORTHO05D007590 9.5e-70 268.9 567 75.5
Cc05_g12250 Coffea canephora HOM05D006220 ORTHO05D007590 1.4e-68 265.0 586 68.3
MELO3C016523.2 Cucumis melo HOM05D006220 ORTHO05D007590 1.4e-68 265.0 587 64.7
ATR0680G100 Amborella trichopoda HOM05D006220 ORTHO05D007590 3.0e-68 263.8 587 79.2
PSO210G4054 Papaver somniferum HOM05D006220 ORTHO05D007590 2.9e-66 257.3 587 74.3
Zm00001eb259320 Zea mays HOM05D006220 ORTHO05D007590 8.3e-66 255.8 585 65.1
Sed0021838 Sechium edule HOM05D006220 ORTHO05D007590 3.2e-65 253.8 584 66.1
CDE05G0932 Ceratophyllum demersum HOM05D006220 ORTHO05D007590 9.2e-65 252.3 588 70.2
Os02g0826600 Oryza sativa ssp. japonica HOM05D006220 ORTHO05D007590 4.6e-64 250.0 587 61.8
Duzib213G0302 Durio zibethinus HOM05D006220 ORTHO05D007590 1.7e-63 248.1 508 69.7
PSO832G1845 Papaver somniferum HOM05D006220 ORTHO05D007590 1.7e-63 248.1 587 76.5
ECA240G2314 Erigeron canadensis HOM05D006220 ORTHO05D007590 1.1e-62 245.4 586 60.4
HPP92_022050 Vanilla planifolia HOM05D006220 ORTHO05D007590 4.7e-61 240.0 589 61.6
AL3G27960 Arabidopsis lyrata HOM05D006220 ORTHO05D007590 1.8e-60 238.0 586 62.5
Nitab4.5_0000207g0180 Nicotiana tabacum HOM05D006220 ORTHO05D007590 2.3e-60 237.7 313 54.0
THA.LOC104810484 Tarenaya hassleriana HOM05D006220 ORTHO05D007590 5.2e-60 236.5 585 64.4
EL10Ac4g08136 Beta vulgaris HOM05D006220 ORTHO05D007590 1.2e-59 235.3 565 71.7
Dinv08311 Davidia involucrata HOM05D006220 ORTHO05D007590 1.2e-59 235.3 406 73.9
Nn1g06599 Nelumbo nucifera HOM05D006220 ORTHO05D007590 1.2e-59 235.3 631 66.7
Eucgr.F03334 Eucalyptus grandis HOM05D006220 ORTHO05D007590 2.0e-59 234.6 584 66.4
AT3G15410 Arabidopsis thaliana HOM05D006220 ORTHO05D007590 9.8e-59 232.3 586 61.8
AUR62029364 Chenopodium quinoa HOM05D006220 ORTHO05D007590 1.7e-58 231.5 591 47.0
Sabra11G0107700 Salix brachista HOM05D006220 ORTHO05D007590 3.7e-58 230.3 686 61.5
DCAR_017149 Daucus carota HOM05D006220 ORTHO05D007590 1.1e-57 228.8 508 68.5
Oeu008016.1 Olea europaea HOM05D006220 ORTHO05D007590 1.1e-57 228.8 313 59.1
BcaB06g29573 Brassica carinata HOM05D006220 ORTHO05D007590 1.9e-57 228.0 587 61.8
Rhsim06G0196800 Rhododendron simsii HOM05D006220 ORTHO05D007590 2.0e-56 224.6 601 67.9
Carub.0003s1514 Capsella rubella HOM05D006220 ORTHO05D007590 4.6e-56 223.4 586 61.8
BraA05t22221Z Brassica rapa HOM05D006220 ORTHO05D007590 1.0e-55 222.2 593 61.2
Thhalv10020366m.g Eutrema salsugineum HOM05D006220 ORTHO05D007590 6.6e-55 219.5 588 60.9
Lsat_1_v5_gn_9_97140 Lactuca sativa HOM05D006220 ORTHO05D007590 1.1e-54 218.8 508 58.5
BolC5t33860H Brassica oleracea HOM05D006220 ORTHO05D007590 1.5e-54 218.4 593 61.4
CiPaw.11G172800 Carya illinoinensis HOM05D006220 ORTHO05D007590 2.1e-53 214.5 427 74.2
AUR62034280 Chenopodium quinoa HOM05D006220 ORTHO05D007590 1.4e-52 211.8 582 51.4
MD00G1090000 Malus domestica HOM05D006220 ORTHO05D007590 3.1e-52 210.7 560 59.8
MSTRG.14365 Avicennia marina HOM05D006220 ORTHO05D007590 6.8e-52 209.5 586 62.3
Migut.H01927 Erythranthe guttata HOM05D006220 ORTHO05D007590 8.9e-52 209.1 586 64.0
CARHR090460 Cardamine hirsuta HOM05D006220 ORTHO05D007590 1.5e-51 208.4 586 60.6
SGA_v2.0_scaffold9G04934 Striga asiatica HOM05D006220 ORTHO05D007590 4.4e-51 206.8 601 58.2
MBI17_g46353_MAGBIO Magnolia biondii HOM05D006220 ORTHO05D007590 4.1e-49 200.3 313 61.3
Haze_09468 Corylus avellana HOM05D006220 ORTHO05D007590 8.6e-47 192.6 223 62.8
BcaC05g29008 Brassica carinata HOM05D006220 ORTHO05D007590 1.5e-46 191.8 565 61.8
ClCG10G006830 Citrullus lanatus HOM05D006220 ORTHO05D007590 2.5e-46 191.0 533 60.8
Cpa.g.sc80.40 Carica papaya HOM05D006220 ORTHO05D007590 4.3e-46 190.3 592 58.3
A05p33990 Brassica napus HOM05D006220 ORTHO05D007590 1.6e-45 188.3 566 59.7
vmacro11856 Vaccinium macrocarpon HOM05D006220 ORTHO05D007590 8.1e-45 186.0 583 63.5
Nitab4.5_0001320g0170 Nicotiana tabacum HOM05D006220 ORTHO05D007590 8.9e-44 182.6 313 52.1
Hma1.2p1_0148F.1_g066170 Hydrangea macrophylla HOM05D006220 ORTHO05D007590 2.0e-43 181.4 235 55.7
Aa31LG8G2650 Aethionema arabicum HOM05D006220 ORTHO05D007590 2.6e-43 181.0 646 52.3
Peaxi162Scf00027g02813 Petunia axillaris HOM05D006220 ORTHO05D007590 1.7e-42 178.3 564 64.4
Mapoly0029s0091 Marchantia polymorpha HOM05D006220 ORTHO05D007590 2.2e-42 177.9 592 62.0
AagrBONN_evm.TU.Sc2ySwM_362.1464 Anthoceros agrestis HOM05D006220 ORTHO05D007590 3.8e-42 177.2 595 53.3
Sc16g0006920 Simmondsia chinensis HOM05D006220 ORTHO05D007590 9.2e-41 172.6 508 60.6
arahy.Tifrunner.gnm1.ann1.XCJ8AH Arachis hypogaea HOM05D006220 ORTHO05D007590 7.3e-38 162.9 236 56.4
Pp3c6_15930 Physcomitrium patens HOM05D006220 ORTHO05D007590 6.2e-37 159.8 597 56.4
unitig_26.g9535 Utricularia gibba HOM05D006220 ORTHO05D007590 6.9e-36 156.4 561 33.2
SalBow7G3592 Salvia bowleyana HOM05D006220 ORTHO05D007590 2.6e-35 154.5 561 52.6
SMO200G0168 Selaginella moellendorffii HOM05D006220 ORTHO05D007590 9.9e-35 152.5 589 63.5
Lj1A847G19 Lonicera japonica HOM05D006220 ORTHO05D007590 3.8e-34 150.6 544 65.8
C05p51740 Brassica napus HOM05D006220 ORTHO05D007590 5.1e-31 140.2 289 46.7
MD11G1243500 Malus domestica HOM05D006220 ORTHO05D007590 6.9e-28 129.8 198 58.6
FAN11G3846 Fragaria x ananassa HOM05D000189 ORTHO05D007610 3.7e-21 107.5 90 63.3
Sabra11G0106700 Salix brachista HOM05D006220 ORTHO05D007590 5.8e-19 100.1 77 66.2
Sabra11G0107000 Salix brachista HOM05D006220 ORTHO05D007590 5.8e-19 100.1 77 66.2
Sabra11G0105900 Salix brachista HOM05D006220 ORTHO05D007590 1.7e-18 98.6 77 64.9
HPP92_027622 Vanilla planifolia HOM05D006220 ORTHO05D007590 2.2e-18 98.2 77 63.6
Sabra11G0105600 Salix brachista HOM05D006220 ORTHO05D007590 3.8e-18 97.4 77 64.9
Nitab4.5_0001320g0180 Nicotiana tabacum HOM05D006220 ORTHO05D007590 8.4e-18 96.3 100 53.0
CBR_g29878 Chara braunii HOM05D006220 ORTHO05D007590 3.2e-17 94.4 241 40.2
Gohir.1Z049312 Gossypium hirsutum HOM05D006220 ORTHO05D007590 3.2e-17 94.4 76 65.8
Thecc.07G078400 Theobroma cacao HOM05D006220 ORTHO05D007590 1.6e-16 92.0 100 76.0
vmacro07967 Vaccinium macrocarpon HOM05D004270 ORTHO05D007590 3.9e-15 87.4 61 70.5
Cc05_g12270 Coffea canephora HOM05D006220 ORTHO05D007590 3.7e-13 80.9 104 72.1
Cc05_g12290 Coffea canephora HOM05D006220 ORTHO05D007590 3.7e-13 80.9 104 72.1
Cc05_g12300 Coffea canephora HOM05D006220 ORTHO05D007590 3.7e-13 80.9 104 72.1
Haze_09464 Corylus avellana HOM05D006220 ORTHO05D007590 4.8e-13 80.5 55 69.1
Sc13g0008670 Simmondsia chinensis HOM05D006220 ORTHO05D007590 4.8e-13 80.5 98 71.4
HanXRQChr09g0260971 Helianthus annuus HOM05D006220 ORTHO05D007590 1.8e-12 78.6 62 58.1
Atru.chr2.2722 Acer truncatum HOM05D006220 ORTHO05D017154 1.5e-11 75.5 44 84.1
CBR_g29877 Chara braunii HOM05D005358 ORTHO05D006384 1.0e-10 72.8 77 48.1
Lsat_1_v5_gn_9_85500 Lactuca sativa HOM05D006220 ORTHO05D007590 6.5e-10 70.1 61 55.7
Cre01.g054100 Chlamydomonas reinhardtii HOM05D006220 ORTHO05D007590 1.5e-06 58.9 226 49.6
MCO03G083 Micromonas commoda HOM05D006220 ORTHO05D007590 3.3e-06 57.8 295 26.8


User provided reference genes

Program Settings