Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.005G082701 Phaseolus vulgaris HOM05D003840 ORTHO05D004565 7.8e-80 300.4 156 100.0
Phvul.007G273700 Phaseolus vulgaris HOM05D003840 ORTHO05D004565 2.7e-48 195.7 100 97.0
Phvul.011G177700 Phaseolus vulgaris HOM05D003840 ORTHO05D004565 2.7e-48 195.7 100 97.0
Glyma.13G278500 Glycine max HOM05D003840 ORTHO05D004565 3.0e-47 192.2 99 96.0
Glyma.12G223000 Glycine max HOM05D003840 ORTHO05D004565 8.7e-47 190.7 99 96.0
VMungo1080G0416 Vigna mungo HOM05D003840 ORTHO05D004565 3.3e-46 188.7 99 94.9
CANSAT56G3533 Cannabis sativa HOM05D003840 ORTHO05D004565 7.4e-46 187.6 99 92.9
Potri.001G402500 Populus trichocarpa HOM05D003840 ORTHO05D004565 3.1e-44 182.2 99 89.9
Lalb_Chr01g0016961 Lupinus albus HOM05D003840 ORTHO05D004565 4.0e-44 181.8 99 90.9
Rhsim04G0019800 Rhododendron simsii HOM05D003840 ORTHO05D004565 5.3e-44 181.4 99 88.9
Thecc.06G008900 Theobroma cacao HOM05D003840 ORTHO05D004565 6.9e-44 181.0 100 88.0
Sabra16G0264000 Salix brachista HOM05D003840 ORTHO05D004565 9.0e-44 180.6 99 88.9
CiPaw.08G146100 Carya illinoinensis HOM05D003840 ORTHO05D004565 2.0e-43 179.5 99 89.9
CiPaw.12G120400 Carya illinoinensis HOM05D003840 ORTHO05D004565 2.0e-43 179.5 99 88.9
Hma1.2p1_0148F.1_g066150 Hydrangea macrophylla HOM05D003840 ORTHO05D004565 2.0e-43 179.5 100 86.0
Manes.03G112600 Manihot esculenta HOM05D003840 ORTHO05D004565 2.6e-43 179.1 99 88.9
arahy.Tifrunner.gnm1.ann1.D4F45X Arachis hypogaea HOM05D003840 ORTHO05D004565 4.5e-43 178.3 99 88.9
Cc05_g12240 Coffea canephora HOM05D003840 ORTHO05D004565 4.5e-43 178.3 99 87.9
Gohir.A04G028700 Gossypium hirsutum HOM05D003840 ORTHO05D004565 4.5e-43 178.3 99 88.9
Gohir.D05G358600 Gossypium hirsutum HOM05D003840 ORTHO05D004565 4.5e-43 178.3 99 88.9
Gorai.009G434700 Gossypium raimondii HOM05D003840 ORTHO05D004565 4.5e-43 178.3 99 88.9
Lalb_Chr25g0286531 Lupinus albus HOM05D003840 ORTHO05D004565 4.5e-43 178.3 99 89.9
Dinv18297 Davidia involucrata HOM05D003840 ORTHO05D004565 7.6e-43 177.6 99 87.9
Oeu005421.1 Olea europaea HOM05D003840 ORTHO05D004565 7.6e-43 177.6 99 84.8
CSS0003611 Camellia sinensis var. sinensis HOM05D003840 ORTHO05D004565 1.0e-42 177.2 99 85.9
Nn1g06588 Nelumbo nucifera HOM05D003840 ORTHO05D004565 1.0e-42 177.2 99 85.9
arahy.Tifrunner.gnm1.ann1.7MJ4MY Arachis hypogaea HOM05D003840 ORTHO05D004565 1.3e-42 176.8 99 87.9
Manes.01G147800 Manihot esculenta HOM05D003840 ORTHO05D004565 1.3e-42 176.8 99 85.9
Atru.chr2.2716 Acer truncatum HOM05D003840 ORTHO05D004565 1.7e-42 176.4 99 85.9
TWI53G0481 Tripterygium wilfordii HOM05D003840 ORTHO05D004565 1.7e-42 176.4 99 87.9
Cpa.g.sc80.41 Carica papaya HOM05D003840 ORTHO05D004565 2.2e-42 176.0 99 87.9
HanXRQChr13g0407421 Helianthus annuus HOM05D003840 ORTHO05D004565 2.2e-42 176.0 99 85.9
Oeu060544.1 Olea europaea HOM05D003840 ORTHO05D004565 2.2e-42 176.0 99 83.8
TAR626G1410 Trochodendron aralioides HOM05D003840 ORTHO05D004565 2.2e-42 176.0 99 86.9
GSVIVG01014369001 Vitis vinifera HOM05D003840 ORTHO05D004565 2.2e-42 176.0 99 86.9
Haze_09463 Corylus avellana HOM05D003840 ORTHO05D004565 2.9e-42 175.6 100 86.0
Lj5g0011990 Lotus japonicus HOM05D003840 ORTHO05D004565 2.9e-42 175.6 99 87.9
TAR624G1142 Trochodendron aralioides HOM05D003840 ORTHO05D004565 2.9e-42 175.6 99 86.9
Cfa020553 Carpinus fangiana HOM05D003840 ORTHO05D004565 3.8e-42 175.3 100 86.0
Actinidia35256 Actinidia chinensis HOM05D003840 ORTHO05D004565 4.9e-42 174.9 99 82.8
Ca_01831_v3 Cicer arietinum L. HOM05D003840 ORTHO05D004565 4.9e-42 174.9 99 85.9
THA.LOC104818066 Tarenaya hassleriana HOM05D003840 ORTHO05D004565 6.5e-42 174.5 99 86.9
Aqoxy4G01004 Aquilegia oxysepala HOM05D003840 ORTHO05D004565 8.4e-42 174.1 99 86.9
Sc07g0002600 Simmondsia chinensis HOM05D003840 ORTHO05D004565 8.4e-42 174.1 99 83.8
Eucgr.F03333 Eucalyptus grandis HOM05D003840 ORTHO05D004565 1.1e-41 173.7 99 86.9
Ciclev10007878m.g Citrus clementina HOM05D003840 ORTHO05D004565 1.4e-41 173.3 99 84.8
Duzib213G0026 Durio zibethinus HOM05D003840 ORTHO05D004565 1.4e-41 173.3 99 86.9
THA.LOC104810482 Tarenaya hassleriana HOM05D003840 ORTHO05D004565 1.4e-41 173.3 99 84.8
Migut.M00853 Erythranthe guttata HOM05D003840 ORTHO05D004565 2.5e-41 172.6 99 82.8
Lsat_1_v5_gn_9_97121 Lactuca sativa HOM05D003840 ORTHO05D004565 2.5e-41 172.6 99 83.8
SGA_v2.0_scaffold73G24291 Striga asiatica HOM05D003840 ORTHO05D004565 2.5e-41 172.6 99 83.8
HPP92_027892 Vanilla planifolia HOM05D003840 ORTHO05D004565 3.2e-41 172.2 99 82.8
Solyc07g063270.3 Solanum lycopersicum HOM05D003840 ORTHO05D004565 5.5e-41 171.4 99 82.8
Sopen07g031450 Solanum pennellii HOM05D003840 ORTHO05D004565 5.5e-41 171.4 99 82.8
CsaV3_5G037440 Cucumis sativus L. HOM05D003840 ORTHO05D004565 7.1e-41 171.0 99 85.9
SalBow7G0398 Salvia bowleyana HOM05D003840 ORTHO05D004565 7.1e-41 171.0 99 80.8
SalBow7G4534 Salvia bowleyana HOM05D003840 ORTHO05D004565 7.1e-41 171.0 99 80.8
PGR031G3608 Punica granatum HOM05D003840 ORTHO05D004565 1.2e-40 170.2 99 83.8
Dinv08310 Davidia involucrata HOM05D003840 ORTHO05D004565 1.6e-40 169.9 114 74.6
MSTRG.15219 Avicennia marina HOM05D003840 ORTHO05D004565 2.7e-40 169.1 99 81.8
PGSC0003DMG400012452 Solanum tuberosum HOM05D003840 ORTHO05D004565 2.7e-40 169.1 99 81.8
Peaxi162Scf00069g01212 Petunia axillaris HOM05D003840 ORTHO05D004565 4.6e-40 168.3 99 82.8
Psat6g240320 Pisum sativum HOM05D003840 ORTHO05D004565 4.6e-40 168.3 99 82.8
Os03g0352400 Oryza sativa ssp. japonica HOM05D003840 ORTHO05D004565 6.0e-40 167.9 98 83.7
Nitab4.5_0003769g0030 Nicotiana tabacum HOM05D003840 ORTHO05D004565 1.0e-39 167.2 99 81.8
RcHm_v2.0_Chr7g0222551 Rosa chinensis HOM05D003840 ORTHO05D004565 1.0e-39 167.2 100 80.0
Lj8A157T55 Lonicera japonica HOM05D003840 ORTHO05D004565 1.3e-39 166.8 99 80.8
Medtr2g079510 Medicago truncatula HOM05D003840 ORTHO05D004565 2.3e-39 166.0 99 80.8
COL.COLO4_09425 Corchorus olitorius HOM05D003840 ORTHO05D004565 5.1e-39 164.9 99 81.8
unitig_46.g18324 Utricularia gibba HOM05D003840 ORTHO05D004565 6.7e-39 164.5 99 78.8
HPP92_018299 Vanilla planifolia HOM05D003840 ORTHO05D004565 6.7e-39 164.5 130 67.7
TWI73G0301 Tripterygium wilfordii HOM05D003840 ORTHO05D004565 1.1e-38 163.7 99 82.8
vmacro09541 Vaccinium macrocarpon HOM05D003840 ORTHO05D004565 3.3e-38 162.2 93 86.0
Thhalv10011345m.g Eutrema salsugineum HOM05D003840 ORTHO05D004565 5.7e-38 161.4 99 79.8
DCAR_013090 Daucus carota HOM05D003840 ORTHO05D004565 7.4e-38 161.0 99 78.8
SEGI_28100 Sequoiadendron giganteum HOM05D003840 ORTHO05D004565 7.4e-38 161.0 99 78.8
Hund22938 Selenicereus undatus HOM05D003840 ORTHO05D004565 9.7e-38 160.6 99 81.8
TPR.G28203 Trifolium pratense HOM05D003840 ORTHO05D004565 9.7e-38 160.6 99 79.8
Sed0025069 Sechium edule HOM05D003840 ORTHO05D004565 1.3e-37 160.2 99 81.8
Nitab4.5_0011553g0010 Nicotiana tabacum HOM05D003840 ORTHO05D004565 1.6e-37 159.8 107 75.7
TPR.G39016 Trifolium pratense HOM05D003840 ORTHO05D004565 1.6e-37 159.8 98 80.6
MD00G1089700 Malus domestica HOM05D003840 ORTHO05D004565 2.8e-37 159.1 102 76.5
Prupe.4G184700 Prunus persica HOM05D003840 ORTHO05D004565 2.8e-37 159.1 102 75.5
Aa31LG10G2130 Aethionema arabicum HOM05D003840 ORTHO05D004565 4.8e-37 158.3 99 77.8
AT1G52980 Arabidopsis thaliana HOM05D003840 ORTHO05D004565 4.8e-37 158.3 99 77.8
Carub.0001s4212 Capsella rubella HOM05D003840 ORTHO05D004565 6.3e-37 157.9 99 76.8
ECA240G0083 Erigeron canadensis HOM05D003840 ORTHO05D004565 6.3e-37 157.9 99 76.8
PSO210G5630 Papaver somniferum HOM05D003840 ORTHO05D004565 1.1e-36 157.1 99 74.7
ClCG09G018660 Citrullus lanatus HOM05D003840 ORTHO05D004565 1.4e-36 156.8 131 65.6
MD03G1224500 Malus domestica HOM05D003840 ORTHO05D004565 1.4e-36 156.8 136 64.7
PSO832G0205 Papaver somniferum HOM05D003840 ORTHO05D004565 1.8e-36 156.4 104 72.1
BcaB02g10967 Brassica carinata HOM05D003840 ORTHO05D004565 2.4e-36 156.0 99 75.8
BcaB07g33370 Brassica carinata HOM05D003840 ORTHO05D004565 2.4e-36 156.0 99 75.8
Sp1g39540 Schrenkiella parvula HOM05D003840 ORTHO05D004565 2.4e-36 156.0 99 75.8
BcaC08g44019 Brassica carinata HOM05D003840 ORTHO05D004565 3.1e-36 155.6 99 74.7
BolC6t36608H Brassica oleracea HOM05D003840 ORTHO05D004565 3.1e-36 155.6 99 74.7
BcaC08g43481 Brassica carinata HOM05D003840 ORTHO05D004565 4.1e-36 155.2 99 74.7
A06p01380 Brassica napus HOM05D003840 ORTHO05D004565 4.1e-36 155.2 99 74.7
C06p08670 Brassica napus HOM05D003840 ORTHO05D004565 4.1e-36 155.2 99 74.7
BraA06t23360Z Brassica rapa HOM05D003840 ORTHO05D004565 4.1e-36 155.2 99 74.7
C06p14330 Brassica napus HOM05D003840 ORTHO05D004565 5.3e-36 154.8 98 75.5
Medtr4g081850 Medicago truncatula HOM05D003840 ORTHO05D004565 5.3e-36 154.8 104 74.0
ATR0680G057 Amborella trichopoda HOM05D003840 ORTHO05D004565 1.5e-35 153.3 99 76.8
Zm00001eb016990 Zea mays HOM05D003840 ORTHO05D004565 3.4e-35 152.1 100 73.0
AL1G61320 Arabidopsis lyrata HOM05D003840 ORTHO05D004565 1.7e-34 149.8 99 73.7
FvH4_5g29580 Fragaria vesca HOM05D003840 ORTHO05D004565 2.9e-34 149.1 99 73.7
FAN04G1578 Fragaria x ananassa HOM05D003840 ORTHO05D004565 2.9e-34 149.1 99 73.7
FAN18G3753 Fragaria x ananassa HOM05D003840 ORTHO05D004565 2.9e-34 149.1 99 73.7
QL08p020021 Quercus lobata HOM05D003840 ORTHO05D004565 3.8e-34 148.7 99 69.7
EL10Ac4g08140 Beta vulgaris HOM05D003840 ORTHO05D004565 8.5e-34 147.5 99 72.7
FAN13G0946 Fragaria x ananassa HOM05D003840 ORTHO05D004565 1.1e-33 147.1 99 72.7
Lj3g0017419 Lotus japonicus HOM05D003840 ORTHO05D004565 2.5e-33 146.0 99 73.7
Sed0017316 Sechium edule HOM05D003840 ORTHO05D004565 9.4e-33 144.1 99 71.7
CARHR224670 Cardamine hirsuta HOM05D003840 ORTHO05D004565 3.6e-32 142.1 97 70.1
PSO782G4342 Papaver somniferum HOM05D003840 ORTHO05D004565 3.6e-32 142.1 98 70.4
SHI05032 Sapria himalayana HOM05D003840 ORTHO05D004565 3.6e-32 142.1 99 71.7
SGA_v2.0_scaffold34G13732 Striga asiatica HOM05D003840 ORTHO05D004565 7.9e-32 141.0 100 71.0
CARHR043180 Cardamine hirsuta HOM05D003840 ORTHO05D004565 2.3e-31 139.4 99 68.7
Ah.03g144680 Amaranthus hybridus HOM05D003840 ORTHO05D004565 5.1e-31 138.3 99 68.7
Mapoly0122s0018 Marchantia polymorpha HOM05D003840 ORTHO05D004565 1.5e-30 136.7 99 65.7
AUR62034278 Chenopodium quinoa HOM05D003840 ORTHO05D004565 7.4e-30 134.4 99 66.7
SMO367G1211 Selaginella moellendorffii HOM05D003840 ORTHO05D004565 1.7e-29 133.3 103 63.1
MD10G1052400 Malus domestica HOM05D003840 ORTHO05D004565 1.1e-28 130.6 99 68.7
Pp3c1_3230 Physcomitrium patens HOM05D003840 ORTHO05D004565 2.6e-27 125.9 95 63.2
Ca_01830_v3 Cicer arietinum L. HOM05D003840 ORTHO05D004565 1.7e-26 123.2 99 62.6
Nitab4.5_0003769g0100 Nicotiana tabacum HOM05D003840 ORTHO05D004565 8.5e-26 120.9 91 65.9
AagrBONN_evm.TU.Sc2ySwM_117.381 Anthoceros agrestis HOM05D003840 ORTHO05D004565 3.2e-25 119.0 101 59.4
AagrBONN_evm.TU.Sc2ySwM_344.5148 Anthoceros agrestis HOM05D003840 ORTHO05D004565 3.2e-25 119.0 101 59.4
PRCOL_00004437 Prasinoderma coloniale HOM05D003840 ORTHO05D004565 2.6e-22 109.4 94 57.4
Ah.02g127530 Amaranthus hybridus HOM05D003840 ORTHO05D004565 7.4e-22 107.8 88 59.1
Cre07.g340050 Chlamydomonas reinhardtii HOM05D003840 ORTHO05D004565 3.1e-20 102.4 99 53.5
Nitab4.5_0010521g0010 Nicotiana tabacum HOM05D003840 ORTHO05D004565 6.5e-18 94.7 112 50.9
RcHm_v2.0_Chr4g0433481 Rosa chinensis HOM05D003840 ORTHO05D004565 1.9e-17 93.2 56 78.6
Haze_27102 Corylus avellana HOM05D003840 ORTHO05D004565 5.5e-17 91.7 106 39.6
Aqoxy3G02137 Aquilegia oxysepala HOM05D003840 ORTHO05D004565 2.1e-16 89.7 61 75.4
MCO07G526 Micromonas commoda HOM05D003840 ORTHO05D004565 2.1e-16 89.7 101 45.5
MELO3C033647.2 Cucumis melo HOM05D003840 ORTHO05D004565 1.5e-14 83.6 90 54.4
PSO832G2656 Papaver somniferum HOM05D003840 ORTHO05D004565 2.0e-14 83.2 56 69.6
Cfa026970 Carpinus fangiana HOM05D003840 ORTHO05D004565 4.4e-14 82.0 127 38.6
PGSC0003DMG400016932 Solanum tuberosum HOM05D003840 ORTHO05D004565 9.7e-14 80.9 66 54.5
PSO210G3517 Papaver somniferum HOM05D003840 ORTHO05D004565 3.7e-13 79.0 56 64.3
Solyc07g063280.3 Solanum lycopersicum HOM05D003840 ORTHO05D004565 4.8e-13 78.6 61 57.4
PGSC0003DMG400028011 Solanum tuberosum HOM05D003840 ORTHO05D004565 8.2e-13 77.8 101 45.5
PGSC0003DMG400015436 Solanum tuberosum HOM05D003840 ORTHO05D004565 1.1e-12 77.4 101 44.6
FAN14G4652 Fragaria x ananassa HOM05D003840 ORTHO05D004565 5.3e-12 75.1 59 62.7
FvH4_6g33850 Fragaria vesca HOM05D003840 ORTHO05D004565 7.0e-12 74.7 55 61.8
FAN08G1280 Fragaria x ananassa HOM05D003840 ORTHO05D004565 9.1e-12 74.3 56 64.3
PGSC0003DMG400012453 Solanum tuberosum HOM05D003840 ORTHO05D004565 2.0e-11 73.2 55 60.0
CARHR032500 Cardamine hirsuta HOM05D003840 ORTHO05D004565 6.5e-10 68.2 44 72.7
Manes.03G112800 Manihot esculenta HOM05D003840 ORTHO05D004565 7.2e-09 64.7 49 61.2
Peaxi162Scf00052g02012 Petunia axillaris HOM05D003840 ORTHO05D004565 7.2e-09 64.7 71 49.3
Lj4g0017191 Lotus japonicus HOM05D003840 ORTHO05D237060 9.4e-09 64.3 72 50.0
TPR.G38959 Trifolium pratense HOM05D003840 ORTHO05D004565 9.4e-09 64.3 47 68.1
Lj4g0007507 Lotus japonicus HOM05D003840 ORTHO05D004565 1.8e-07 60.1 72 52.8


User provided reference genes

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