Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.005G057920 Phaseolus vulgaris HOM05D005636 ORTHO05D006912 2.2e-210 735.3 355 100.0
Phvul.002G231100 Phaseolus vulgaris HOM05D005636 ORTHO05D006912 4.8e-202 707.6 355 96.3
Glyma.20G056400 Glycine max HOM05D005636 ORTHO05D006912 8.0e-189 663.7 354 91.5
Lj6g0012077 Lotus japonicus HOM05D005636 ORTHO05D006912 1.0e-167 593.6 356 81.7
VMungo0540G1884 Vigna mungo HOM05D005636 ORTHO05D006912 3.6e-165 585.1 327 86.5
Psat5g112320 Pisum sativum HOM05D005636 ORTHO05D006912 1.8e-164 582.8 356 80.1
TPR.G37891 Trifolium pratense HOM05D005636 ORTHO05D006912 1.8e-164 582.8 356 81.7
Ca_16256_v3 Cicer arietinum L. HOM05D005636 ORTHO05D006912 5.2e-164 581.3 356 81.5
Medtr3g079530 Medicago truncatula HOM05D005636 ORTHO05D006912 2.9e-162 575.5 353 80.5
Medtr1g046360 Medicago truncatula HOM05D005636 ORTHO05D006912 1.3e-159 566.6 353 79.0
VMungo0540G1461 Vigna mungo HOM05D005636 ORTHO05D006912 4.0e-156 555.1 321 85.4
arahy.Tifrunner.gnm1.ann1.59ND6F Arachis hypogaea HOM05D005636 ORTHO05D006912 3.3e-150 535.4 386 70.7
Lalb_Chr17g0335961 Lupinus albus HOM05D005636 ORTHO05D006912 1.2e-131 473.8 355 68.7
Lalb_Chr04g0257641 Lupinus albus HOM05D005636 ORTHO05D006912 1.5e-115 420.2 225 88.0
Ciclev10031950m.g Citrus clementina HOM05D005636 ORTHO05D006912 2.7e-112 409.5 356 59.8
MD17G1140200 Malus domestica HOM05D005636 ORTHO05D006912 3.5e-112 409.1 354 59.0
MD09G1152800 Malus domestica HOM05D005636 ORTHO05D006912 7.4e-110 401.4 354 58.2
Potri.002G060600 Populus trichocarpa HOM05D005636 ORTHO05D006912 2.8e-109 399.4 355 56.9
Thecc.01G161100 Theobroma cacao HOM05D005636 ORTHO05D006912 3.1e-108 396.0 364 56.6
Dinv31558 Davidia involucrata HOM05D005636 ORTHO05D006912 4.1e-108 395.6 351 58.1
Duzib187G1993 Durio zibethinus HOM05D005636 ORTHO05D006912 5.3e-108 395.2 359 57.1
Sabra02G0049100 Salix brachista HOM05D005636 ORTHO05D006912 5.3e-108 395.2 355 56.3
CSS0038062 Camellia sinensis var. sinensis HOM05D005636 ORTHO05D006912 8.5e-106 387.9 356 58.1
Atru.chr1.3606 Acer truncatum HOM05D005636 ORTHO05D006912 4.2e-105 385.6 353 55.8
COL.COLO4_33742 Corchorus olitorius HOM05D005636 ORTHO05D006912 7.2e-105 384.8 364 56.3
Cpa.g.sc50.79 Carica papaya HOM05D005636 ORTHO05D006912 9.4e-105 384.4 357 56.3
FAN14G2746 Fragaria x ananassa HOM05D005636 ORTHO05D006912 1.6e-104 383.6 356 56.2
RcHm_v2.0_Chr2g0151351 Rosa chinensis HOM05D005636 ORTHO05D006912 2.1e-104 383.3 366 56.0
Manes.02G084000 Manihot esculenta HOM05D005636 ORTHO05D006912 3.6e-104 382.5 351 57.3
Actinidia11200 Actinidia chinensis HOM05D005636 ORTHO05D006912 4.6e-104 382.1 356 57.6
FvH4_6g38130 Fragaria vesca HOM05D005636 ORTHO05D006912 3.0e-103 379.4 364 54.9
FAN09G4115 Fragaria x ananassa HOM05D005636 ORTHO05D006912 3.3e-102 375.9 358 55.6
Hma1.2p1_0722F.1_g208750 Hydrangea macrophylla HOM05D005636 ORTHO05D006912 9.7e-102 374.4 359 57.4
FAN05G0596 Fragaria x ananassa HOM05D005636 ORTHO05D006912 1.7e-101 373.6 356 55.1
Gohir.D04G036900 Gossypium hirsutum HOM05D005636 ORTHO05D006912 1.8e-100 370.2 355 54.9
Gohir.A05G378700 Gossypium hirsutum HOM05D005636 ORTHO05D006912 6.9e-100 368.2 345 55.9
Gorai.012G041700 Gossypium raimondii HOM05D005636 ORTHO05D006912 6.9e-100 368.2 355 54.6
CsaV3_6G038020 Cucumis sativus L. HOM05D005636 ORTHO05D006912 3.4e-99 365.9 353 53.8
Prupe.3G171400 Prunus persica HOM05D005636 ORTHO05D006912 2.9e-98 362.8 328 58.8
Eucgr.K01200 Eucalyptus grandis HOM05D005636 ORTHO05D006912 5.0e-98 362.1 333 55.6
MELO3C014464.2 Cucumis melo HOM05D005636 ORTHO05D006912 1.9e-97 360.1 356 52.5
Cc05_g09330 Coffea canephora HOM05D005636 ORTHO05D006912 5.5e-97 358.6 353 54.7
GSVIVG01000791001 Vitis vinifera HOM05D005636 ORTHO05D006912 5.5e-97 358.6 224 75.0
Nitab4.5_0001675g0040 Nicotiana tabacum HOM05D005636 ORTHO05D006912 7.2e-97 358.2 355 53.5
PGR142G4384 Punica granatum HOM05D005636 ORTHO05D006912 7.2e-97 358.2 375 53.3
Cfa022913 Carpinus fangiana HOM05D005636 ORTHO05D006912 9.4e-97 357.8 224 75.0
Oeu040028.1 Olea europaea HOM05D005636 ORTHO05D006912 9.4e-97 357.8 352 54.8
Aa31LG10G13390 Aethionema arabicum HOM05D005636 ORTHO05D006912 2.7e-96 356.3 268 64.6
THA.LOC104802275 Tarenaya hassleriana HOM05D005636 ORTHO05D006912 3.6e-96 355.9 270 65.6
PGSC0003DMG400017343 Solanum tuberosum HOM05D005636 ORTHO05D006912 7.9e-96 354.8 310 58.4
Potri.005G201100 Populus trichocarpa HOM05D005636 ORTHO05D006912 1.0e-95 354.4 224 72.3
Sabra05G0153000 Salix brachista HOM05D005636 ORTHO05D006912 1.0e-95 354.4 224 72.8
AL5G40630 Arabidopsis lyrata HOM05D005636 ORTHO05D006912 1.1e-94 350.9 234 69.7
Rhsim06G0118100 Rhododendron simsii HOM05D005636 ORTHO05D006912 2.0e-94 350.1 397 49.4
Sopen07g029330 Solanum pennellii HOM05D005636 ORTHO05D006912 3.3e-94 349.4 320 57.5
SGA_v2.0_scaffold130G34360 Striga asiatica HOM05D005636 ORTHO05D006912 4.4e-94 349.0 354 52.5
SalBow7G3906 Salvia bowleyana HOM05D005636 ORTHO05D006912 5.7e-94 348.6 351 53.0
Lsat_1_v5_gn_8_32020 Lactuca sativa HOM05D005636 ORTHO05D006912 7.4e-94 348.2 276 63.0
CARHR169230 Cardamine hirsuta HOM05D005636 ORTHO05D006912 2.2e-93 346.7 224 69.6
AT3G58830 Arabidopsis thaliana HOM05D005636 ORTHO05D006912 2.8e-93 346.3 234 68.8
CiPaw.03G189200 Carya illinoinensis HOM05D005636 ORTHO05D006912 2.8e-93 346.3 220 74.5
BcaB02g07496 Brassica carinata HOM05D005636 ORTHO05D006912 6.3e-93 345.1 267 62.2
Solyc07g055980.3 Solanum lycopersicum HOM05D005636 ORTHO05D006912 8.2e-93 344.7 301 57.8
BcaC08g44944 Brassica carinata HOM05D005636 ORTHO05D006912 1.1e-92 344.4 222 70.7
Nitab4.5_0006934g0010 Nicotiana tabacum HOM05D005636 ORTHO05D006912 1.8e-92 343.6 352 50.3
A07p24370 Brassica napus HOM05D005636 ORTHO05D006912 2.4e-92 343.2 288 60.1
C06p25760 Brassica napus HOM05D005636 ORTHO05D006912 2.4e-92 343.2 267 62.9
BolC6t37738H Brassica oleracea HOM05D005636 ORTHO05D006912 2.4e-92 343.2 267 62.9
CAN.G585.52 Capsicum annuum HOM05D005636 ORTHO05D006912 3.1e-92 342.8 223 72.2
Thhalv10006084m.g Eutrema salsugineum HOM05D005636 ORTHO05D006912 9.1e-92 341.3 300 58.3
Nitab4.5_0005557g0010 Nicotiana tabacum HOM05D005636 ORTHO05D006912 9.1e-92 341.3 353 51.6
BraA07t30084Z Brassica rapa HOM05D005636 ORTHO05D006912 1.2e-91 340.9 305 57.4
ClCG09G022370 Citrullus lanatus HOM05D005636 ORTHO05D006912 1.2e-91 340.9 369 49.6
Sp5g04030 Schrenkiella parvula HOM05D005636 ORTHO05D006912 2.0e-91 340.1 299 58.2
Oeu020065.1 Olea europaea HOM05D005636 ORTHO05D006912 3.5e-91 339.3 359 49.9
Carub.0005s2561 Capsella rubella HOM05D005636 ORTHO05D006912 1.3e-90 337.4 292 58.6
QL08p044016 Quercus lobata HOM05D005636 ORTHO05D006912 1.7e-90 337.0 318 58.8
HanXRQChr13g0387431 Helianthus annuus HOM05D005636 ORTHO05D006912 2.9e-90 336.3 227 68.3
Migut.M00513 Erythranthe guttata HOM05D005636 ORTHO05D006912 3.8e-90 335.9 354 52.0
HanXRQChr12g0369761 Helianthus annuus HOM05D005636 ORTHO05D006912 5.0e-90 335.5 282 58.9
Peaxi162Scf00807g00219 Petunia axillaris HOM05D005636 ORTHO05D006912 6.5e-90 335.1 350 52.0
PGSC0003DMG400007795 Solanum tuberosum HOM05D005636 ORTHO05D006912 1.1e-89 334.3 350 51.4
ECA233G1750 Erigeron canadensis HOM05D005636 ORTHO05D006912 1.5e-89 334.0 224 68.3
THA.LOC104803221 Tarenaya hassleriana HOM05D005636 ORTHO05D006912 2.5e-89 333.2 286 58.7
Solyc12g011020.2 Solanum lycopersicum HOM05D005636 ORTHO05D006912 3.2e-89 332.8 294 57.8
Sopen12g006380 Solanum pennellii HOM05D005636 ORTHO05D006912 7.2e-89 331.6 294 57.5
Sed0000049 Sechium edule HOM05D005636 ORTHO05D006912 1.2e-88 330.9 359 49.9
CAN.G164.23 Capsicum annuum HOM05D005636 ORTHO05D006912 4.7e-88 328.9 363 50.7
TAR627G0895 Trochodendron aralioides HOM05D005636 ORTHO05D006912 1.0e-87 327.8 289 59.2
Peaxi162Scf00111g00031 Petunia axillaris HOM05D005636 ORTHO05D006912 3.0e-87 326.2 341 51.6
MSTRG.6754 Avicennia marina HOM05D005636 ORTHO05D006912 8.8e-87 324.7 341 54.3
Aqoxy1G01878 Aquilegia oxysepala HOM05D005636 ORTHO05D006912 1.7e-85 320.5 339 50.1
SalBow7G1748 Salvia bowleyana HOM05D005636 ORTHO05D006912 4.8e-85 318.9 221 67.0
arahy.Tifrunner.gnm1.ann1.LGDT7B Arachis hypogaea HOM05D005636 ORTHO05D006912 1.6e-83 313.9 166 88.6
Nn6g34386 Nelumbo nucifera HOM05D005636 ORTHO05D006912 2.0e-83 313.5 271 55.7
unitig_0.g2024 Utricularia gibba HOM05D005636 ORTHO05D006912 1.0e-82 311.2 224 63.4
Hma1.2p1_0888F.1_g232810 Hydrangea macrophylla HOM05D005636 ORTHO05D006912 8.5e-82 308.1 329 54.4
PSO541G3223 Papaver somniferum HOM05D005636 ORTHO05D006912 8.5e-82 308.1 241 58.9
PSO675G1578 Papaver somniferum HOM05D005636 ORTHO05D006912 2.5e-81 306.6 349 47.6
vmacro12452 Vaccinium macrocarpon HOM05D005636 ORTHO05D006912 2.5e-81 306.6 291 55.7
BcaC08g44945 Brassica carinata HOM05D005636 ORTHO05D006912 3.2e-81 306.2 267 58.1
Nitab4.5_0000446g0070 Nicotiana tabacum HOM05D005636 ORTHO05D006912 1.6e-80 303.9 351 46.4
TWI59G0166 Tripterygium wilfordii HOM05D005636 ORTHO05D006912 2.7e-80 303.1 329 49.8
CAN.G732.7 Capsicum annuum HOM05D005636 ORTHO05D006912 4.2e-73 279.3 196 68.4
ATR0763G116 Amborella trichopoda HOM05D005636 ORTHO05D006912 7.2e-73 278.5 215 60.0
SEGI_36348 Sequoiadendron giganteum HOM05D005636 ORTHO05D006912 8.0e-72 275.0 237 56.1
CDE08G0457 Ceratophyllum demersum HOM05D005636 ORTHO05D006912 1.8e-71 273.9 214 60.3
EL10Ac8g19235 Beta vulgaris HOM05D005636 ORTHO05D006912 5.2e-71 272.3 216 61.1
Sc14g0000770 Simmondsia chinensis HOM05D005636 ORTHO05D006912 1.3e-69 267.7 218 57.3
AUR62033992 Chenopodium quinoa HOM05D005636 ORTHO05D006912 4.1e-68 262.7 206 58.7
Haze_13492 Corylus avellana HOM05D005636 ORTHO05D006912 7.0e-68 261.9 238 58.0
Os01g0796500 Oryza sativa ssp. japonica HOM05D005636 ORTHO05D006912 2.0e-67 260.4 225 54.2
AagrBONN_evm.TU.Sc2ySwM_228.4819 Anthoceros agrestis HOM05D005636 ORTHO05D006912 1.3e-66 257.7 216 56.5
AUR62027489 Chenopodium quinoa HOM05D005636 ORTHO05D006912 3.8e-66 256.1 206 57.3
Ah.04g158730 Amaranthus hybridus HOM05D005636 ORTHO05D006912 8.6e-66 255.0 193 61.1
SGA_v2.0_scaffold70G23671 Striga asiatica HOM05D005636 ORTHO05D006912 2.5e-65 253.4 254 51.6
HPP92_010206 Vanilla planifolia HOM05D002349 ORTHO05D002464 8.9e-63 245.0 199 59.3
Actinidia32519 Actinidia chinensis HOM05D005636 ORTHO05D006912 4.4e-62 242.7 252 53.2
Mapoly0095s0041 Marchantia polymorpha HOM05D005636 ORTHO05D006912 1.3e-61 241.1 215 51.6
Pp3c4_17380 Physcomitrium patens HOM05D005636 ORTHO05D006912 2.2e-61 240.4 225 51.1
CANSAT64G2722 Cannabis sativa HOM05D005636 ORTHO05D006912 6.3e-61 238.8 151 76.2
SMO367G0867 Selaginella moellendorffii HOM05D005636 ORTHO05D006912 2.4e-60 236.9 216 53.2
MSTRG.14295 Avicennia marina HOM05D005636 ORTHO05D006912 7.0e-60 235.3 151 70.2
CBR_g66789 Chara braunii HOM05D005636 ORTHO05D006912 4.3e-49 199.5 182 51.6
Cre04.g219900 Chlamydomonas reinhardtii HOM05D005636 ORTHO05D006912 8.1e-48 195.3 206 45.1
Lj1A625T29 Lonicera japonica HOM05D005636 ORTHO05D006912 3.7e-45 186.4 248 43.5
DCAR_009796 Daucus carota HOM05D005636 ORTHO05D006912 9.9e-38 161.8 226 40.3
RcHm_v2.0_Chr2g0151251 Rosa chinensis HOM05D005636 ORTHO05D006912 1.1e-36 158.3 97 75.3
MCO16G670 Micromonas commoda HOM05D005636 ORTHO05D006912 1.2e-35 154.8 162 46.3
PRCOL_00003225 Prasinoderma coloniale HOM05D005636 ORTHO05D006912 2.1e-35 154.1 232 39.2
AagrBONN_evm.TU.Sc2ySwM_344.2384 Anthoceros agrestis HOM05D005636 ORTHO05D006912 6.2e-32 142.5 121 55.4
Zm00001eb150880 Zea mays HOM05D005636 ORTHO05D006912 9.6e-25 118.6 102 52.9
CAN.G44.13 Capsicum annuum HOM05D005636 ORTHO05D006912 5.3e-23 112.8 60 88.3
AagrBONN_evm.TU.Sc2ySwM_344.2381 Anthoceros agrestis HOM05D005636 ORTHO05D006912 1.6e-19 101.3 80 60.0
CAN.G1530.4 Capsicum annuum HOM05D005636 ORTHO05D017742 1.9e-17 94.4 58 75.9
VMungo0720G3119 Vigna mungo HOM05D000196 ORTHO05D001288 2.1e-08 64.3 38 81.6
Cfa023890 Carpinus fangiana HOM05D005636 ORTHO05D123467 1.8e-07 61.2 76 44.7
A04p02350 Brassica napus HOM05D005636 ORTHO05D006912 1.2e-06 58.5 53 54.7


User provided reference genes

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