Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.005G036800 Phaseolus vulgaris HOM05D004785 ORTHO05D005704 4.8e-244 847.4 437 100.0
VMungo1080G1418 Vigna mungo HOM05D004785 ORTHO05D005704 1.4e-232 809.3 437 95.0
Glyma.08G152600 Glycine max HOM05D004785 ORTHO05D005704 1.2e-218 763.1 442 91.2
Glyma.15G272000 Glycine max HOM05D004785 ORTHO05D005704 4.4e-205 718.0 438 86.5
Lj3g0000927 Lotus japonicus HOM05D004785 ORTHO05D005704 2.6e-197 692.2 438 82.2
TPR.G21739 Trifolium pratense HOM05D004785 ORTHO05D005704 3.4e-189 665.2 448 78.6
arahy.Tifrunner.gnm1.ann1.59DMFX Arachis hypogaea HOM05D004785 ORTHO05D005704 6.0e-186 654.4 444 78.8
Lj3g0006296 Lotus japonicus HOM05D004785 ORTHO05D005704 1.0e-185 653.7 442 79.6
Lalb_Chr19g0132061 Lupinus albus HOM05D004785 ORTHO05D005704 1.7e-185 652.9 441 77.8
arahy.Tifrunner.gnm1.ann1.M8XEBR Arachis hypogaea HOM05D004785 ORTHO05D005704 8.6e-185 650.6 444 78.8
Psat4g149360 Pisum sativum HOM05D004785 ORTHO05D005704 2.5e-184 649.0 447 76.5
Medtr8g036890 Medicago truncatula HOM05D004785 ORTHO05D005704 9.5e-184 647.1 447 76.5
Lalb_Chr01g0008111 Lupinus albus HOM05D004785 ORTHO05D005704 3.1e-182 642.1 445 77.3
CiPaw.13G002800 Carya illinoinensis HOM05D004785 ORTHO05D005704 6.4e-172 607.8 443 72.2
Thecc.01G414000 Theobroma cacao HOM05D004785 ORTHO05D005704 4.7e-167 591.7 445 71.0
Cc02_g27530 Coffea canephora HOM05D004785 ORTHO05D005704 2.4e-166 589.3 444 70.3
Cpa.g.sc234.14 Carica papaya HOM05D004785 ORTHO05D005704 6.9e-166 587.8 470 68.1
FAN10G3515 Fragaria x ananassa HOM05D004785 ORTHO05D005704 6.9e-166 587.8 441 70.7
RcHm_v2.0_Chr1g0314901 Rosa chinensis HOM05D004785 ORTHO05D005704 2.6e-165 585.9 441 70.1
FvH4_7g00680 Fragaria vesca HOM05D004785 ORTHO05D005704 3.4e-165 585.5 441 70.5
FAN06G5068 Fragaria x ananassa HOM05D004785 ORTHO05D005704 3.4e-165 585.5 441 70.5
Prupe.2G009600 Prunus persica HOM05D004785 ORTHO05D005704 1.3e-164 583.6 441 69.8
Potri.001G269900 Populus trichocarpa HOM05D004785 ORTHO05D005704 1.7e-164 583.2 445 69.9
FAN03G2451 Fragaria x ananassa HOM05D004785 ORTHO05D005704 2.2e-164 582.8 441 70.7
Ca_23868_v3 Cicer arietinum L. HOM05D004785 ORTHO05D005704 4.9e-164 581.6 442 71.3
FAN01G2822 Fragaria x ananassa HOM05D004785 ORTHO05D005704 4.9e-164 581.6 441 70.3
GSVIVG01032056001 Vitis vinifera HOM05D004785 ORTHO05D005704 1.1e-163 580.5 445 70.1
FAN01G2446 Fragaria x ananassa HOM05D004785 ORTHO05D005704 1.4e-163 580.1 441 70.1
Dinv43463 Davidia involucrata HOM05D004785 ORTHO05D005704 7.8e-162 574.3 456 67.5
QL04p005208 Quercus lobata HOM05D004785 ORTHO05D005704 1.7e-161 573.2 445 69.7
Duzib138G0206 Durio zibethinus HOM05D004785 ORTHO05D005704 2.8e-159 565.8 443 68.2
Dinv09378 Davidia involucrata HOM05D004785 ORTHO05D005704 1.8e-158 563.1 490 63.3
Gohir.D08G037900 Gossypium hirsutum HOM05D004785 ORTHO05D005704 3.1e-158 562.4 442 68.8
Gorai.004G035900 Gossypium raimondii HOM05D004785 ORTHO05D005704 1.2e-157 560.5 447 68.0
Nn7g36099 Nelumbo nucifera HOM05D004785 ORTHO05D005704 3.8e-156 555.4 443 67.0
Manes.10G146300 Manihot esculenta HOM05D004785 ORTHO05D005704 2.4e-155 552.7 442 66.1
TAR636G1066 Trochodendron aralioides HOM05D004785 ORTHO05D005704 3.9e-153 545.4 431 67.5
Potri.009G064600 Populus trichocarpa HOM05D004785 ORTHO05D005704 7.4e-152 541.2 445 65.8
CSS0016942 Camellia sinensis var. sinensis HOM05D004785 ORTHO05D005704 6.2e-151 538.1 443 65.9
CSS0030425 Camellia sinensis var. sinensis HOM05D004785 ORTHO05D005704 1.1e-150 537.3 443 65.9
Thhalv10010376m.g Eutrema salsugineum HOM05D004785 ORTHO05D005704 1.4e-150 537.0 452 63.9
Gohir.A08G027150 Gossypium hirsutum HOM05D004785 ORTHO05D005704 1.4e-150 537.0 443 67.0
MD07G1006500 Malus domestica HOM05D004785 ORTHO05D005704 1.4e-150 537.0 491 60.5
Rhsim01G0130900 Rhododendron simsii HOM05D004785 ORTHO05D005704 2.4e-150 536.2 440 66.1
THA.LOC104801982 Tarenaya hassleriana HOM05D004785 ORTHO05D005704 6.9e-150 534.6 449 65.5
CsaV3_7G031250 Cucumis sativus L. HOM05D004785 ORTHO05D005704 1.2e-149 533.9 451 66.3
Duzib268G1355 Durio zibethinus HOM05D004785 ORTHO05D005704 1.7e-148 530.0 444 64.4
Hma1.2p1_0845F.1_g227490 Hydrangea macrophylla HOM05D004785 ORTHO05D005704 2.2e-148 529.6 450 64.4
Sabra16G0165300 Salix brachista HOM05D004785 ORTHO05D005704 6.4e-148 528.1 461 64.0
MELO3C023531.2 Cucumis melo HOM05D004785 ORTHO05D005704 1.4e-147 526.9 450 66.7
TWI09G1360 Tripterygium wilfordii HOM05D004785 ORTHO05D005704 1.9e-147 526.6 463 63.9
CAN.G170.130 Capsicum annuum HOM05D004785 ORTHO05D005704 2.5e-147 526.2 441 64.2
Sed0027076 Sechium edule HOM05D004785 ORTHO05D005704 3.2e-147 525.8 446 65.0
MSTRG.20603 Avicennia marina HOM05D004785 ORTHO05D005704 1.2e-146 523.9 441 64.9
CANSAT11G0943 Cannabis sativa HOM05D004785 ORTHO05D005704 2.7e-146 522.7 441 65.5
Sp5g10160 Schrenkiella parvula HOM05D004785 ORTHO05D005704 3.5e-146 522.3 458 63.1
TAR633G2005 Trochodendron aralioides HOM05D004785 ORTHO05D005704 4.6e-146 521.9 444 64.0
Manes.07G003900 Manihot esculenta HOM05D004785 ORTHO05D005704 1.3e-145 520.4 447 63.8
AT3G52120 Arabidopsis thaliana HOM05D004785 ORTHO05D005704 3.0e-145 519.2 452 62.6
Carub.0005s1846 Capsella rubella HOM05D004785 ORTHO05D005704 3.9e-145 518.8 452 61.7
Sabra09G0047800 Salix brachista HOM05D004785 ORTHO05D005704 2.5e-144 516.2 445 64.0
Sopen01g033900 Solanum pennellii HOM05D004785 ORTHO05D005704 4.3e-144 515.4 443 63.4
PGSC0003DMG400025264 Solanum tuberosum HOM05D004785 ORTHO05D005704 7.4e-144 514.6 443 63.9
TWI73G0859 Tripterygium wilfordii HOM05D004785 ORTHO05D005704 7.4e-144 514.6 453 64.0
Solyc01g086890.3 Solanum lycopersicum HOM05D004785 ORTHO05D005704 4.8e-143 511.9 443 63.2
Nn2g15504 Nelumbo nucifera HOM05D004785 ORTHO05D005704 6.2e-143 511.5 442 64.7
Migut.N01482 Erythranthe guttata HOM05D004785 ORTHO05D005704 8.2e-143 511.1 441 63.0
Aa31LG10G7210 Aethionema arabicum HOM05D004785 ORTHO05D005704 4.5e-141 505.4 495 57.6
MBI04_g14260_MAGBIO Magnolia biondii HOM05D004785 ORTHO05D005704 7.6e-141 504.6 436 64.4
COL.COLO4_23900 Corchorus olitorius HOM05D004785 ORTHO05D005704 1.0e-140 504.2 440 61.8
SalBow4G2313 Salvia bowleyana HOM05D004785 ORTHO05D005704 1.3e-140 503.8 440 62.0
Aqoxy1G00294 Aquilegia oxysepala HOM05D004785 ORTHO05D005704 2.2e-140 503.1 440 64.1
Eucgr.G03395 Eucalyptus grandis HOM05D004785 ORTHO05D005704 2.9e-140 502.7 438 62.8
SalBow5G0866 Salvia bowleyana HOM05D004785 ORTHO05D005704 2.9e-140 502.7 439 62.6
SalBow5G5194 Salvia bowleyana HOM05D004785 ORTHO05D005704 2.9e-140 502.7 439 62.6
vmacro21177 Vaccinium macrocarpon HOM05D004785 ORTHO05D005704 6.5e-140 501.5 440 62.7
AL5G32690 Arabidopsis lyrata HOM05D004785 ORTHO05D005704 8.4e-140 501.1 473 59.4
Atru.chr11.2638 Acer truncatum HOM05D004785 ORTHO05D005704 1.1e-139 500.7 451 62.1
Actinidia20681 Actinidia chinensis HOM05D004785 ORTHO05D005704 1.4e-139 500.4 447 63.8
Ciclev10031609m.g Citrus clementina HOM05D004785 ORTHO05D005704 5.5e-139 498.4 448 62.5
C08p27390 Brassica napus HOM05D004785 ORTHO05D005704 3.5e-138 495.7 461 61.0
BolC8t50356H Brassica oleracea HOM05D004785 ORTHO05D005704 3.5e-138 495.7 455 60.2
Nitab4.5_0006850g0010 Nicotiana tabacum HOM05D004785 ORTHO05D005704 4.6e-138 495.4 430 62.8
A09p45180 Brassica napus HOM05D004785 ORTHO05D005704 5.1e-137 491.9 454 59.9
PGR044G1403 Punica granatum HOM05D004785 ORTHO05D005704 5.1e-137 491.9 441 62.1
BraA09t39981Z Brassica rapa HOM05D004785 ORTHO05D005704 2.5e-136 489.6 454 60.1
BcaNung06094 Brassica carinata HOM05D004785 ORTHO05D005704 4.8e-135 485.3 460 60.2
ECA246G0971 Erigeron canadensis HOM05D004785 ORTHO05D005704 6.3e-135 485.0 440 60.9
Hund03669 Selenicereus undatus HOM05D004785 ORTHO05D005704 9.0e-134 481.1 440 62.3
Sc15g0001680 Simmondsia chinensis HOM05D004785 ORTHO05D005704 2.9e-132 476.1 441 59.4
HanXRQChr15g0479141 Helianthus annuus HOM05D004785 ORTHO05D005704 3.8e-132 475.7 444 59.9
AUR62022266 Chenopodium quinoa HOM05D004785 ORTHO05D005704 9.4e-131 471.1 442 60.2
MBI01_g36433_MAGBIO Magnolia biondii HOM05D004785 ORTHO05D005704 5.1e-129 465.3 443 59.6
unitig_61.g26449 Utricularia gibba HOM05D004785 ORTHO05D005704 1.1e-126 457.6 430 59.8
Hund07648 Selenicereus undatus HOM05D004785 ORTHO05D005704 4.1e-126 455.7 440 58.2
PSO339G6673 Papaver somniferum HOM05D004785 ORTHO05D005704 2.0e-125 453.4 444 60.8
Lsat_1_v5_gn_4_68280 Lactuca sativa HOM05D004785 ORTHO05D005704 3.4e-125 452.6 433 61.0
PSO384G1867 Papaver somniferum HOM05D004785 ORTHO05D005704 1.7e-124 450.3 446 60.3
Actinidia21563 Actinidia chinensis HOM05D004785 ORTHO05D005704 1.6e-122 443.7 440 58.6
Medtr8g036260 Medicago truncatula HOM05D004785 ORTHO05D005704 1.6e-122 443.7 312 76.0
Peaxi162Scf00428g00096 Petunia axillaris HOM05D004785 ORTHO05D005704 1.6e-122 443.7 442 56.6
CDE10G0170 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 2.1e-122 443.4 443 56.2
SGA_v2.0_scaffold95G28788 Striga asiatica HOM05D004785 ORTHO05D005704 2.7e-122 443.0 465 56.3
EL10Ac9g21166 Beta vulgaris HOM05D004785 ORTHO05D005704 5.1e-121 438.7 431 57.8
AUR62031974 Chenopodium quinoa HOM05D004785 ORTHO05D005704 8.0e-114 414.8 442 55.0
CDE10G1291 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 1.0e-113 414.5 442 52.5
Mapoly0063s0041 Marchantia polymorpha HOM05D004785 ORTHO05D005704 1.1e-112 411.0 475 54.3
Sed0007108 Sechium edule HOM05D004785 ORTHO05D005704 3.3e-112 409.5 383 62.1
HPP92_022791 Vanilla planifolia HOM05D004785 ORTHO05D005704 5.7e-112 408.7 444 53.4
Lj7C568G16 Lonicera japonica HOM05D004785 ORTHO05D005704 4.8e-111 405.6 445 55.5
ATR0733G146 Amborella trichopoda HOM05D004785 ORTHO05D005704 1.2e-106 391.0 445 55.3
CDE04G1996 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 1.4e-105 387.5 382 56.3
Nitab4.5_0001542g0040 Nicotiana tabacum HOM05D004785 ORTHO05D005704 1.2e-104 384.4 294 67.7
Eucgr.J01259 Eucalyptus grandis HOM05D004785 ORTHO05D005704 9.1e-102 374.8 375 58.7
SEGI_00751 Sequoiadendron giganteum HOM05D004785 ORTHO05D005704 3.2e-99 366.3 438 52.7
Zm00001eb325220 Zea mays HOM05D004785 ORTHO05D005704 2.7e-98 363.2 440 51.6
Oeu014580.2 Olea europaea HOM05D004785 ORTHO05D005704 3.6e-98 362.8 380 55.0
MD02G1315400 Malus domestica HOM05D004785 ORTHO05D005704 4.9e-95 352.4 312 62.2
unitig_0.g1380 Utricularia gibba HOM05D004785 ORTHO05D005704 1.0e-92 344.7 306 61.4
SMO358G0717 Selaginella moellendorffii HOM05D004785 ORTHO05D005704 5.0e-92 342.4 451 48.3
DCAR_029653 Daucus carota HOM05D004785 ORTHO05D005704 8.6e-92 341.7 431 49.4
Pp3c7_22470 Physcomitrium patens HOM05D004785 ORTHO05D005704 3.3e-91 339.7 478 46.4
CBR_g19876 Chara braunii HOM05D004785 ORTHO05D005704 1.8e-86 323.9 380 50.5
Haze_03237 Corylus avellana HOM05D004785 ORTHO05D005704 1.1e-83 314.7 214 75.7
Gohir.D08G166700 Gossypium hirsutum HOM05D004785 ORTHO05D005704 1.1e-75 288.1 440 45.2
Gorai.004G174100 Gossypium raimondii HOM05D004785 ORTHO05D005704 1.2e-74 284.6 440 45.2
CARHR161860 Cardamine hirsuta HOM05D004785 ORTHO05D005704 4.3e-67 259.6 169 74.6
Gohir.A08G145800 Gossypium hirsutum HOM05D004785 ORTHO05D005704 3.0e-60 236.9 356 45.8
AagrBONN_evm.TU.Sc2ySwM_228.206 Anthoceros agrestis HOM05D004785 ORTHO05D005704 6.8e-57 225.7 321 46.4
SHI47607 Sapria himalayana HOM05D004785 ORTHO05D005704 5.8e-56 222.6 265 49.8
SHI47732 Sapria himalayana HOM05D004785 ORTHO05D005704 5.8e-56 222.6 265 49.8
Eucgr.B02099 Eucalyptus grandis HOM05D004785 ORTHO05D005704 5.6e-51 206.1 137 73.7
Pp3c11_4770 Physcomitrium patens HOM05D004785 ORTHO05D005704 8.1e-42 175.6 316 43.4
TAR623G0847 Trochodendron aralioides HOM05D004785 ORTHO05D005704 1.9e-38 164.5 194 49.5
Cre16.g686000 Chlamydomonas reinhardtii HOM05D004785 ORTHO05D005704 3.1e-33 147.1 440 30.0
Medtr8g036255 Medicago truncatula HOM05D004785 ORTHO05D005704 2.2e-31 141.0 74 87.8
Pp3c11_4670 Physcomitrium patens HOM05D004785 ORTHO05D005704 2.2e-31 141.0 264 42.0
Oeu006578.1 Olea europaea HOM05D004785 ORTHO05D005704 3.8e-31 140.2 180 49.4
BolC4t25664H Brassica oleracea HOM05D004785 ORTHO05D005704 6.5e-31 139.4 106 64.2
TAR623G0421 Trochodendron aralioides HOM05D004785 ORTHO05D005704 8.4e-31 139.0 91 75.8
CARHR161850 Cardamine hirsuta HOM05D004785 ORTHO05D005704 9.3e-30 135.6 124 59.7
Eucgr.A02263 Eucalyptus grandis HOM05D004785 ORTHO05D005704 2.3e-28 131.0 83 75.9
BcaC02g09278 Brassica carinata HOM05D004785 ORTHO05D005704 5.1e-28 129.8 131 51.9
C04p40800 Brassica napus HOM05D004785 ORTHO05D005704 5.1e-28 129.8 131 51.9
ClCG09G004330 Citrullus lanatus HOM05D004785 ORTHO05D005704 9.6e-27 125.6 69 84.1
A04p07240 Brassica napus HOM05D004785 ORTHO05D005704 2.4e-25 120.9 121 52.9
VMungo0720G2622 Vigna mungo HOM05D008589 ORTHO05D010715 3.1e-25 120.6 69 89.9
BraA04t16419Z Brassica rapa HOM05D004785 ORTHO05D005704 4.5e-24 116.7 86 67.4
DCAR_029646 Daucus carota HOM05D004785 ORTHO05D005704 1.0e-23 115.5 68 77.9
MCO15G372 Micromonas commoda HOM05D004785 ORTHO05D005704 1.0e-20 105.5 569 25.3
unitig_0.g1381 Utricularia gibba HOM05D004785 ORTHO05D005704 1.1e-14 85.5 91 52.7
AagrBONN_evm.TU.Sc2ySwM_228.74 Anthoceros agrestis HOM05D004785 ORTHO05D005704 4.2e-14 83.6 56 75.0
Os09g0281600 Oryza sativa ssp. japonica HOM05D004785 ORTHO05D005704 1.8e-09 68.2 130 39.2
Manes.09G181300 Manihot esculenta HOM05D005826 ORTHO05D004357 1.9e-06 58.2 130 33.8
Zm00001eb089260 Zea mays HOM05D005826 ORTHO05D004357 4.2e-06 57.0 125 30.4
Cre02.g105287 Chlamydomonas reinhardtii HOM05D004785 ORTHO05D008521 7.2e-06 56.2 69 44.9
Nn3g17475 Nelumbo nucifera HOM05D000874 ORTHO05D001267 7.2e-06 56.2 66 45.5


User provided reference genes

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