Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.005G032200 Phaseolus vulgaris HOM05D003838 ORTHO05D004444 4.7e-106 387.9 199 100.0
VMungo1080G0233 Vigna mungo HOM05D003838 ORTHO05D004444 1.9e-99 365.9 199 94.5
Glyma.11G081600 Glycine max HOM05D003838 ORTHO05D004444 1.4e-89 333.2 198 82.8
Ca_14316_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 9.6e-83 310.5 199 78.9
Medtr3g021420 Medicago truncatula HOM05D003838 ORTHO05D004444 6.9e-81 304.3 199 75.9
Medtr3g030930 Medicago truncatula HOM05D003838 ORTHO05D004444 2.6e-80 302.4 199 75.9
Medtr7g090650 Medicago truncatula HOM05D003838 ORTHO05D004444 7.6e-80 300.8 201 76.1
TPR.G3853 Trifolium pratense HOM05D003838 ORTHO05D004444 3.8e-79 298.5 199 77.4
arahy.Tifrunner.gnm1.ann1.0B6HPH Arachis hypogaea HOM05D003838 ORTHO05D004444 2.5e-78 295.8 199 72.9
arahy.Tifrunner.gnm1.ann1.536K79 Arachis hypogaea HOM05D003838 ORTHO05D004444 4.2e-78 295.0 199 72.9
Psat5g216120 Pisum sativum HOM05D003838 ORTHO05D004444 3.5e-77 292.0 199 72.9
Lj3g0022900 Lotus japonicus HOM05D003838 ORTHO05D004444 7.9e-77 290.8 199 75.4
Lalb_Chr10g0091981 Lupinus albus HOM05D003838 ORTHO05D004444 4.8e-74 281.6 199 70.4
Lalb_Chr17g0336351 Lupinus albus HOM05D003838 ORTHO05D004444 2.6e-72 275.8 199 68.3
arahy.Tifrunner.gnm1.ann1.JCJT2N Arachis hypogaea HOM05D000735 ORTHO05D004669 4.3e-67 258.5 193 64.2
Gorai.011G142700 Gossypium raimondii HOM05D003838 ORTHO05D004444 3.1e-65 252.3 199 62.3
Cfa015168 Carpinus fangiana HOM05D003838 ORTHO05D004444 9.1e-65 250.8 201 60.2
Gohir.A10G137200 Gossypium hirsutum HOM05D003838 ORTHO05D004444 2.6e-64 249.2 199 61.3
CSS0031035 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 5.9e-64 248.1 193 62.2
CsaV3_6G002030 Cucumis sativus L. HOM05D003838 ORTHO05D004444 2.2e-63 246.1 194 59.8
GSVIVG01022417001 Vitis vinifera HOM05D003838 ORTHO05D004444 2.9e-63 245.7 200 61.0
Thecc.04G179800 Theobroma cacao HOM05D003838 ORTHO05D004444 5.0e-63 245.0 192 61.5
Duzib212G0889 Durio zibethinus HOM05D003838 ORTHO05D004444 6.5e-63 244.6 193 61.1
Sed0023259 Sechium edule HOM05D003838 ORTHO05D004444 8.5e-63 244.2 194 60.8
CANSAT78G1384 Cannabis sativa HOM05D003838 ORTHO05D004444 1.1e-62 243.8 195 58.5
CSS0022226 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 1.4e-62 243.4 193 61.7
Hma1.2p1_0002F.1_g002170 Hydrangea macrophylla HOM05D003838 ORTHO05D004444 1.4e-62 243.4 198 60.1
Ciclev10022331m.g Citrus clementina HOM05D003838 ORTHO05D004444 1.9e-62 243.0 200 60.5
TAR376G0719 Trochodendron aralioides HOM05D003838 ORTHO05D004444 3.2e-62 242.3 194 63.4
MBI16_g18329_MAGBIO Magnolia biondii HOM05D003838 ORTHO05D004444 4.2e-62 241.9 197 59.4
Lj9P420T34 Lonicera japonica HOM05D003838 ORTHO05D004444 1.2e-61 240.4 198 59.6
Haze_01511 Corylus avellana HOM05D003838 ORTHO05D004444 2.7e-61 239.2 191 60.7
MD13G1208600 Malus domestica HOM05D003838 ORTHO05D004444 2.7e-61 239.2 199 58.8
CSS0030021 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 4.6e-61 238.4 193 60.6
Potri.017G030000 Populus trichocarpa HOM05D003838 ORTHO05D004444 2.3e-60 236.1 196 60.7
RcHm_v2.0_Chr4g0393311 Rosa chinensis HOM05D003838 ORTHO05D004444 3.0e-60 235.7 199 57.8
Ca_25969_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 3.9e-60 235.3 165 72.1
Prupe.3G140200 Prunus persica HOM05D003838 ORTHO05D004444 3.9e-60 235.3 198 58.1
Sabra17G0019500 Salix brachista HOM05D003838 ORTHO05D004444 6.7e-60 234.6 196 60.2
COL.COLO4_07664 Corchorus olitorius HOM05D003838 ORTHO05D004444 8.8e-60 234.2 200 59.0
ClCG08G004710 Citrullus lanatus HOM05D003838 ORTHO05D004444 1.1e-59 233.8 194 59.3
AUR62028681 Chenopodium quinoa HOM05D003838 ORTHO05D004444 3.3e-59 232.3 194 57.2
Manes.03G131800 Manihot esculenta HOM05D003838 ORTHO05D004444 3.3e-59 232.3 199 57.3
MELO3C008320.2 Cucumis melo HOM05D003838 ORTHO05D004444 4.4e-59 231.9 241 50.2
AUR62008103 Chenopodium quinoa HOM05D003838 ORTHO05D004444 7.4e-59 231.1 194 56.7
FvH4_4g03700 Fragaria vesca HOM05D003838 ORTHO05D004444 1.3e-58 230.3 199 54.8
MBI16_g18328_MAGBIO Magnolia biondii HOM05D003838 ORTHO05D004444 1.7e-58 229.9 197 56.3
Migut.I00010 Erythranthe guttata HOM05D003838 ORTHO05D004444 2.8e-58 229.2 195 56.9
arahy.Tifrunner.gnm1.ann1.IZ4F9K Arachis hypogaea HOM05D003838 ORTHO05D004444 1.1e-57 227.3 199 57.8
CSS0020761 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 1.1e-57 227.3 193 59.1
FAN17G3077 Fragaria x ananassa HOM05D003838 ORTHO05D004444 2.4e-57 226.1 199 54.3
PGR083G1767 Punica granatum HOM05D003838 ORTHO05D004444 6.9e-57 224.6 200 54.5
Ca_24199_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 9.1e-57 224.2 165 69.1
Cc07_g02090 Coffea canephora HOM05D003838 ORTHO05D004444 1.2e-56 223.8 197 55.3
PSO210G5426 Papaver somniferum HOM05D003838 ORTHO05D004444 1.5e-56 223.4 199 56.3
TWI38G0658 Tripterygium wilfordii HOM05D003838 ORTHO05D004444 2.0e-56 223.0 200 54.5
FAN12G0299 Fragaria x ananassa HOM05D000189 ORTHO05D000474 3.4e-56 222.2 190 54.7
EL10Ac5g10613 Beta vulgaris HOM05D003838 ORTHO05D004444 4.5e-56 221.9 194 56.2
Nn1g08615 Nelumbo nucifera HOM05D003838 ORTHO05D004444 4.5e-56 221.9 194 55.2
PSO063G7239 Papaver somniferum HOM05D003838 ORTHO05D004444 5.9e-56 221.5 199 54.8
MSTRG.23130 Avicennia marina HOM05D003838 ORTHO05D004444 7.7e-56 221.1 198 54.5
Prupe.1G032600 Prunus persica HOM05D003838 ORTHO05D004444 7.7e-56 221.1 199 56.3
Cc06_g03220 Coffea canephora HOM05D003838 ORTHO05D004444 1.0e-55 220.7 197 55.8
PSO782G5029 Papaver somniferum HOM05D003838 ORTHO05D004444 1.3e-55 220.3 199 54.8
RcHm_v2.0_Chr4g0390961 Rosa chinensis HOM05D003838 ORTHO05D004444 1.3e-55 220.3 196 54.6
TAR629G1244 Trochodendron aralioides HOM05D003838 ORTHO05D004444 1.3e-55 220.3 194 57.7
QL03p038958 Quercus lobata HOM05D003838 ORTHO05D004444 1.7e-55 219.9 191 55.5
Atru.chr3.1491 Acer truncatum HOM05D003838 ORTHO05D004444 2.2e-55 219.5 185 59.5
CDE06G0074 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 2.9e-55 219.2 194 56.2
Eucgr.A00080 Eucalyptus grandis HOM05D003838 ORTHO05D004444 2.9e-55 219.2 199 56.3
Ah.11g050950 Amaranthus hybridus HOM05D003838 ORTHO05D004444 1.4e-54 216.9 199 54.3
RcHm_v2.0_Chr4g0390901 Rosa chinensis HOM05D003838 ORTHO05D004444 1.4e-54 216.9 196 54.1
PGSC0003DMG400029841 Solanum tuberosum HOM05D003838 ORTHO05D004444 1.4e-54 216.9 197 54.8
vmacro23050 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 1.9e-54 216.5 194 53.6
Ca_24671_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 5.5e-54 214.9 150 70.0
Manes.15G070000 Manihot esculenta HOM05D003838 ORTHO05D004444 5.5e-54 214.9 199 54.3
DCAR_006535 Daucus carota HOM05D003838 ORTHO05D004444 9.4e-54 214.2 198 51.0
SGA_v2.0_scaffold90G27933 Striga asiatica HOM05D003838 ORTHO05D004444 1.6e-53 213.4 195 53.3
vmacro01004 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 2.1e-53 213.0 187 55.1
Rhsim05G0049100 Rhododendron simsii HOM05D003838 ORTHO05D004444 2.7e-53 212.6 188 54.8
Solyc10g079580.2 Solanum lycopersicum HOM05D003838 ORTHO05D004444 3.6e-53 212.2 197 53.8
SGA_v2.0_scaffold25G10841 Striga asiatica HOM05D003838 ORTHO05D004444 6.1e-53 211.5 195 53.8
Sc20g0000750 Simmondsia chinensis HOM05D003838 ORTHO05D004444 1.0e-52 210.7 199 52.3
Sopen10g030220 Solanum pennellii HOM05D003838 ORTHO05D004444 1.0e-52 210.7 197 53.3
Nitab4.5_0000515g0040 Nicotiana tabacum HOM05D003838 ORTHO05D004444 1.8e-52 209.9 197 53.3
Actinidia26441 Actinidia chinensis HOM05D003838 ORTHO05D004444 2.3e-52 209.5 193 53.4
Peaxi162Scf00201g00019 Petunia axillaris HOM05D003838 ORTHO05D004444 2.3e-52 209.5 198 54.0
Nitab4.5_0002162g0060 Nicotiana tabacum HOM05D003838 ORTHO05D004444 6.7e-52 208.0 197 54.8
QL10p048766 Quercus lobata HOM05D003838 ORTHO05D004444 8.8e-52 207.6 199 52.3
Hund09632 Selenicereus undatus HOM05D003838 ORTHO05D004444 1.1e-51 207.2 199 53.3
Peaxi162Scf00970g00146 Petunia axillaris HOM05D003838 ORTHO05D004444 2.0e-51 206.5 197 54.8
SalBow7G4199 Salvia bowleyana HOM05D003838 ORTHO05D004444 3.3e-51 205.7 196 54.6
RhsimUnG0118200 Rhododendron simsii HOM05D003838 ORTHO05D004444 5.7e-51 204.9 188 52.7
Rhsim09G0030300 Rhododendron simsii HOM05D003838 ORTHO05D004444 9.7e-51 204.1 188 52.1
Nitab4.5_0002208g0080 Nicotiana tabacum HOM05D003838 ORTHO05D004444 1.7e-50 203.4 197 53.3
HanXRQChr01g0021151 Helianthus annuus HOM05D003838 ORTHO05D004444 2.8e-50 202.6 199 52.8
HanXRQChr16g0516761 Helianthus annuus HOM05D003838 ORTHO05D004444 3.7e-50 202.2 197 54.3
SalBow5G3784 Salvia bowleyana HOM05D003838 ORTHO05D004444 6.3e-50 201.4 198 53.5
Nn5g28129 Nelumbo nucifera HOM05D003838 ORTHO05D004444 1.4e-49 200.3 196 54.1
HanXRQChr16g0504861 Helianthus annuus HOM05D003838 ORTHO05D004444 2.4e-49 199.5 199 52.8
HanXRQChr02g0057691 Helianthus annuus HOM05D003838 ORTHO05D004444 1.6e-48 196.8 199 50.8
Aqoxy7G02974 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 2.6e-48 196.1 199 50.3
HanXRQChr10g0305171 Helianthus annuus HOM05D003838 ORTHO05D004444 3.5e-48 195.7 199 51.8
Hund02940 Selenicereus undatus HOM05D003838 ORTHO05D004444 4.5e-48 195.3 193 51.8
AUR62024648 Chenopodium quinoa HOM05D004658 ORTHO05D005927 7.7e-48 194.5 194 50.0
CDE02G1933 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 1.0e-47 194.1 193 49.2
ECA246G3227 Erigeron canadensis HOM05D003838 ORTHO05D004444 1.7e-47 193.4 194 54.6
HanXRQChr14g0439271 Helianthus annuus HOM05D003838 ORTHO05D004444 2.2e-47 193.0 199 50.3
HanXRQChr16g0517051 Helianthus annuus HOM05D003838 ORTHO05D004444 2.9e-47 192.6 200 52.0
Aqoxy7G02681 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 3.8e-47 192.2 194 47.9
RcHm_v2.0_Chr4g0390871 Rosa chinensis HOM05D003838 ORTHO05D004444 3.8e-47 192.2 179 52.0
PGSC0003DMG400002948 Solanum tuberosum HOM05D003838 ORTHO05D004444 5.0e-47 191.8 193 51.3
CiPaw.01G100400 Carya illinoinensis HOM05D003838 ORTHO05D004444 1.5e-46 190.3 147 59.9
THA.LOC104826203 Tarenaya hassleriana HOM05D003838 ORTHO05D004444 1.5e-46 190.3 192 50.5
Lsat_1_v5_gn_2_85780 Lactuca sativa HOM05D003838 ORTHO05D004444 1.9e-46 189.9 174 55.7
AUR62011801 Chenopodium quinoa HOM05D003838 ORTHO05D004444 4.2e-46 188.7 195 50.3
ECA238G0498 Erigeron canadensis HOM05D003838 ORTHO05D004444 4.2e-46 188.7 193 52.3
Carub.0001s0533 Capsella rubella HOM05D003838 ORTHO05D004444 7.2e-46 188.0 187 49.7
Gohir.D10G129400 Gossypium hirsutum HOM05D003838 ORTHO05D004444 9.4e-46 187.6 150 59.3
Nitab4.5_0024579g0010 Nicotiana tabacum HOM05D003838 ORTHO05D004444 9.4e-46 187.6 197 49.2
BolC5t29205H Brassica oleracea HOM05D003838 ORTHO05D004444 1.2e-45 187.2 192 47.9
CARHR005500 Cardamine hirsuta HOM05D003838 ORTHO05D004444 1.2e-45 187.2 186 48.4
FAN12G3313 Fragaria x ananassa HOM05D003838 ORTHO05D004444 1.2e-45 187.2 195 49.2
ATR0665G504 Amborella trichopoda HOM05D003838 ORTHO05D004444 1.6e-45 186.8 197 49.7
BraA10t42729Z Brassica rapa HOM05D003838 ORTHO05D004444 1.6e-45 186.8 192 48.4
Aa31LG1G8370 Aethionema arabicum HOM05D003838 ORTHO05D004444 2.1e-45 186.4 188 48.4
A10p04640 Brassica napus HOM05D003838 ORTHO05D004444 2.7e-45 186.0 192 47.9
C05p04300 Brassica napus HOM05D003838 ORTHO05D004444 2.7e-45 186.0 192 47.4
Sp1g04800 Schrenkiella parvula HOM05D003838 ORTHO05D004444 4.7e-45 185.3 192 47.4
Aqoxy285s002 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 6.1e-45 184.9 179 52.0
FvH4_4g02890 Fragaria vesca HOM05D003838 ORTHO05D004444 8.0e-45 184.5 195 48.7
HanXRQChr12g0355781 Helianthus annuus HOM05D003838 ORTHO05D004444 1.0e-44 184.1 199 50.3
HanXRQChr02g0057701 Helianthus annuus HOM05D003838 ORTHO05D004444 1.4e-44 183.7 197 50.3
AT1G05970 Arabidopsis thaliana HOM05D003838 ORTHO05D004444 2.3e-44 183.0 186 49.5
AL1G15920 Arabidopsis lyrata HOM05D003838 ORTHO05D004444 4.0e-44 182.2 186 48.4
SEGI_03408 Sequoiadendron giganteum HOM05D003838 ORTHO05D004444 4.0e-44 182.2 186 48.9
Thhalv10008811m.g Eutrema salsugineum HOM05D003838 ORTHO05D004444 1.5e-43 180.3 194 46.9
Oeu016385.1 Olea europaea HOM05D003838 ORTHO05D004444 2.6e-43 179.5 174 48.3
Lj5P157T23 Lonicera japonica HOM05D003838 ORTHO05D004444 5.7e-43 178.3 147 55.8
CARHR038440 Cardamine hirsuta HOM05D003838 ORTHO05D004444 2.4e-41 172.9 163 51.5
Zm00001eb304590 Zea mays HOM05D003838 ORTHO05D004444 5.3e-41 171.8 190 44.7
Migut.L01638 Erythranthe guttata HOM05D003838 ORTHO05D004444 9.1e-41 171.0 190 44.7
Os07g0256200 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 4.5e-40 168.7 190 45.8
Sopen04g016270 Solanum pennellii HOM05D003838 ORTHO05D004444 4.5e-40 168.7 164 53.0
BcaC05g24315 Brassica carinata HOM05D003838 ORTHO05D004444 5.0e-39 165.2 192 44.8
EL10As5g23534 Beta vulgaris HOM05D003838 ORTHO05D004444 1.1e-38 164.1 191 44.5
unitig_750.g28470 Utricularia gibba HOM05D003838 ORTHO05D004444 2.5e-38 162.9 176 46.0
SEGI_13821 Sequoiadendron giganteum HOM05D003838 ORTHO05D004444 7.2e-38 161.4 193 43.0
Os09g0111800 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 2.7e-37 159.5 198 43.4
Os04g0689700 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 1.5e-35 153.7 198 41.9
CDE08G0678 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 3.4e-35 152.5 125 57.6
PSO832G2359 Papaver somniferum HOM05D003838 ORTHO05D004444 9.8e-35 151.0 199 43.7
Sp1g04950 Schrenkiella parvula HOM05D003838 ORTHO05D004444 1.7e-34 150.2 195 42.1
HPP92_001929 Vanilla planifolia HOM05D003838 ORTHO05D004444 5.4e-33 145.2 199 41.7
vmacro04174 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 2.0e-32 143.3 165 47.3
Os02g0669700 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 5.9e-32 141.7 200 42.0
Zm00001eb076930 Zea mays HOM05D003838 ORTHO05D004444 7.7e-32 141.4 197 39.1
Zm00001eb076310 Zea mays HOM05D003838 ORTHO05D004444 2.9e-31 139.4 197 39.1
ATR0665G008 Amborella trichopoda HOM05D003838 ORTHO05D004444 6.5e-31 138.3 144 47.2
FAN22G1473 Fragaria x ananassa HOM05D003838 ORTHO05D004444 2.5e-30 136.3 130 50.8
Cpa.g.sc71.4 Carica papaya HOM05D003838 ORTHO05D004444 4.7e-29 132.1 126 51.6
Rhsim12G0057800 Rhododendron simsii HOM05D003838 ORTHO05D004444 4.7e-29 132.1 153 45.8
RcHm_v2.0_Chr4g0390851 Rosa chinensis HOM05D003838 ORTHO05D004444 2.4e-25 119.8 114 50.0
MD16G1210800 Malus domestica HOM05D003838 ORTHO05D004444 6.1e-21 105.1 114 48.2
CDE08G1258 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 1.4e-20 104.0 195 35.4
Rhsim12G0009000 Rhododendron simsii HOM05D003838 ORTHO05D004444 3.2e-17 92.8 191 31.4
Peaxi162Scf01029g00016 Petunia axillaris HOM05D003838 ORTHO05D004444 9.2e-17 91.3 198 33.8
Actinidia06873 Actinidia chinensis HOM05D003838 ORTHO05D004444 5.0e-15 85.5 185 35.1
FAN17G0891 Fragaria x ananassa HOM05D003838 ORTHO05D004444 5.6e-14 82.0 105 44.8
CBR_g15988 Chara braunii HOM05D003838 ORTHO05D004444 6.2e-13 78.6 203 27.1
CBR_g31525 Chara braunii HOM05D003838 ORTHO05D004444 6.2e-13 78.6 200 28.0
Sopen04g016210 Solanum pennellii HOM05D003838 ORTHO05D004444 8.0e-13 78.2 84 46.4
Solyc04g040053.1 Solanum lycopersicum HOM05D003838 ORTHO05D004444 3.1e-12 76.3 166 32.5
Mapoly0037s0121 Marchantia polymorpha HOM05D003838 ORTHO05D004444 2.6e-11 73.2 177 31.1
Solyc04g040010.3 Solanum lycopersicum HOM05D003838 ORTHO05D004444 3.2e-09 66.2 76 42.1
FvH4_4g02900 Fragaria vesca HOM05D003838 ORTHO05D004444 1.7e-07 60.5 107 37.4
FAN12G1760 Fragaria x ananassa HOM05D003838 ORTHO05D004444 5.0e-07 58.9 90 38.9


User provided reference genes

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