Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.005G018800 Phaseolus vulgaris HOM05D007266 ORTHO05D005982 1.0e-207 726.5 359 100.0
VMungo1080G1603 Vigna mungo HOM05D007266 ORTHO05D005982 9.9e-163 577.0 359 82.7
Glyma.04G133400 Glycine max HOM05D007266 ORTHO05D005982 1.5e-134 483.4 373 70.2
arahy.Tifrunner.gnm1.ann1.E0LNSJ Arachis hypogaea HOM05D007266 ORTHO05D005982 5.6e-89 332.0 392 50.3
Glyma.11G158200 Glycine max HOM05D007266 ORTHO05D005982 1.2e-88 330.9 279 67.7
arahy.Tifrunner.gnm1.ann1.5HCQ47 Arachis hypogaea HOM05D007266 ORTHO05D005982 1.1e-87 327.8 403 49.1
Glyma.13G191900 Glycine max HOM05D007266 ORTHO05D005982 1.8e-71 273.9 366 47.0
Glyma.15G229400 Glycine max HOM05D007266 ORTHO05D005982 2.1e-67 260.4 317 49.2
Phvul.011G200200 Phaseolus vulgaris HOM05D007266 ORTHO05D005982 5.3e-63 245.7 318 47.8
Ca_24011_v3 Cicer arietinum L. HOM05D007266 ORTHO05D005982 9.9e-62 241.5 301 47.8
Ca_24018_v3 Cicer arietinum L. HOM05D007266 ORTHO05D005982 9.9e-62 241.5 301 47.8
Lalb_Chr19g0132921 Lupinus albus HOM05D007266 ORTHO05D005982 4.9e-61 239.2 317 47.0
VMungo1127G1999 Vigna mungo HOM05D007266 ORTHO05D005982 4.6e-59 232.6 360 44.2
Lj3g0024959 Lotus japonicus HOM05D007266 ORTHO05D005982 3.0e-58 229.9 363 43.3
Lj3g0005568 Lotus japonicus HOM05D007266 ORTHO05D005982 8.7e-58 228.4 243 56.4
Psat4g144600 Pisum sativum HOM05D007266 ORTHO05D005982 4.3e-57 226.1 303 44.9
Medtr8g040640 Medicago truncatula HOM05D007266 ORTHO05D005982 6.9e-55 218.8 299 43.8
TPR.G8521 Trifolium pratense HOM05D007266 ORTHO05D005982 7.1e-52 208.8 305 44.9
arahy.Tifrunner.gnm1.ann1.78H5KP Arachis hypogaea HOM05D007266 ORTHO05D005982 2.1e-43 180.6 318 38.7
CiPaw.14G009500 Carya illinoinensis HOM05D007266 ORTHO05D005982 2.1e-43 180.6 345 36.2
arahy.Tifrunner.gnm1.ann1.IJY9PN Arachis hypogaea HOM05D007266 ORTHO05D005982 3.9e-42 176.4 312 38.5
Cfa010951 Carpinus fangiana HOM05D007266 ORTHO05D005982 2.1e-40 170.6 352 34.1
FAN03G0408 Fragaria x ananassa HOM05D007266 ORTHO05D005982 4.0e-39 166.4 416 33.2
Haze_02992 Corylus avellana HOM05D007266 ORTHO05D005982 1.5e-38 164.5 368 32.6
Thecc.10G142300 Theobroma cacao HOM05D007266 ORTHO05D005982 2.0e-38 164.1 349 33.5
Sabra01G0022900 Salix brachista HOM05D007266 ORTHO05D005982 1.0e-37 161.8 354 33.6
FAN06G1886 Fragaria x ananassa HOM05D007266 ORTHO05D005982 2.2e-37 160.6 413 32.0
FvH4_7g03880 Fragaria vesca HOM05D007266 ORTHO05D005982 1.1e-36 158.3 415 32.8
FAN01G0656 Fragaria x ananassa HOM05D007266 ORTHO05D005982 1.1e-36 158.3 416 32.9
CiPaw.06G056200 Carya illinoinensis HOM05D007266 ORTHO05D005982 1.2e-35 154.8 360 32.2
Prupe.2G043600 Prunus persica HOM05D007266 ORTHO05D005982 3.5e-35 153.3 385 34.3
COL.COLO4_06637 Corchorus olitorius HOM05D007266 ORTHO05D005982 4.6e-35 152.9 375 33.1
Manes.04G156300 Manihot esculenta HOM05D007266 ORTHO05D005982 4.6e-35 152.9 397 33.0
FAN10G1696 Fragaria x ananassa HOM05D007266 ORTHO05D005982 1.0e-34 151.8 414 31.9
RcHm_v2.0_Chr1g0327331 Rosa chinensis HOM05D007266 ORTHO05D005982 3.9e-34 149.8 353 33.1
MD07G1043900 Malus domestica HOM05D007266 ORTHO05D005982 5.1e-34 149.4 385 33.8
TWI15G1169 Tripterygium wilfordii HOM05D007266 ORTHO05D005982 1.1e-33 148.3 389 29.8
Manes.11G007700 Manihot esculenta HOM05D007266 ORTHO05D005982 1.9e-33 147.5 329 33.7
Atru.chr12.1311 Acer truncatum HOM05D007266 ORTHO05D005982 4.3e-33 146.4 379 31.9
Duzib128G0414 Durio zibethinus HOM05D007266 ORTHO05D005982 2.4e-31 140.6 350 32.6
Potri.001G031800 Populus trichocarpa HOM05D007266 ORTHO05D005982 6.9e-31 139.0 292 34.9
Lalb_Chr01g0007431 Lupinus albus HOM05D007266 ORTHO05D005982 1.4e-28 131.3 190 44.7
Gorai.009G299100 Gossypium raimondii HOM05D007266 ORTHO05D005982 2.5e-28 130.6 301 32.6
Dinv11235 Davidia involucrata HOM05D007266 ORTHO05D005982 7.2e-28 129.0 360 33.3
TAR633G1403 Trochodendron aralioides HOM05D007266 ORTHO05D005982 1.6e-27 127.9 355 32.4
Actinidia01519 Actinidia chinensis HOM05D007266 ORTHO05D005982 1.8e-26 124.4 377 28.9
Actinidia01687 Actinidia chinensis HOM05D000639 ORTHO05D007519 1.8e-26 124.4 381 30.2
vmacro21145 Vaccinium macrocarpon HOM05D007266 ORTHO05D005982 1.8e-26 124.4 376 28.2
Rhsim01G0124500 Rhododendron simsii HOM05D007266 ORTHO05D005982 4.3e-25 119.8 326 30.4
Sabra03G0144500 Salix brachista HOM05D007266 ORTHO05D005982 3.7e-24 116.7 449 26.5
TAR369G0213 Trochodendron aralioides HOM05D007266 ORTHO05D005982 3.7e-24 116.7 378 28.6
Gohir.A05G283500 Gossypium hirsutum HOM05D007266 ORTHO05D005982 4.8e-24 116.3 301 30.9
TWI63G1068 Tripterygium wilfordii HOM05D007266 ORTHO05D005982 4.8e-24 116.3 279 31.2
Lalb_Chr01g0007421 Lupinus albus HOM05D007266 ORTHO05D005982 3.1e-23 113.6 126 50.0
Eucgr.J00068 Eucalyptus grandis HOM05D007266 ORTHO05D005982 9.1e-23 112.1 363 28.4
TWI38G2050 Tripterygium wilfordii HOM05D007266 ORTHO05D005982 5.9e-22 109.4 339 30.7
Oeu058685.1 Olea europaea HOM05D007266 ORTHO05D005982 9.4e-20 102.1 315 30.5
DCAR_029711 Daucus carota HOM05D007266 ORTHO05D005982 3.6e-19 100.1 333 30.9
Hund13391 Selenicereus undatus HOM05D007266 ORTHO05D005982 6.1e-19 99.4 410 28.5
QL04p021455 Quercus lobata HOM05D007266 ORTHO05D005982 7.9e-19 99.0 163 39.3
QL07p029255 Quercus lobata HOM05D007266 ORTHO05D005982 7.9e-19 99.0 163 39.3
PGR044G2654 Punica granatum HOM05D007266 ORTHO05D005982 6.7e-18 95.9 366 29.0
Oeu013066.1 Olea europaea HOM05D007266 ORTHO05D005982 2.6e-17 94.0 365 27.4
THA.LOC104799328 Tarenaya hassleriana HOM05D008873 ORTHO05D005982 3.3e-17 93.6 314 27.7
FAN03G2213 Fragaria x ananassa HOM05D007266 ORTHO05D005982 4.4e-17 93.2 191 36.6
Sp6g35890 Schrenkiella parvula HOM05D008873 ORTHO05D005982 1.8e-15 87.8 299 28.1
Hma1.2p1_0837F.1_g226230 Hydrangea macrophylla HOM05D007266 ORTHO05D005982 2.4e-15 87.4 398 28.6
GSVIVG01036604001 Vitis vinifera HOM05D007266 ORTHO05D005982 2.4e-15 87.4 238 31.5
Carub.0006s0591 Capsella rubella HOM05D008873 ORTHO05D005982 9.1e-15 85.5 305 27.5
SalBow5G4193 Salvia bowleyana HOM05D007266 ORTHO05D005982 9.1e-15 85.5 293 29.0
C09p69120 Brassica napus HOM05D008873 ORTHO05D005982 1.2e-14 85.1 313 27.5
Migut.B01189 Erythranthe guttata HOM05D007266 ORTHO05D005982 1.2e-14 85.1 343 24.8
AT3G12320 Arabidopsis thaliana HOM05D008873 ORTHO05D005982 1.5e-14 84.7 308 28.2
AL6G17140 Arabidopsis lyrata HOM05D008873 ORTHO05D005982 2.6e-14 84.0 301 26.6
Sp3g10530 Schrenkiella parvula HOM05D008873 ORTHO05D005982 2.6e-14 84.0 300 28.0
Potri.003G193800 Populus trichocarpa HOM05D007266 ORTHO05D005982 3.5e-14 83.6 193 35.2
Thhalv10014291m.g Eutrema salsugineum HOM05D008873 ORTHO05D005982 5.9e-14 82.8 314 29.0
AL3G23970 Arabidopsis lyrata HOM05D008873 ORTHO05D005982 7.7e-14 82.4 314 26.4
BolC9t59656H Brassica oleracea HOM05D008873 ORTHO05D005982 7.7e-14 82.4 313 27.2
CARHR086860 Cardamine hirsuta HOM05D008873 ORTHO05D005982 7.7e-14 82.4 310 27.4
Lsat_1_v5_gn_1_118261 Lactuca sativa HOM05D007266 ORTHO05D005982 7.7e-14 82.4 266 27.8
QL04p021458 Quercus lobata HOM05D007266 ORTHO05D005982 1.0e-13 82.0 156 35.3
QL07p029253 Quercus lobata HOM05D007266 ORTHO05D005982 1.0e-13 82.0 156 35.3
Ah.12g065060 Amaranthus hybridus HOM05D007266 ORTHO05D005982 1.3e-13 81.6 351 27.6
EL10Ac2g02761 Beta vulgaris HOM05D007266 ORTHO05D005982 1.3e-13 81.6 393 27.0
Thhalv10021314m.g Eutrema salsugineum HOM05D008873 ORTHO05D005982 1.3e-13 81.6 305 27.9
Aa31LG3G6540 Aethionema arabicum HOM05D008873 ORTHO05D005982 1.7e-13 81.3 315 28.9
A05p37060 Brassica napus HOM05D008873 ORTHO05D005982 5.0e-13 79.7 307 26.7
AUR62031740 Chenopodium quinoa HOM05D007266 ORTHO05D005982 5.0e-13 79.7 276 28.6
BcaB04g21084 Brassica carinata HOM05D008873 ORTHO05D005982 8.5e-13 79.0 311 28.0
BcaB04g21086 Brassica carinata HOM05D008873 ORTHO05D005982 8.5e-13 79.0 311 28.0
Carub.0003s1168 Capsella rubella HOM05D008873 ORTHO05D005982 8.5e-13 79.0 312 27.2
Nitab4.5_0002838g0050 Nicotiana tabacum HOM05D007266 ORTHO05D005982 1.5e-12 78.2 331 26.6
A10p28780 Brassica napus HOM05D008873 ORTHO05D005982 2.5e-12 77.4 310 26.8
BcaC01g04052 Brassica carinata HOM05D008873 ORTHO05D005982 3.2e-12 77.0 306 26.1
C03p45590 Brassica napus HOM05D008873 ORTHO05D005982 3.2e-12 77.0 306 26.1
BolC3t16836H Brassica oleracea HOM05D008873 ORTHO05D005982 3.2e-12 77.0 306 26.1
Cpa.g.sc169.34 Carica papaya HOM05D007266 ORTHO05D005982 5.5e-12 76.3 154 36.4
BraA10t44925Z Brassica rapa HOM05D008873 ORTHO05D005982 7.2e-12 75.9 310 26.8
BcaNung04207 Brassica carinata HOM05D008873 ORTHO05D005982 9.4e-12 75.5 319 26.6
Nitab4.5_0004168g0140 Nicotiana tabacum HOM05D007266 ORTHO05D005982 1.2e-11 75.1 334 28.4
C05p55490 Brassica napus HOM05D008873 ORTHO05D005982 2.7e-11 73.9 249 28.9
Nn7g36823 Nelumbo nucifera HOM05D007266 ORTHO05D005982 2.7e-11 73.9 344 26.5
BcaC06g32527 Brassica carinata HOM05D008873 ORTHO05D005982 4.7e-11 73.2 309 25.6
Ciclev10001901m.g Citrus clementina HOM05D007266 ORTHO05D005982 4.7e-11 73.2 173 32.4
Gohir.D05G284500 Gossypium hirsutum HOM05D007266 ORTHO05D005982 4.7e-11 73.2 102 41.2
Ah.10g030010 Amaranthus hybridus HOM05D007266 ORTHO05D005982 1.0e-10 72.0 359 25.1
A03p37600 Brassica napus HOM05D008873 ORTHO05D005982 1.0e-10 72.0 247 28.3
BraA03t12914Z Brassica rapa HOM05D008873 ORTHO05D005982 1.8e-10 71.2 247 28.3
BraA05t22503Z Brassica rapa HOM05D008873 ORTHO05D005982 1.8e-10 71.2 133 33.8
BcaC05g29270 Brassica carinata HOM05D008873 ORTHO05D005982 3.0e-10 70.5 249 28.5
BolC5t34215H Brassica oleracea HOM05D008873 ORTHO05D005982 3.0e-10 70.5 133 34.6
AT5G06980 Arabidopsis thaliana HOM05D008873 ORTHO05D005982 5.2e-10 69.7 245 25.7
ECA248G2125 Erigeron canadensis HOM05D007266 ORTHO05D005982 2.0e-09 67.8 231 28.6
BcaB01g05709 Brassica carinata HOM05D008873 ORTHO05D005982 7.4e-09 65.9 294 23.5
CARHR206160 Cardamine hirsuta HOM05D008873 ORTHO05D005982 1.3e-08 65.1 104 38.5
CSS0040931 Camellia sinensis var. sinensis HOM05D007266 ORTHO05D005982 1.7e-08 64.7 145 29.0
HanXRQChr05g0146291 Helianthus annuus HOM05D007266 ORTHO05D005982 1.7e-08 64.7 291 24.7
HanXRQChr11g0341241 Helianthus annuus HOM05D007266 ORTHO05D005982 2.2e-08 64.3 132 34.1
Lj9C658G11 Lonicera japonica HOM05D007266 ORTHO05D005982 2.2e-08 64.3 176 34.1
PGSC0003DMG402003286 Solanum tuberosum HOM05D007266 ORTHO05D005982 4.8e-08 63.2 323 27.9
Aqoxy1G00397_Aqoxy1G00398 Aquilegia oxysepala HOM05D007266 ORTHO05D005982 6.3e-08 62.8 132 37.9
CANSAT56G2989 Cannabis sativa HOM05D007266 ORTHO05D005982 1.4e-07 61.6 346 29.5
Sopen01g040350 Solanum pennellii HOM05D007266 ORTHO05D005982 1.4e-07 61.6 338 25.4
BcaB04g18684 Brassica carinata HOM05D008873 ORTHO05D005982 2.4e-07 60.8 105 37.1
A06p30890 Brassica napus HOM05D003662 ORTHO05D001824 3.1e-07 60.5 127 37.8
Aa31LG1G17760 Aethionema arabicum HOM05D003662 ORTHO05D001824 4.1e-07 60.1 158 32.3
Sp2g27230 Schrenkiella parvula HOM05D003662 ORTHO05D001824 7.0e-07 59.3 159 33.3
TAR623G0806 Trochodendron aralioides HOM05D007266 ORTHO05D005982 9.1e-07 58.9 122 36.1
CAN.G134.28 Capsicum annuum HOM05D005009 ORTHO05D006203 1.2e-06 58.5 361 23.8
BcaB07g29728 Brassica carinata HOM05D003662 ORTHO05D001824 2.6e-06 57.4 152 31.6
Nn1g05340 Nelumbo nucifera HOM05D003662 ORTHO05D001824 2.6e-06 57.4 133 32.3
AUR62032625 Chenopodium quinoa HOM05D007266 ORTHO05D005982 3.5e-06 57.0 172 28.5
Dinv32008 Davidia involucrata HOM05D007266 ORTHO05D005982 3.5e-06 57.0 132 31.8
Solyc01g096630.3 Solanum lycopersicum HOM05D007266 ORTHO05D005982 3.5e-06 57.0 98 37.8
BcaB02g09780 Brassica carinata HOM05D003662 ORTHO05D001824 4.5e-06 56.6 140 35.0
CDE12G0772 Ceratophyllum demersum HOM05D003662 ORTHO05D001824 4.5e-06 56.6 177 29.4
Sc11g0006320 Simmondsia chinensis HOM05D007266 ORTHO05D005982 4.5e-06 56.6 181 28.2
arahy.Tifrunner.gnm1.ann1.9W20Y7 Arachis hypogaea HOM05D003662 ORTHO05D001824 5.9e-06 56.2 194 30.9
CAN.G523.76 Capsicum annuum HOM05D003662 ORTHO05D001824 5.9e-06 56.2 124 36.3
Aa31sc25G30 Aethionema arabicum HOM05D008873 ORTHO05D005982 7.7e-06 55.8 99 35.4
ECA234G0654 Erigeron canadensis HOM05D000867 ORTHO05D000864 7.7e-06 55.8 119 37.8


User provided reference genes

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