Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.005G006500 Phaseolus vulgaris HOM05D004098 ORTHO05D005215 0.0e+00 1273.1 734 100.0
VMungo1080G0600 Vigna mungo HOM05D004098 ORTHO05D005215 0.0e+00 1215.7 736 96.1
Glyma.04G116700 Glycine max HOM05D004098 ORTHO05D005215 0.0e+00 1156.4 739 92.4
Glyma.06G320100 Glycine max HOM05D004098 ORTHO05D005215 0.0e+00 1154.8 737 92.0
Lj3g0001916 Lotus japonicus HOM05D004098 ORTHO05D005215 1.2e-303 1046.2 745 85.0
Lalb_Chr15g0079811 Lupinus albus HOM05D004098 ORTHO05D005215 3.2e-293 1011.5 753 81.9
arahy.Tifrunner.gnm1.ann1.FI1VU9 Arachis hypogaea HOM05D004098 ORTHO05D005215 5.5e-293 1010.7 750 82.4
arahy.Tifrunner.gnm1.ann1.36GALV Arachis hypogaea HOM05D004098 ORTHO05D005215 8.8e-291 1003.4 772 80.2
Lalb_Chr18g0048751 Lupinus albus HOM05D004098 ORTHO05D005215 7.2e-285 983.8 753 80.6
Medtr3g009230 Medicago truncatula HOM05D004098 ORTHO05D005215 2.0e-282 975.7 747 81.4
Psat5g230760 Pisum sativum HOM05D004098 ORTHO05D005215 2.7e-279 965.3 747 80.1
Ca_14121_v3 Cicer arietinum L. HOM05D004098 ORTHO05D005215 1.7e-278 962.6 747 80.5
TPR.G16705 Trifolium pratense HOM05D004098 ORTHO05D005215 1.1e-272 943.3 633 78.2
Manes.01G008000 Manihot esculenta HOM05D004098 ORTHO05D005215 1.2e-260 903.3 747 74.2
Cfa016972 Carpinus fangiana HOM05D004098 ORTHO05D005215 2.8e-260 902.1 749 75.4
COL.COLO4_07798 Corchorus olitorius HOM05D004098 ORTHO05D005215 5.8e-258 894.4 732 75.1
TWI14G0432 Tripterygium wilfordii HOM05D004098 ORTHO05D005215 8.3e-257 890.6 745 75.6
TWI39G0299 Tripterygium wilfordii HOM05D004098 ORTHO05D005215 8.3e-257 890.6 745 75.6
CiPaw.11G211200 Carya illinoinensis HOM05D004098 ORTHO05D005215 3.5e-255 885.2 755 74.6
Prupe.6G036900 Prunus persica HOM05D004098 ORTHO05D005215 7.8e-255 884.0 755 73.1
Potri.011G170000 Populus trichocarpa HOM05D004098 ORTHO05D005215 2.5e-253 879.0 748 73.1
Ciclev10007566m.g Citrus clementina HOM05D004098 ORTHO05D005215 2.3e-251 872.5 746 73.5
Rhsim04G0006500 Rhododendron simsii HOM05D004098 ORTHO05D005215 4.4e-250 868.2 793 58.5
Atru.chr2.3913 Acer truncatum HOM05D004098 ORTHO05D005215 5.8e-250 867.8 633 71.1
MD11G1047800 Malus domestica HOM05D004098 ORTHO05D005215 5.8e-250 867.8 748 72.1
Dinv19633 Davidia involucrata HOM05D004098 ORTHO05D005215 9.8e-250 867.1 753 73.3
Dinv42526 Davidia involucrata HOM05D004098 ORTHO05D005215 2.9e-249 865.5 639 69.3
GSVIVG01014864001 Vitis vinifera HOM05D004098 ORTHO05D005215 8.3e-249 864.0 753 73.0
TAR626G1397 Trochodendron aralioides HOM05D004098 ORTHO05D005215 7.1e-248 860.9 760 71.6
Thecc.07G000300 Theobroma cacao HOM05D004098 ORTHO05D005215 3.5e-247 858.6 737 73.3
PGR083G2418 Punica granatum HOM05D004098 ORTHO05D005215 6.0e-247 857.8 740 72.4
Peaxi162Scf00018g00064 Petunia axillaris HOM05D004098 ORTHO05D005215 3.9e-246 855.1 782 69.2
Gohir.A04G000400 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.1e-245 853.6 742 73.0
Actinidia37106 Actinidia chinensis HOM05D004098 ORTHO05D005215 1.9e-245 852.8 754 71.1
Duzib268G0918 Durio zibethinus HOM05D004098 ORTHO05D005215 2.5e-245 852.4 739 71.9
Gohir.D05G388750 Gossypium hirsutum HOM05D004098 ORTHO05D005215 3.3e-245 852.0 742 72.9
FvH4_3g41350 Fragaria vesca HOM05D004098 ORTHO05D005215 4.3e-245 851.7 750 72.4
FAN16G0876 Fragaria x ananassa HOM05D004098 ORTHO05D005215 7.3e-245 850.9 750 72.0
MD03G1045600 Malus domestica HOM05D004098 ORTHO05D005215 7.3e-245 850.9 746 71.3
Gorai.009G455400 Gossypium raimondii HOM05D004098 ORTHO05D005215 9.5e-245 850.5 743 72.9
Manes.05G203450 Manihot esculenta HOM05D004098 ORTHO05D005215 1.2e-244 850.1 747 72.2
Gohir.D05G388800 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.1e-244 849.4 743 72.8
FAN11G1160 Fragaria x ananassa HOM05D004098 ORTHO05D005215 2.8e-244 849.0 750 72.3
FAN21G3119 Fragaria x ananassa HOM05D004098 ORTHO05D005215 3.6e-244 848.6 750 72.0
CANSAT11G1316 Cannabis sativa HOM05D004098 ORTHO05D005215 4.7e-244 848.2 754 71.6
Potri.001G473100 Populus trichocarpa HOM05D004098 ORTHO05D005215 6.8e-243 844.3 748 72.3
QL08p000136 Quercus lobata HOM05D004098 ORTHO05D005215 6.8e-243 844.3 757 72.3
Cc05_g15840 Coffea canephora HOM05D004098 ORTHO05D005215 2.6e-242 842.4 744 73.0
Oeu052018.2 Olea europaea HOM05D004098 ORTHO05D005215 4.4e-242 841.6 771 69.6
RcHm_v2.0_Chr5g0074241 Rosa chinensis HOM05D004098 ORTHO05D005215 2.2e-241 839.3 750 71.7
FAN25G0546 Fragaria x ananassa HOM05D004098 ORTHO05D005215 4.9e-241 838.2 777 70.1
Aqoxy4G02276 Aquilegia oxysepala HOM05D004098 ORTHO05D005215 9.2e-240 833.9 767 70.3
Eucgr.F01979 Eucalyptus grandis HOM05D004098 ORTHO05D005215 1.6e-239 833.2 739 71.7
Hma1.2p1_0321F.1_g124430 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 6.0e-239 831.2 743 71.3
THA.LOC104813473 Tarenaya hassleriana HOM05D004098 ORTHO05D005215 7.8e-239 830.9 737 71.1
Nn2g14376 Nelumbo nucifera HOM05D004098 ORTHO05D005215 1.2e-236 823.5 758 70.2
Sabra11G0137000 Salix brachista HOM05D004098 ORTHO05D005215 8.1e-236 820.8 824 66.1
Sc03g0011840 Simmondsia chinensis HOM05D004098 ORTHO05D005215 1.1e-235 820.5 757 69.2
Nitab4.5_0000611g0190 Nicotiana tabacum HOM05D004098 ORTHO05D005215 1.2e-234 817.0 780 58.1
DCAR_016814 Daucus carota HOM05D004098 ORTHO05D005215 5.8e-234 814.7 774 68.0
SalBow8G2465 Salvia bowleyana HOM05D004098 ORTHO05D005215 2.2e-233 812.8 764 69.0
Lj8C185G3 Lonicera japonica HOM05D004098 ORTHO05D005215 8.4e-233 810.8 842 63.4
Migut.M01572 Erythranthe guttata HOM05D004098 ORTHO05D005215 7.1e-232 807.7 743 69.9
CsaV3_3G003580 Cucumis sativus L. HOM05D004098 ORTHO05D005215 2.3e-230 802.7 755 69.5
PGSC0003DMG400011237 Solanum tuberosum HOM05D004098 ORTHO05D005215 3.9e-230 802.0 747 69.3
MELO3C014028.2 Cucumis melo HOM05D004098 ORTHO05D005215 1.1e-229 800.4 755 69.3
Solyc10g005650.3 Solanum lycopersicum HOM05D004098 ORTHO05D005215 9.6e-229 797.3 747 69.1
PSO675G3414 Papaver somniferum HOM05D004098 ORTHO05D005215 1.6e-228 796.6 760 67.9
Sopen10g001620 Solanum pennellii HOM05D004098 ORTHO05D005215 3.6e-228 795.4 747 69.1
MSTRG.16125 Avicennia marina HOM05D004098 ORTHO05D005215 8.1e-228 794.3 749 68.9
BolC3t14019H Brassica oleracea HOM05D004098 ORTHO05D005215 6.9e-227 791.2 766 65.5
AL8G31920 Arabidopsis lyrata HOM05D004098 ORTHO05D005215 4.4e-226 788.5 738 67.3
PSO541G4185 Papaver somniferum HOM05D004098 ORTHO05D005215 7.6e-226 787.7 760 67.5
Lsat_1_v5_gn_5_241 Lactuca sativa HOM05D004098 ORTHO05D005215 3.8e-225 785.4 761 68.9
CSS0008075 Camellia sinensis var. sinensis HOM05D004098 ORTHO05D005215 1.9e-224 783.1 680 71.9
CARHR269690 Cardamine hirsuta HOM05D004098 ORTHO05D005215 1.9e-224 783.1 739 67.0
C03p15880 Brassica napus HOM05D004098 ORTHO05D005215 2.4e-224 782.7 740 67.4
AT5G56290 Arabidopsis thaliana HOM05D004098 ORTHO05D005215 7.1e-224 781.2 738 67.2
ECA246G1615 Erigeron canadensis HOM05D004098 ORTHO05D005215 2.1e-223 779.6 736 69.8
BraA03t10663Z Brassica rapa HOM05D004098 ORTHO05D005215 2.7e-223 779.2 766 58.4
Nitab4.5_0004488g0010 Nicotiana tabacum HOM05D004098 ORTHO05D005215 2.7e-223 779.2 787 64.8
HanXRQChr05g0160701 Helianthus annuus HOM05D004098 ORTHO05D005215 1.9e-221 773.1 742 69.3
BcaB01g04390 Brassica carinata HOM05D004098 ORTHO05D005215 3.3e-221 772.3 740 66.8
Thhalv10012791m.g Eutrema salsugineum HOM05D004098 ORTHO05D005215 1.3e-220 770.4 738 66.8
DCAR_019936 Daucus carota HOM05D004098 ORTHO05D005215 1.6e-220 770.0 790 57.1
BcaC01g06414 Brassica carinata HOM05D004098 ORTHO05D005215 3.6e-220 768.8 741 66.9
ClCG10G003580 Citrullus lanatus HOM05D004098 ORTHO05D005215 6.9e-219 764.6 841 63.1
AUR62043123 Chenopodium quinoa HOM05D004098 ORTHO05D005215 2.6e-218 762.7 747 67.7
Carub.0008s1661 Capsella rubella HOM05D004098 ORTHO05D005215 3.4e-218 762.3 738 66.9
A03p13590 Brassica napus HOM05D004098 ORTHO05D005215 9.9e-218 760.8 740 66.6
BraA10t43460Z Brassica rapa HOM05D004098 ORTHO05D005215 4.9e-217 758.4 776 63.7
BolC9t57610H Brassica oleracea HOM05D004098 ORTHO05D005215 1.2e-215 753.8 744 66.0
unitig_749.g13703 Utricularia gibba HOM05D004098 ORTHO05D005215 3.0e-214 749.2 755 64.8
Sp6g18140 Schrenkiella parvula HOM05D004098 ORTHO05D005215 8.7e-214 747.7 740 65.3
CAN.G492.64 Capsicum annuum HOM05D004098 ORTHO05D005215 2.5e-213 746.1 745 66.4
Aa31LG3G12200 Aethionema arabicum HOM05D004098 ORTHO05D005215 7.4e-213 744.6 739 65.8
A10p13580 Brassica napus HOM05D004098 ORTHO05D005215 6.2e-212 741.5 740 65.9
C09p47570 Brassica napus HOM05D004098 ORTHO05D005215 3.5e-207 725.7 740 65.1
EL10Ac4g07494 Beta vulgaris HOM05D004098 ORTHO05D005215 6.7e-206 721.5 748 65.8
Haze_09929 Corylus avellana HOM05D004098 ORTHO05D005215 2.5e-200 703.0 788 62.7
SGA_v2.0_scaffold7G03562 Striga asiatica HOM05D004098 ORTHO05D005215 4.3e-197 692.2 795 61.9
MSTRG.7048 Avicennia marina HOM05D004098 ORTHO05D005215 1.2e-194 684.1 746 62.3
BcaB05g22257 Brassica carinata HOM05D004098 ORTHO05D005215 7.7e-194 681.4 775 59.6
Actinidia35440 Actinidia chinensis HOM05D004098 ORTHO05D005215 8.5e-193 677.9 599 60.3
BcaC04g20111 Brassica carinata HOM05D004098 ORTHO05D005215 1.6e-183 647.1 745 57.2
Hma1.2p1_0321F.1_g124440 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 3.0e-182 642.9 551 75.0
Sed0000599 Sechium edule HOM05D004098 ORTHO05D005215 2.6e-181 639.8 564 63.5
ClCG00G000320 Citrullus lanatus HOM05D004098 ORTHO05D005215 1.8e-179 633.6 1242 43.6
ATR0751G081 Amborella trichopoda HOM05D004098 ORTHO05D005215 5.5e-176 622.1 724 60.2
Mapoly0064s0022 Marchantia polymorpha HOM05D004098 ORTHO05D005215 2.3e-166 590.1 760 55.3
Os08g0500100 Oryza sativa ssp. japonica HOM05D004098 ORTHO05D005215 3.8e-161 572.8 752 57.8
Pp3c14_5170 Physcomitrium patens HOM05D004098 ORTHO05D005215 3.4e-157 559.7 768 54.7
Zm00001eb199560 Zea mays HOM05D004098 ORTHO05D005215 2.7e-154 550.1 755 56.4
HPP92_017855 Vanilla planifolia HOM05D004098 ORTHO05D005215 4.5e-154 549.3 452 63.1
SMO361G0081 Selaginella moellendorffii HOM05D004098 ORTHO05D005215 1.6e-151 540.8 762 55.4
Zm00001eb034080 Zea mays HOM05D004098 ORTHO05D005215 6.1e-151 538.9 757 55.5
SEGI_20896 Sequoiadendron giganteum HOM05D004098 ORTHO05D005215 1.3e-132 478.0 439 57.6
vmacro09792 Vaccinium macrocarpon HOM05D004098 ORTHO05D005215 3.5e-130 469.9 535 50.5
CBR_g45681 Chara braunii HOM05D004098 ORTHO05D005215 2.4e-115 420.6 652 42.2
Ah.04g164860 Amaranthus hybridus HOM05D004098 ORTHO05D005215 4.0e-110 403.3 360 81.7
AUR62017764 Chenopodium quinoa HOM05D004098 ORTHO05D005215 3.0e-105 387.1 384 77.6
AUR62017765 Chenopodium quinoa HOM05D004098 ORTHO05D005215 2.5e-104 384.0 377 57.0
CDE05G2641 Ceratophyllum demersum HOM05D004098 ORTHO05D005215 1.1e-102 378.6 361 77.6
vmacro09791 Vaccinium macrocarpon HOM05D004098 ORTHO05D005215 3.8e-100 370.2 303 90.8
Ah.04g164850 Amaranthus hybridus HOM05D000499 ORTHO05D002036 8.2e-87 325.9 377 52.5
CDE05G2368 Ceratophyllum demersum HOM05D004098 ORTHO05D005215 4.3e-80 303.5 326 52.8
BolC2t07653H Brassica oleracea HOM05D004098 ORTHO05D005215 1.4e-73 282.0 486 38.1
Cre14.g616750 Chlamydomonas reinhardtii HOM05D004098 ORTHO05D005215 7.4e-72 276.2 739 32.6
Cpa.g.sc12.52 Carica papaya HOM05D004098 ORTHO05D005215 4.1e-70 270.4 206 66.5
Gohir.A13G000950 Gossypium hirsutum HOM05D004098 ORTHO05D005215 5.3e-70 270.0 314 49.7
Gohir.A04G000600 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.0e-65 255.8 168 72.0
MCO05G026 Micromonas commoda HOM05D004098 ORTHO05D005215 1.0e-65 255.8 851 38.4
C02p15370 Brassica napus HOM05D004098 ORTHO05D005215 1.6e-58 231.9 480 34.2
Cpa.g.sc12.51 Carica papaya HOM05D004098 ORTHO05D005215 5.7e-56 223.4 148 75.0
PRCOL_00000784 Prasinoderma coloniale HOM05D004098 ORTHO05D005215 3.8e-52 210.7 700 30.4
Gohir.A03G000002 Gossypium hirsutum HOM05D004098 ORTHO05D005215 7.2e-43 179.9 233 44.2
Gohir.A06G201500 Gossypium hirsutum HOM05D004098 ORTHO05D005215 6.8e-41 173.3 98 86.7
Gohir.1Z049490 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.3e-39 169.1 92 88.0
Gorai.009G455200 Gossypium raimondii HOM05D004098 ORTHO05D005215 1.1e-38 166.0 233 43.3
Gohir.A12G000850 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.5e-35 154.8 233 40.3
Lsat_1_v5_gn_6_79681 Lactuca sativa HOM05D004098 ORTHO05D005215 3.4e-32 144.4 151 53.6
Gohir.A08G253600 Gossypium hirsutum HOM05D004098 ORTHO05D005215 4.4e-32 144.1 80 87.5
Gohir.A11G000300 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.1e-30 139.4 84 82.1
Gohir.A01G000401 Gossypium hirsutum HOM05D004098 ORTHO05D005215 3.2e-30 137.9 82 79.3
Lsat_1_v5_gn_8_153381 Lactuca sativa HOM05D004098 ORTHO05D005215 1.5e-27 129.0 140 52.1
A02p09220 Brassica napus HOM05D004098 ORTHO05D005215 5.6e-27 127.1 93 68.8
Lsat_1_v5_gn_8_35540 Lactuca sativa HOM05D004098 ORTHO05D005215 5.6e-27 127.1 166 50.0
Gohir.1Z049406 Gossypium hirsutum HOM05D004098 ORTHO05D005215 7.3e-27 126.7 101 65.3
Haze_09931 Corylus avellana HOM05D000997 ORTHO05D000828 2.1e-26 125.2 109 58.7
Gohir.A03G000007 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.1e-26 125.2 67 83.6
Gohir.A07G135000 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.3e-23 115.9 87 67.8
Gohir.A05G415701 Gossypium hirsutum HOM05D002376 ORTHO05D004654 2.2e-23 115.2 70 78.6
Gohir.A12G000500 Gossypium hirsutum HOM05D004741 ORTHO05D005454 3.2e-22 111.3 61 85.2
Gohir.D03G178425 Gossypium hirsutum HOM05D004098 ORTHO05D005215 7.0e-22 110.2 61 83.6
TPR.G8441 Trifolium pratense HOM05D004098 ORTHO05D021823 2.3e-20 105.1 156 92.9
Lsat_1_v5_gn_2_71300 Lactuca sativa HOM05D004098 ORTHO05D005215 3.0e-20 104.8 79 69.6
Cpa.g.sc12.49 Carica papaya HOM05D004098 ORTHO05D021823 9.5e-19 99.8 154 90.9
MBI15_g32219_MAGBIO Magnolia biondii HOM05D004098 ORTHO05D005215 2.3e-17 95.1 107 55.1
Gohir.A03G081400 Gossypium hirsutum HOM05D004098 ORTHO05D005215 3.5e-13 81.3 60 70.0
Lsat_1_v5_gn_3_67900 Lactuca sativa HOM05D004098 ORTHO05D005215 1.3e-12 79.3 205 32.7
HPP92_017856 Vanilla planifolia HOM05D004098 ORTHO05D005215 1.3e-12 79.3 110 47.3
Gohir.A05G415601 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.3e-12 78.6 91 45.1
Hma1.2p1_0321F.1_g124420 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 1.9e-11 75.5 155 41.3
Cfa024256 Carpinus fangiana HOM05D032100 ORTHO05D126575 4.7e-10 70.9 190 30.0
C02p15380 Brassica napus HOM05D004098 ORTHO05D005215 5.2e-09 67.4 136 39.0
Hund01805 Selenicereus undatus HOM05D004098 ORTHO05D005215 4.4e-08 64.3 43 72.1
Gohir.1Z049608 Gossypium hirsutum HOM05D004098 ORTHO05D005215 9.9e-08 63.2 65 47.7
Lsat_1_v5_gn_9_105500 Lactuca sativa HOM05D004098 ORTHO05D001482 1.3e-07 62.8 92 45.7
Hma1.2p1_1190F.1_g265410 Hydrangea macrophylla HOM05D001237 ORTHO05D001827 6.4e-07 60.5 54 50.0
Gohir.A06G201400 Gossypium hirsutum HOM05D002376 ORTHO05D004654 1.9e-06 58.9 30 86.7
Gohir.A08G000028 Gossypium hirsutum HOM05D002376 ORTHO05D004654 3.2e-06 58.2 29 89.7
Gohir.A09G249700 Gossypium hirsutum HOM05D004098 ORTHO05D021823 7.1e-06 57.0 30 83.3


User provided reference genes

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