Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.005G004200 Phaseolus vulgaris HOM05D004715 ORTHO05D005644 3.2e-110 401.7 200 100.0
Phvul.005G019100 Phaseolus vulgaris HOM05D004715 ORTHO05D005644 1.9e-107 392.5 200 96.5
Glyma.04G133700 Glycine max HOM05D004715 ORTHO05D005644 5.7e-91 337.8 200 81.0
Lalb_Chr22g0350991 Lupinus albus HOM05D004715 ORTHO05D005644 5.7e-91 337.8 200 81.0
Ca_12943_v3 Cicer arietinum L. HOM05D004715 ORTHO05D005644 4.8e-90 334.7 200 81.0
arahy.Tifrunner.gnm1.ann1.GHMT6A Arachis hypogaea HOM05D004715 ORTHO05D005644 6.3e-90 334.3 200 83.5
arahy.Tifrunner.gnm1.ann1.EP2671 Arachis hypogaea HOM05D004715 ORTHO05D005644 1.1e-89 333.6 200 83.5
Medtr3g005080 Medicago truncatula HOM05D004715 ORTHO05D005644 2.4e-89 332.4 200 80.5
Medtr1g052500 Medicago truncatula HOM05D004715 ORTHO05D005644 4.1e-89 331.6 200 80.0
QL05p027948 Quercus lobata HOM05D004715 ORTHO05D005644 4.1e-89 331.6 198 80.8
Lj3g0005798 Lotus japonicus HOM05D004715 ORTHO05D005644 2.0e-88 329.3 198 78.8
CsaV3_7G032580 Cucumis sativus L. HOM05D004715 ORTHO05D005644 3.4e-88 328.6 201 78.1
ClCG09G002750 Citrullus lanatus HOM05D004715 ORTHO05D005644 1.0e-87 327.0 201 77.6
TPR.G25532 Trifolium pratense HOM05D004715 ORTHO05D005644 1.3e-87 326.6 200 80.0
Cfa001997 Carpinus fangiana HOM05D004715 ORTHO05D005644 6.5e-87 324.3 200 79.5
CiPaw.01G245000 Carya illinoinensis HOM05D004715 ORTHO05D005644 1.9e-86 322.8 200 79.0
MELO3C023404.2 Cucumis melo HOM05D004715 ORTHO05D005644 4.2e-86 321.6 201 76.6
Sed0013432 Sechium edule HOM05D004715 ORTHO05D005644 4.2e-86 321.6 200 77.5
Glyma.07G105000 Glycine max HOM05D004715 ORTHO05D005644 2.7e-85 318.9 200 77.5
CANSAT56G4056 Cannabis sativa HOM05D004715 ORTHO05D005644 6.1e-85 317.8 200 74.5
GSVIVG01017274001 Vitis vinifera HOM05D004715 ORTHO05D005644 4.3e-83 311.6 198 75.8
TWI18G0840 Tripterygium wilfordii HOM05D004715 ORTHO05D005644 1.5e-80 303.1 200 75.5
Gohir.D10G075500 Gossypium hirsutum HOM05D004715 ORTHO05D005644 2.5e-78 295.8 202 71.3
Gorai.011G081500 Gossypium raimondii HOM05D004715 ORTHO05D005644 2.5e-78 295.8 202 71.3
Prupe.3G081400 Prunus persica HOM05D004715 ORTHO05D005644 4.2e-78 295.0 200 69.5
FvH4_1g25440 Fragaria vesca HOM05D004715 ORTHO05D005644 1.2e-77 293.5 197 68.0
TAR369G0040 Trochodendron aralioides HOM05D004715 ORTHO05D005644 2.7e-77 292.4 200 71.0
RcHm_v2.0_Chr2g0123461 Rosa chinensis HOM05D004715 ORTHO05D005644 4.6e-77 291.6 197 69.0
RcHm_v2.0_Chr2g0136471 Rosa chinensis HOM05D004715 ORTHO05D005644 4.6e-77 291.6 197 69.0
Thecc.06G070800 Theobroma cacao HOM05D004715 ORTHO05D005644 1.0e-76 290.4 202 69.8
TWI12G0849 Tripterygium wilfordii HOM05D004715 ORTHO05D005644 3.9e-76 288.5 191 73.3
FAN23G0015 Fragaria x ananassa HOM05D004715 ORTHO05D005644 8.8e-76 287.3 197 67.0
Manes.11G053500 Manihot esculenta HOM05D004715 ORTHO05D005644 8.8e-76 287.3 203 69.5
AT1G80190 Arabidopsis thaliana HOM05D004715 ORTHO05D005644 1.1e-75 287.0 203 69.0
Aqoxy1G00791 Aquilegia oxysepala HOM05D004715 ORTHO05D005644 2.0e-75 286.2 197 69.5
Gohir.A05G125400 Gossypium hirsutum HOM05D004715 ORTHO05D005644 2.6e-75 285.8 199 69.3
Gorai.009G130400 Gossypium raimondii HOM05D004715 ORTHO05D005644 2.6e-75 285.8 199 69.3
FAN19G1260 Fragaria x ananassa HOM05D000191 ORTHO05D005644 3.3e-75 285.4 191 68.1
Thhalv10019155m.g Eutrema salsugineum HOM05D004715 ORTHO05D005644 4.4e-75 285.0 203 69.5
Cpa.g.sc10.228 Carica papaya HOM05D004715 ORTHO05D005644 5.7e-75 284.6 203 70.4
Ciclev10026407m.g Citrus clementina HOM05D004715 ORTHO05D005644 9.7e-75 283.9 203 69.0
FAN26G3166 Fragaria x ananassa HOM05D004715 ORTHO05D005644 2.8e-74 282.3 191 67.5
Gohir.D05G126400 Gossypium hirsutum HOM05D004715 ORTHO05D005644 2.8e-74 282.3 199 68.3
FAN28G2078 Fragaria x ananassa HOM05D004715 ORTHO05D005644 4.8e-74 281.6 191 67.5
Potri.006G142300 Populus trichocarpa HOM05D004715 ORTHO05D005644 8.2e-74 280.8 203 67.0
Aa31LG1G19480 Aethionema arabicum HOM05D004715 ORTHO05D005644 1.1e-73 280.4 203 67.5
PSO384G1744 Papaver somniferum HOM05D004715 ORTHO05D005644 1.1e-73 280.4 200 67.0
Duzib160G0636 Durio zibethinus HOM05D004715 ORTHO05D005644 1.4e-73 280.0 193 69.4
AL2G41320 Arabidopsis lyrata HOM05D004715 ORTHO05D005644 5.3e-73 278.1 203 66.5
CARHR074290 Cardamine hirsuta HOM05D004715 ORTHO05D005644 5.3e-73 278.1 203 66.5
Carub.0002s2733 Capsella rubella HOM05D004715 ORTHO05D005644 6.9e-73 277.7 201 67.2
Carub.0005s0104 Capsella rubella HOM05D004715 ORTHO05D005644 6.9e-73 277.7 201 67.2
Nn7g35903 Nelumbo nucifera HOM05D004715 ORTHO05D005644 6.9e-73 277.7 199 66.3
C02p37490 Brassica napus HOM05D004715 ORTHO05D005644 1.5e-72 276.6 200 66.0
MD17G1206800 Malus domestica HOM05D004715 ORTHO05D005644 2.0e-72 276.2 200 66.0
PSO339G1448 Papaver somniferum HOM05D004715 ORTHO05D005644 2.0e-72 276.2 200 66.5
Duzib235G0750 Durio zibethinus HOM05D004715 ORTHO05D005644 2.6e-72 275.8 202 66.8
BcaC03g15994 Brassica carinata HOM05D004715 ORTHO05D005644 4.5e-72 275.0 200 65.5
THA.LOC104812498 Tarenaya hassleriana HOM05D004715 ORTHO05D005644 7.7e-72 274.2 203 67.0
Ciclev10027256m.g Citrus clementina HOM05D004715 ORTHO05D005644 1.7e-71 273.1 198 67.2
A02p23740 Brassica napus HOM05D004715 ORTHO05D005644 2.2e-71 272.7 200 65.5
BraA02t07366Z Brassica rapa HOM05D004715 ORTHO05D005644 2.2e-71 272.7 200 65.5
PGR102G1320 Punica granatum HOM05D004715 ORTHO05D005644 6.5e-71 271.2 197 66.5
BcaB05g25289 Brassica carinata HOM05D004715 ORTHO05D005644 1.4e-70 270.0 203 64.0
Aa31LG4G470 Aethionema arabicum HOM05D004715 ORTHO05D005644 4.2e-70 268.5 194 67.5
VMungo1080G0231 Vigna mungo HOM05D006110 ORTHO05D007774 9.4e-70 267.3 143 90.9
Atru.chr1.3057 Acer truncatum HOM05D004715 ORTHO05D005644 4.7e-69 265.0 186 71.5
BcaB02g07291 Brassica carinata HOM05D004715 ORTHO05D005644 6.1e-69 264.6 201 63.2
Lsat_1_v5_gn_5_132400 Lactuca sativa HOM05D004715 ORTHO05D005644 6.1e-69 264.6 200 64.5
HPP92_025406 Vanilla planifolia HOM05D004715 ORTHO05D005644 7.9e-69 264.2 196 63.8
Sp5g35610 Schrenkiella parvula HOM05D004715 ORTHO05D005644 1.4e-68 263.5 220 60.5
Haze_16520 Corylus avellana HOM05D004715 ORTHO05D005644 3.0e-68 262.3 200 67.5
DCAR_025488 Daucus carota HOM05D004715 ORTHO05D005644 9.7e-67 257.3 200 62.5
Sc14g0006620 Simmondsia chinensis HOM05D004715 ORTHO05D005644 6.3e-66 254.6 201 61.7
AUR62000794 Chenopodium quinoa HOM05D004715 ORTHO05D005644 1.1e-65 253.8 201 61.7
BolC2t09760H Brassica oleracea HOM05D004715 ORTHO05D005644 1.8e-65 253.1 194 62.9
Dinv30576 Davidia involucrata HOM05D004715 ORTHO05D005644 1.8e-65 253.1 200 63.5
SEGI_27675 Sequoiadendron giganteum HOM05D004715 ORTHO05D005644 2.4e-65 252.7 196 60.7
Os05g0453900 Oryza sativa ssp. japonica HOM05D004715 ORTHO05D005644 3.1e-65 252.3 196 61.2
HanXRQChr15g0463891 Helianthus annuus HOM05D004715 ORTHO05D005644 7.0e-65 251.1 201 63.2
Hma1.2p1_0317F.1_g123670 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 7.0e-65 251.1 200 62.0
Hma1.2p1_1398F.1_g280822 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 7.0e-65 251.1 200 62.0
Hund21699 Selenicereus undatus HOM05D004715 ORTHO05D005644 7.0e-65 251.1 190 63.2
Sabra06G0111400 Salix brachista HOM05D004715 ORTHO05D005644 9.1e-65 250.8 268 51.5
TPR.G1414 Trifolium pratense HOM05D004715 ORTHO05D005644 2.6e-64 249.2 148 81.8
CDE02G3949 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 1.7e-63 246.5 196 60.2
Hma1.2p1_1398F.1_g280805 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 1.7e-63 246.5 200 61.0
EL10Ac4g09393 Beta vulgaris HOM05D004715 ORTHO05D005644 2.2e-63 246.1 201 59.2
VMungo0331G0566 Vigna mungo HOM05D004715 ORTHO05D005644 2.9e-63 245.7 175 76.0
SGA_v2.0_scaffold5G02664 Striga asiatica HOM05D004715 ORTHO05D005644 1.9e-62 243.0 227 56.4
Actinidia01764 Actinidia chinensis HOM05D004715 ORTHO05D005644 2.5e-62 242.7 197 61.4
C06p28980 Brassica napus HOM05D004715 ORTHO05D005644 2.5e-62 242.7 195 60.0
Oeu052278.1 Olea europaea HOM05D004715 ORTHO05D005644 5.5e-62 241.5 227 55.9
BcaC08g45296 Brassica carinata HOM05D004715 ORTHO05D005644 9.4e-62 240.7 194 59.8
MSTRG.11119 Avicennia marina HOM05D004715 ORTHO05D005644 1.2e-61 240.4 226 57.1
AUR62005173 Chenopodium quinoa HOM05D004715 ORTHO05D005644 2.1e-61 239.6 190 61.1
Eucgr.F02544 Eucalyptus grandis HOM05D004715 ORTHO05D005644 1.8e-60 236.5 171 66.7
CSS0021095 Camellia sinensis var. sinensis HOM05D004715 ORTHO05D005644 2.3e-60 236.1 198 62.1
Lj5A69G39 Lonicera japonica HOM05D004715 ORTHO05D005644 2.3e-60 236.1 233 54.1
BolC6t38064H Brassica oleracea HOM05D004715 ORTHO05D005644 1.2e-59 233.8 195 58.5
Migut.I00797 Erythranthe guttata HOM05D004715 ORTHO05D005644 3.3e-59 232.3 227 54.2
Psat5g222760 Pisum sativum HOM05D004715 ORTHO05D005644 1.3e-58 230.3 144 75.7
Rhsim08G0215800 Rhododendron simsii HOM05D004715 ORTHO05D005644 2.2e-58 229.6 230 53.0
TPR.G18869 Trifolium pratense HOM05D004715 ORTHO05D005644 2.2e-58 229.6 136 81.6
vmacro18968 Vaccinium macrocarpon HOM05D004715 ORTHO05D005644 1.4e-57 226.9 248 50.8
ATR0210G050 Amborella trichopoda HOM05D004715 ORTHO05D005644 1.8e-57 226.5 175 61.7
Ah.06g189580 Amaranthus hybridus HOM05D004715 ORTHO05D005644 3.5e-56 222.2 191 56.0
TPR.G1424 Trifolium pratense HOM05D004715 ORTHO05D005644 1.7e-55 219.9 193 61.7
Atru.BG.159.p Acer truncatum HOM05D004715 ORTHO05D005644 5.0e-55 218.4 147 72.8
SGA_v2.0_scaffold5G02667 Striga asiatica HOM05D005082 ORTHO05D006474 5.0e-55 218.4 231 51.5
Cc04_g04100 Coffea canephora HOM05D004715 ORTHO05D005644 2.1e-53 213.0 205 54.6
CAN.G1830.13 Capsicum annuum HOM05D004715 ORTHO05D005644 1.4e-52 210.3 233 46.4
Nitab4.5_0004281g0110 Nicotiana tabacum HOM05D004715 ORTHO05D005644 3.0e-52 209.1 224 49.1
PGSC0003DMG403012981 Solanum tuberosum HOM05D004715 ORTHO05D005644 3.0e-52 209.1 233 47.6
Solyc09g008630.3 Solanum lycopersicum HOM05D004715 ORTHO05D005644 1.2e-51 207.2 230 47.0
Sopen09g003430 Solanum pennellii HOM05D004715 ORTHO05D005644 2.0e-51 206.5 230 46.5
unitig_0.g2002 Utricularia gibba HOM05D004715 ORTHO05D005644 7.0e-49 198.0 252 44.4
Oeu063807.1 Olea europaea HOM05D004715 ORTHO05D005644 9.1e-49 197.6 153 63.4
SMO347G0348 Selaginella moellendorffii HOM05D004715 ORTHO05D005644 1.0e-47 194.1 191 46.1
AagrBONN_evm.TU.Sc2ySwM_368.872 Anthoceros agrestis HOM05D004715 ORTHO05D005644 1.7e-47 193.4 197 45.7
A07p26560 Brassica napus HOM05D004715 ORTHO05D005644 1.5e-46 190.3 154 60.4
FAN14G0801 Fragaria x ananassa HOM05D004715 ORTHO05D005644 5.5e-46 188.3 197 50.3
SalBow2G3045 Salvia bowleyana HOM05D004715 ORTHO05D005644 6.1e-45 184.9 193 51.8
Nitab4.5_0006709g0030 Nicotiana tabacum HOM05D004715 ORTHO05D005644 1.2e-43 180.6 205 46.3
Pp3c20_16980 Physcomitrium patens HOM05D004715 ORTHO05D005644 7.5e-43 177.9 201 44.3
Pp3c20_17250 Physcomitrium patens HOM05D004715 ORTHO05D005644 7.5e-43 177.9 201 44.3
Zm00001eb065860 Zea mays HOM05D004715 ORTHO05D005644 2.8e-42 176.0 196 47.4
Ca_26811_v3 Cicer arietinum L. HOM05D004715 ORTHO05D005644 8.3e-42 174.5 114 74.6
CBR_g20274 Chara braunii HOM05D006908 ORTHO05D008662 1.6e-40 170.2 197 44.7
Peaxi162Scf00125g00003 Petunia axillaris HOM05D004715 ORTHO05D005644 2.3e-39 166.4 159 52.8
Rhsim03G0103800 Rhododendron simsii HOM05D004715 ORTHO05D005644 6.6e-39 164.9 198 46.0
TAR369G0577 Trochodendron aralioides HOM05D004715 ORTHO05D005644 6.6e-39 164.9 200 47.5
CDE09G0533 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 1.5e-38 163.7 118 61.9
TPR.G13435 Trifolium pratense HOM05D004715 ORTHO05D005644 1.5e-38 163.7 113 74.3
ECA234G4462 Erigeron canadensis HOM05D004715 ORTHO05D005644 1.2e-37 160.6 151 54.3
Gohir.A10G076000 Gossypium hirsutum HOM05D004715 ORTHO05D005644 1.2e-37 160.6 116 69.0
MBI14_g02860_MAGBIO Magnolia biondii HOM05D004715 ORTHO05D005644 1.4e-36 157.1 118 65.3
COL.COLO4_12914 Corchorus olitorius HOM05D004715 ORTHO05D005644 1.2e-35 154.1 111 67.6
Peaxi162Scf01195g00016 Petunia axillaris HOM05D004715 ORTHO05D005644 1.5e-35 153.7 192 43.8
Rhsim03G0101400 Rhododendron simsii HOM05D004715 ORTHO05D005644 3.7e-34 149.1 191 43.5
Cc00_g27240 Coffea canephora HOM05D004715 ORTHO05D005644 9.2e-33 144.4 151 51.7
Mapoly0008s0246 Marchantia polymorpha HOM05D004715 ORTHO05D005644 6.0e-32 141.7 206 38.8
BraA07t30299Z Brassica rapa HOM05D004715 ORTHO05D005644 8.6e-31 137.9 112 58.9
MCO12G383 Micromonas commoda HOM05D004715 ORTHO05D005644 8.6e-31 137.9 197 34.5
TPR.G30851 Trifolium pratense HOM05D004715 ORTHO05D005644 4.3e-30 135.6 82 79.3
Gohir.A10G075900 Gossypium hirsutum HOM05D004715 ORTHO05D005644 5.6e-30 135.2 86 70.9
CDE09G0914 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 3.1e-28 129.4 120 52.5
FvH4_6g30230 Fragaria vesca HOM05D004715 ORTHO05D005644 4.0e-28 129.0 197 40.1
Medtr7g052330 Medicago truncatula HOM05D004715 ORTHO05D005644 6.8e-28 128.3 186 41.9
PRCOL_00005608 Prasinoderma coloniale HOM05D004715 ORTHO05D005644 1.7e-18 97.1 204 29.4
TAR623G1252 Trochodendron aralioides HOM05D004715 ORTHO05D005644 3.0e-15 86.3 61 70.5
MSTRG.22727 Avicennia marina HOM05D004715 ORTHO05D005644 1.1e-14 84.3 66 59.1
Cre03.g161050 Chlamydomonas reinhardtii HOM05D004715 ORTHO05D005644 4.3e-14 82.4 174 28.2
Hma1.2p1_1398F.1_g280810 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 2.6e-11 73.2 59 66.1
Hma1.2p1_1398F.1_g280823 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 1.5e-06 57.4 48 54.2
Cfa026515 Carpinus fangiana HOM05D040851 ORTHO05D024893 7.3e-06 55.1 181 26.5


User provided reference genes

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