Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.004G168350 Phaseolus vulgaris HOM05D003644 ORTHO05D004305 7.5e-93 344.0 189 100.0
VMungo0464G0020 Vigna mungo HOM05D003644 ORTHO05D004305 8.3e-84 313.9 193 92.7
Glyma.01G145600 Glycine max HOM05D003644 ORTHO05D004305 6.3e-76 287.7 193 87.0
Glyma.09G193400 Glycine max HOM05D003644 ORTHO05D004305 1.1e-75 287.0 193 83.4
Medtr6g088280 Medicago truncatula HOM05D003644 ORTHO05D004305 7.0e-67 257.7 197 74.1
Psat1g044920 Pisum sativum HOM05D003644 ORTHO05D004305 6.0e-66 254.6 196 75.0
TPR.G34913 Trifolium pratense HOM05D003644 ORTHO05D004305 1.9e-64 249.6 207 68.6
Lj2g0017641 Lotus japonicus HOM05D003644 ORTHO05D004305 3.6e-63 245.4 197 73.1
Glyma.05G229100 Glycine max HOM05D003644 ORTHO05D004305 1.9e-56 223.0 202 66.3
VMungo0251G1747 Vigna mungo HOM05D003644 ORTHO05D004305 1.8e-54 216.5 202 62.4
Glyma.08G036100 Glycine max HOM05D003644 ORTHO05D004305 5.4e-51 204.9 203 63.1
arahy.Tifrunner.gnm1.ann1.TDG8V6 Arachis hypogaea HOM05D003644 ORTHO05D004305 1.6e-50 203.4 207 63.3
Duzib187G1156 Durio zibethinus HOM05D003644 ORTHO05D004305 1.7e-49 199.9 204 60.8
Thecc.09G105500 Theobroma cacao HOM05D003644 ORTHO05D004305 1.7e-49 199.9 204 60.8
Phvul.002G311400 Phaseolus vulgaris HOM05D003644 ORTHO05D004305 3.0e-49 199.1 202 59.9
Ciclev10010512m.g Citrus clementina HOM05D003644 ORTHO05D004305 3.9e-49 198.7 207 65.7
QL02p044635 Quercus lobata HOM05D003644 ORTHO05D004305 5.1e-49 198.4 205 65.9
Lalb_Chr22g0352641 Lupinus albus HOM05D003644 ORTHO05D004305 2.5e-48 196.1 209 64.6
GSVIVG01015346001 Vitis vinifera HOM05D003644 ORTHO05D004305 2.8e-47 192.6 204 62.3
Manes.16G112500 Manihot esculenta HOM05D003644 ORTHO05D004305 1.5e-45 186.8 202 60.4
CiPaw.03G227900 Carya illinoinensis HOM05D003644 ORTHO05D004305 5.8e-45 184.9 207 58.0
Manes.03G024200 Manihot esculenta HOM05D003644 ORTHO05D004305 5.8e-45 184.9 205 58.0
Haze_25785 Corylus avellana HOM05D003644 ORTHO05D004305 8.4e-44 181.0 204 56.4
Duzib168G0231 Durio zibethinus HOM05D003644 ORTHO05D004305 2.4e-43 179.5 205 58.5
Lalb_Chr05g0223051 Lupinus albus HOM05D003644 ORTHO05D004305 2.1e-42 176.4 177 64.4
Cpa.g.sc23.57 Carica papaya HOM05D003644 ORTHO05D004305 7.8e-42 174.5 202 55.0
Duzib150G1566 Durio zibethinus HOM05D003644 ORTHO05D004305 7.8e-42 174.5 205 57.6
MD02G1057600 Malus domestica HOM05D003644 ORTHO05D004305 1.0e-41 174.1 205 59.5
Potri.018G084100 Populus trichocarpa HOM05D003644 ORTHO05D004305 6.6e-41 171.4 206 55.8
CANSAT56G0200 Cannabis sativa HOM05D003644 ORTHO05D004305 1.9e-40 169.9 223 55.2
TWI34G1832 Tripterygium wilfordii HOM05D003644 ORTHO05D004305 9.6e-40 167.5 210 60.0
arahy.Tifrunner.gnm1.ann1.XM0XDL Arachis hypogaea HOM05D003644 ORTHO05D004305 6.2e-39 164.9 214 57.9
Prupe.7G225200 Prunus persica HOM05D003644 ORTHO05D004305 1.8e-38 163.3 213 54.5
TWI32G0193 Tripterygium wilfordii HOM05D003644 ORTHO05D004305 1.8e-38 163.3 205 59.5
Gorai.010G073900 Gossypium raimondii HOM05D003644 ORTHO05D004305 2.4e-38 162.9 196 58.7
TAR624G1421 Trochodendron aralioides HOM05D003644 ORTHO05D004305 1.5e-37 160.2 200 57.5
TAR636G2793 Trochodendron aralioides HOM05D003644 ORTHO05D004305 9.9e-37 157.5 205 55.1
CSS0008241 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 2.2e-36 156.4 208 60.1
Gohir.D06G063400 Gossypium hirsutum HOM05D003644 ORTHO05D004305 4.9e-36 155.2 193 57.0
THA.LOC104814562 Tarenaya hassleriana HOM05D003644 ORTHO05D004305 6.4e-36 154.8 202 50.5
CSS0010496 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 1.9e-35 153.3 200 52.0
CSS0033414 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 1.9e-35 153.3 200 52.0
Gorai.001G007300 Gossypium raimondii HOM05D003644 ORTHO05D004305 9.3e-35 151.0 199 52.3
Gohir.D05G026700 Gossypium hirsutum HOM05D003644 ORTHO05D004305 1.6e-34 150.2 208 58.7
arahy.Tifrunner.gnm1.ann1.X7P2RE Arachis hypogaea HOM05D003644 ORTHO05D004305 2.1e-34 149.8 161 59.0
Lalb_Chr16g0388081 Lupinus albus HOM05D003644 ORTHO05D004305 7.8e-34 147.9 120 65.0
Gorai.009G026800 Gossypium raimondii HOM05D003644 ORTHO05D004305 1.3e-33 147.1 216 56.5
Gohir.A05G025200 Gossypium hirsutum HOM05D003644 ORTHO05D004305 2.3e-33 146.4 208 57.2
Gohir.D07G007600 Gossypium hirsutum HOM05D003644 ORTHO05D004305 2.3e-33 146.4 194 52.6
Potri.006G161100 Populus trichocarpa HOM05D003644 ORTHO05D004305 1.5e-32 143.7 207 50.7
Sabra18G0072500 Salix brachista HOM05D003644 ORTHO05D004305 1.5e-32 143.7 229 46.7
arahy.Tifrunner.gnm1.ann1.R9ZCFD Arachis hypogaea HOM05D003644 ORTHO05D004305 2.1e-31 139.8 151 62.3
Oeu015581.1 Olea europaea HOM05D003644 ORTHO05D004305 2.1e-31 139.8 198 48.0
Gohir.A07G004600 Gossypium hirsutum HOM05D003644 ORTHO05D004305 2.8e-31 139.4 189 53.4
MBI04_g14930_MAGBIO Magnolia biondii HOM05D003644 ORTHO05D004305 3.6e-31 139.0 207 49.8
Atru.chr7.1390 Acer truncatum HOM05D003644 ORTHO05D004305 6.2e-31 138.3 211 51.7
PGR142G1369 Punica granatum HOM05D003644 ORTHO05D004305 1.8e-30 136.7 214 51.9
TPR.G23503 Trifolium pratense HOM05D003644 ORTHO05D004305 1.8e-30 136.7 166 56.6
Peaxi162Scf00231g00061 Petunia axillaris HOM05D003644 ORTHO05D004305 5.3e-30 135.2 208 53.8
Gohir.A06G064800 Gossypium hirsutum HOM05D003644 ORTHO05D004305 6.9e-30 134.8 196 52.0
SalBow6G0047 Salvia bowleyana HOM05D003644 ORTHO05D004305 1.2e-29 134.0 206 50.0
COL.COLO4_34805 Corchorus olitorius HOM05D003644 ORTHO05D004305 4.5e-29 132.1 210 53.8
FAN26G0903 Fragaria x ananassa HOM05D003644 ORTHO05D004305 4.5e-29 132.1 212 50.5
FAN19G0617 Fragaria x ananassa HOM05D003644 ORTHO05D004305 7.6e-29 131.3 212 51.4
Sed0019018 Sechium edule HOM05D003644 ORTHO05D004305 1.7e-28 130.2 211 44.5
Nn2g11654 Nelumbo nucifera HOM05D003644 ORTHO05D004305 2.2e-28 129.8 209 47.4
Nn3g18137 Nelumbo nucifera HOM05D003644 ORTHO05D004305 2.9e-28 129.4 211 47.9
FvH4_1g05660 Fragaria vesca HOM05D003644 ORTHO05D004305 3.8e-28 129.0 212 50.9
ClCG11G002330 Citrullus lanatus HOM05D003644 ORTHO05D004305 8.4e-28 127.9 213 49.8
FAN26G3023 Fragaria x ananassa HOM05D003644 ORTHO05D004305 8.4e-28 127.9 212 50.5
MELO3C004570.2 Cucumis melo HOM05D003644 ORTHO05D004305 1.4e-27 127.1 210 52.9
CsaV3_2G002110 Cucumis sativus L. HOM05D003644 ORTHO05D004305 4.2e-27 125.6 211 49.8
FAN28G1311 Fragaria x ananassa HOM05D003644 ORTHO05D004305 4.2e-27 125.6 223 48.4
FAN23G2152 Fragaria x ananassa HOM05D003644 ORTHO05D004305 5.4e-27 125.2 223 50.7
Cc06_g10070 Coffea canephora HOM05D003644 ORTHO05D004305 7.1e-27 124.8 205 50.2
MD15G1192000 Malus domestica HOM05D003644 ORTHO05D004305 9.3e-27 124.4 209 48.8
Sed0028016 Sechium edule HOM05D003644 ORTHO05D004305 1.2e-26 124.0 207 45.4
Peaxi162Scf00665g00003 Petunia axillaris HOM05D003644 ORTHO05D004305 2.1e-26 123.2 205 51.2
Oeu002262.2 Olea europaea HOM05D003644 ORTHO05D004305 6.0e-26 121.7 138 54.3
MSTRG.6013 Avicennia marina HOM05D003644 ORTHO05D004305 7.9e-26 121.3 206 43.2
THA.LOC104804017 Tarenaya hassleriana HOM05D003644 ORTHO05D004305 1.0e-25 120.9 201 50.2
Carub.0007s1180 Capsella rubella HOM05D003644 ORTHO05D004305 1.3e-25 120.6 201 42.8
MELO3C024703.2 Cucumis melo HOM05D003644 ORTHO05D004305 1.3e-25 120.6 209 45.9
Sed0013314 Sechium edule HOM05D003644 ORTHO05D004305 2.3e-25 119.8 202 48.0
MSTRG.19571 Avicennia marina HOM05D003644 ORTHO05D004305 8.7e-25 117.9 199 49.7
Dinv41640 Davidia involucrata HOM05D003644 ORTHO05D004305 8.7e-25 117.9 163 50.9
CsaV3_1G021830 Cucumis sativus L. HOM05D003644 ORTHO05D004305 1.5e-24 117.1 208 44.2
AT4G28840 Arabidopsis thaliana HOM05D003644 ORTHO05D004305 1.9e-24 116.7 196 42.9
ClCG06G008860 Citrullus lanatus HOM05D003644 ORTHO05D004305 1.9e-24 116.7 212 41.5
AUR62010940 Chenopodium quinoa HOM05D003644 ORTHO05D004305 3.3e-24 115.9 209 42.6
BolC1t01024H Brassica oleracea HOM05D003644 ORTHO05D004305 1.6e-23 113.6 194 39.2
RcHm_v2.0_Chr2g0091291 Rosa chinensis HOM05D003644 ORTHO05D004305 1.6e-23 113.6 150 57.3
C01p10620 Brassica napus HOM05D003644 ORTHO05D004305 2.1e-23 113.2 194 39.2
BraA01t00855Z Brassica rapa HOM05D003644 ORTHO05D004305 2.1e-23 113.2 194 39.2
Thhalv10002311m.g Eutrema salsugineum HOM05D003644 ORTHO05D004305 2.1e-23 113.2 199 44.2
PGSC0003DMG400000374 Solanum tuberosum HOM05D003644 ORTHO05D004305 2.8e-23 112.8 203 46.8
A01p09070 Brassica napus HOM05D003644 ORTHO05D004305 4.8e-23 112.1 194 38.7
Sopen12g003210 Solanum pennellii HOM05D003644 ORTHO05D004305 4.8e-23 112.1 203 47.3
Sp7g26840 Schrenkiella parvula HOM05D003644 ORTHO05D004305 6.2e-23 111.7 198 49.5
BcaC06g32601 Brassica carinata HOM05D003644 ORTHO05D004305 1.8e-22 110.2 196 41.3
C08p42300 Brassica napus HOM05D003644 ORTHO05D004305 2.4e-22 109.8 197 43.7
BolC8t51790H Brassica oleracea HOM05D003644 ORTHO05D004305 2.4e-22 109.8 197 43.7
Psat7g014640 Pisum sativum HOM05D003644 ORTHO05D004305 2.4e-22 109.8 162 53.1
PSO566G0277 Papaver somniferum HOM05D003644 ORTHO05D004305 3.1e-22 109.4 209 48.8
BcaC07g41224 Brassica carinata HOM05D003644 ORTHO05D004305 4.0e-22 109.0 197 43.7
BcaNung01359 Brassica carinata HOM05D003644 ORTHO05D004305 4.0e-22 109.0 162 42.6
A03p58450 Brassica napus HOM05D003644 ORTHO05D004305 4.0e-22 109.0 196 40.8
BolC7t46126H Brassica oleracea HOM05D003644 ORTHO05D004305 4.0e-22 109.0 196 40.8
Sopen07g007520 Solanum pennellii HOM05D003644 ORTHO05D004305 6.9e-22 108.2 201 47.3
C07p56470 Brassica napus HOM05D003644 ORTHO05D004305 2.6e-21 106.3 196 40.3
CAN.G1774.6 Capsicum annuum HOM05D003644 ORTHO05D004305 2.6e-21 106.3 191 49.2
DCAR_012057 Daucus carota HOM05D003644 ORTHO05D004305 2.6e-21 106.3 210 46.7
AL3G48010 Arabidopsis lyrata HOM05D003644 ORTHO05D004305 4.5e-21 105.5 196 41.8
A09p59020 Brassica napus HOM05D003644 ORTHO05D004305 4.5e-21 105.5 197 42.6
BraA09t41288Z Brassica rapa HOM05D003644 ORTHO05D004305 4.5e-21 105.5 197 42.6
PSO782G2161 Papaver somniferum HOM05D003644 ORTHO05D004305 4.5e-21 105.5 209 50.2
PGSC0003DMG400003139 Solanum tuberosum HOM05D003644 ORTHO05D004305 7.6e-21 104.8 204 42.6
EL10Ac8g18428 Beta vulgaris HOM05D003644 ORTHO05D004305 9.9e-21 104.4 195 49.2
BcaC09g51666 Brassica carinata HOM05D003644 ORTHO05D004305 2.2e-20 103.2 161 42.2
Actinidia20403 Actinidia chinensis HOM05D003644 ORTHO05D004305 2.9e-20 102.8 190 50.5
Hund09226 Selenicereus undatus HOM05D003644 ORTHO05D004305 6.4e-20 101.7 190 42.6
Sp3g33380 Schrenkiella parvula HOM05D003644 ORTHO05D004305 1.1e-19 100.9 202 44.1
Hund09225 Selenicereus undatus HOM05D003644 ORTHO05D004305 1.9e-19 100.1 208 45.7
Aa31LG2G21540 Aethionema arabicum HOM05D003644 ORTHO05D004305 9.3e-19 97.8 140 46.4
CARHR110580 Cardamine hirsuta HOM05D003644 ORTHO05D004305 6.0e-18 95.1 197 40.1
Lsat_1_v5_gn_8_96040 Lactuca sativa HOM05D003644 ORTHO05D004305 1.1e-16 90.9 129 48.1
BcaC07g41225 Brassica carinata HOM05D003644 ORTHO05D004305 1.9e-16 90.1 136 44.9
BolC7t40541H Brassica oleracea HOM05D003644 ORTHO05D004305 1.9e-16 90.1 198 42.4
Hma1.2p1_0945F.1_g240090 Hydrangea macrophylla HOM05D003644 ORTHO05D004305 3.3e-16 89.4 204 45.6
PGR102G0050 Punica granatum HOM05D003644 ORTHO05D004305 4.3e-16 89.0 217 46.5
ECA234G2378 Erigeron canadensis HOM05D003644 ORTHO05D004305 5.6e-16 88.6 207 38.6
BcaB08g34898 Brassica carinata HOM05D003644 ORTHO05D004305 1.3e-15 87.4 136 43.4
COL.COLO4_17464 Corchorus olitorius HOM05D003644 ORTHO05D004305 1.3e-15 87.4 149 47.0
A09p12690 Brassica napus HOM05D003644 ORTHO05D004305 1.6e-15 87.0 140 43.6
Migut.K00491 Erythranthe guttata HOM05D003644 ORTHO05D004305 1.6e-15 87.0 163 39.3
Thhalv10026355m.g Eutrema salsugineum HOM05D003644 ORTHO05D004305 1.6e-15 87.0 193 34.7
Aa31LG8G17030 Aethionema arabicum HOM05D003644 ORTHO05D004305 4.8e-15 85.5 129 47.3
C09p15050 Brassica napus HOM05D003644 ORTHO05D004305 4.8e-15 85.5 136 43.4
BcaNung04091 Brassica carinata HOM05D003644 ORTHO05D004305 1.1e-14 84.3 196 37.2
C07p01040 Brassica napus HOM05D003644 ORTHO05D004305 2.4e-14 83.2 199 38.7
Lsat_1_v5_gn_5_147641 Lactuca sativa HOM05D003644 ORTHO05D004305 5.3e-14 82.0 129 55.0
Carub.0003s3436 Capsella rubella HOM05D003644 ORTHO05D004305 1.5e-13 80.5 164 37.2
Medtr8g102890 Medicago truncatula HOM05D003644 ORTHO05D004305 1.5e-13 80.5 98 57.1
Hund26238 Selenicereus undatus HOM05D003644 ORTHO05D004305 2.6e-13 79.7 203 38.4
A07p00580 Brassica napus HOM05D003644 ORTHO05D004305 3.4e-13 79.3 196 38.3
Nitab4.5_0014820g0010 Nicotiana tabacum HOM05D003644 ORTHO05D004305 5.8e-13 78.6 152 46.1
Sc18g0001380 Simmondsia chinensis HOM05D003644 ORTHO05D004305 1.0e-12 77.8 202 34.7
Actinidia09436 Actinidia chinensis HOM05D003644 ORTHO05D004305 2.2e-12 76.6 210 43.8
Eucgr.C01280 Eucalyptus grandis HOM05D003644 ORTHO05D004305 4.9e-12 75.5 204 40.2
Actinidia32668 Actinidia chinensis HOM05D003644 ORTHO05D004305 6.5e-12 75.1 157 43.3
BcaB03g16807 Brassica carinata HOM05D003644 ORTHO05D004305 6.5e-12 75.1 189 38.1
BcaC06g36690 Brassica carinata HOM05D003644 ORTHO05D004305 1.4e-11 73.9 117 45.3
Aqoxy7G01525 Aquilegia oxysepala HOM05D003644 ORTHO05D004305 5.5e-11 72.0 194 36.1
BraA07t27854Z Brassica rapa HOM05D003644 ORTHO05D004305 5.5e-11 72.0 137 41.6
BcaC04g22808 Brassica carinata HOM05D003644 ORTHO05D004305 7.1e-11 71.6 140 40.0
BolC9t54408H Brassica oleracea HOM05D003644 ORTHO05D004305 7.1e-11 71.6 140 40.0
DCAR_010477 Daucus carota HOM05D003644 ORTHO05D004305 1.2e-10 70.9 175 39.4
Nitab4.5_0001004g0030 Nicotiana tabacum HOM05D003644 ORTHO05D004305 2.1e-10 70.1 118 50.8
Sc08g0007690 Simmondsia chinensis HOM05D003644 ORTHO05D004305 2.1e-10 70.1 160 38.8
Solyc12g007240.3 Solanum lycopersicum HOM05D003644 ORTHO05D004305 6.1e-10 68.6 135 41.5
Zm00001eb360290 Zea mays HOM05D003644 ORTHO05D004305 1.0e-09 67.8 173 37.6
AL7G23640 Arabidopsis lyrata HOM05D003644 ORTHO05D004305 3.9e-09 65.9 113 42.5
BraA09t36915Z Brassica rapa HOM05D003644 ORTHO05D004305 1.1e-08 64.3 76 48.7
HanXRQChr12g0358181 Helianthus annuus HOM05D003644 ORTHO05D004305 1.1e-08 64.3 198 31.3
Sc08g0007700 Simmondsia chinensis HOM05D003644 ORTHO05D004305 1.5e-08 63.9 152 32.9
AT2G20080 Arabidopsis thaliana HOM05D003644 ORTHO05D004305 1.9e-08 63.5 157 36.3
HanXRQChr14g0449921 Helianthus annuus HOM05D003644 ORTHO05D004305 3.3e-08 62.8 197 33.5
Rhsim05G0043500 Rhododendron simsii HOM05D003644 ORTHO05D004305 5.7e-08 62.0 199 35.2
Oeu018442.1 Olea europaea HOM05D003644 ORTHO05D004305 7.4e-08 61.6 109 45.9
Os05g0559316 Oryza sativa ssp. japonica HOM05D003644 ORTHO05D004305 1.3e-07 60.8 86 47.7
Nitab4.5_0002431g0010 Nicotiana tabacum HOM05D003644 ORTHO05D004305 2.8e-07 59.7 90 53.3
Zm00001eb156860 Zea mays HOM05D003644 ORTHO05D004305 4.8e-07 58.9 170 36.5
unitig_578.g15927 Utricularia gibba HOM05D003644 ORTHO05D004305 8.2e-07 58.2 98 40.8
HPP92_024624 Vanilla planifolia HOM05D003644 ORTHO05D004305 2.4e-06 56.6 191 34.0
Zm00001eb343410 Zea mays HOM05D003644 ORTHO05D004305 2.4e-06 56.6 182 34.6
BcaB03g16801 Brassica carinata HOM05D003644 ORTHO05D004305 5.3e-06 55.5 30 76.7
CARHR236630 Cardamine hirsuta HOM05D003644 ORTHO05D004305 6.9e-06 55.1 66 47.0
Solyc07g018370.3 Solanum lycopersicum HOM05D003644 ORTHO05D004305 9.0e-06 54.7 118 44.9


User provided reference genes

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