Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.004G164600 Phaseolus vulgaris HOM05D006226 ORTHO05D007738 0.0e+00 1297.0 643 100.0
VMungo0464G1421 Vigna mungo HOM05D006226 ORTHO05D007738 0.0e+00 1153.3 640 90.3
Glyma.07G085400 Glycine max HOM05D006226 ORTHO05D007738 0.0e+00 1120.5 645 85.9
Glyma.09G191500 Glycine max HOM05D006226 ORTHO05D007738 0.0e+00 1094.3 645 84.5
Lj2g0027193 Lotus japonicus HOM05D006226 ORTHO05D007738 3.5e-283 978.0 645 76.0
Psat1g043440 Pisum sativum HOM05D006226 ORTHO05D007738 4.7e-280 967.6 645 74.6
TPR.G10046 Trifolium pratense HOM05D006226 ORTHO05D007738 1.7e-274 949.1 645 74.3
Medtr6g087530 Medicago truncatula HOM05D006226 ORTHO05D007738 9.8e-270 933.3 642 73.4
arahy.Tifrunner.gnm1.ann1.9IQ1SY Arachis hypogaea HOM05D006226 ORTHO05D007738 1.6e-267 926.0 645 71.6
arahy.Tifrunner.gnm1.ann1.ZKYF3I Arachis hypogaea HOM05D006226 ORTHO05D007738 2.0e-267 925.6 645 71.8
QL02p040023 Quercus lobata HOM05D006226 ORTHO05D007738 2.3e-234 815.8 648 64.0
GSVIVG01015381001 Vitis vinifera HOM05D006226 ORTHO05D007738 5.4e-228 794.7 647 63.4
CiPaw.03G218400 Carya illinoinensis HOM05D006226 ORTHO05D007738 1.5e-225 786.6 650 63.5
Cfa003249 Carpinus fangiana HOM05D006226 ORTHO05D007738 1.9e-225 786.2 645 62.8
Ciclev10007624m.g Citrus clementina HOM05D006226 ORTHO05D007738 3.2e-220 768.8 646 61.9
Prupe.7G232400 Prunus persica HOM05D006226 ORTHO05D007738 6.2e-216 754.6 646 60.1
TAR383G0867 Trochodendron aralioides HOM05D006226 ORTHO05D007738 4.0e-215 751.9 641 60.8
CANSAT56G2062 Cannabis sativa HOM05D006226 ORTHO05D007738 2.0e-214 749.6 645 59.2
MD15G1183800 Malus domestica HOM05D006226 ORTHO05D007738 1.0e-210 737.3 646 59.1
Sabra18G0068600 Salix brachista HOM05D006226 ORTHO05D007738 1.3e-210 736.9 640 60.2
ClCG06G008620 Citrullus lanatus HOM05D006226 ORTHO05D007738 3.3e-209 732.3 646 58.7
MELO3C024624.2 Cucumis melo HOM05D006226 ORTHO05D007738 1.3e-208 730.3 647 58.4
Manes.16G114900 Manihot esculenta HOM05D006226 ORTHO05D007738 1.6e-208 729.9 645 59.8
COL.COLO4_34848 Corchorus olitorius HOM05D006226 ORTHO05D007738 2.8e-208 729.2 646 59.1
Rhsim01G0096900 Rhododendron simsii HOM05D006226 ORTHO05D007738 1.8e-207 726.5 647 58.6
Dinv36642 Davidia involucrata HOM05D006226 ORTHO05D007738 2.4e-207 726.1 617 61.3
RcHm_v2.0_Chr2g0090271 Rosa chinensis HOM05D006226 ORTHO05D007738 1.7e-205 719.9 646 58.2
FvH4_1g04570 Fragaria vesca HOM05D006226 ORTHO05D007738 8.4e-205 717.6 647 57.7
Potri.018G081500 Populus trichocarpa HOM05D006226 ORTHO05D007738 5.5e-204 714.9 646 57.6
FAN19G1825 Fragaria x ananassa HOM05D006226 ORTHO05D007738 7.1e-204 714.5 647 57.5
FAN26G0472 Fragaria x ananassa HOM05D006226 ORTHO05D007738 9.3e-204 714.1 647 57.3
FAN23G2910 Fragaria x ananassa HOM05D006226 ORTHO05D007738 3.0e-202 709.1 647 57.0
Gorai.009G025300 Gossypium raimondii HOM05D006226 ORTHO05D007738 3.9e-202 708.8 647 57.2
vmacro20706 Vaccinium macrocarpon HOM05D006226 ORTHO05D007738 7.4e-201 704.5 723 53.9
Lj7C652G7 Lonicera japonica HOM05D006226 ORTHO05D007738 2.4e-199 699.5 649 57.0
AUR62010999 Chenopodium quinoa HOM05D006226 ORTHO05D007738 8.5e-197 691.0 643 55.2
Sed0016798 Sechium edule HOM05D006226 ORTHO05D007738 2.5e-196 689.5 647 56.1
Aqoxy7G03848 Aquilegia oxysepala HOM05D006226 ORTHO05D007738 1.6e-195 686.8 648 55.1
Eucgr.C01033 Eucalyptus grandis HOM05D006226 ORTHO05D007738 6.1e-195 684.9 640 55.8
Gohir.A05G023700 Gossypium hirsutum HOM05D006226 ORTHO05D007738 1.0e-194 684.1 649 55.6
AUR62021510 Chenopodium quinoa HOM05D006226 ORTHO05D007738 3.9e-194 682.2 648 54.8
Cpa.g.sc23.97 Carica papaya HOM05D006226 ORTHO05D007738 1.1e-188 664.1 617 58.3
Cc06_g09770 Coffea canephora HOM05D006226 ORTHO05D007738 2.1e-187 659.8 656 53.8
Nitab4.5_0004070g0080 Nicotiana tabacum HOM05D006226 ORTHO05D007738 4.7e-187 658.7 655 54.2
PGR142G1694 Punica granatum HOM05D006226 ORTHO05D007738 6.7e-186 654.8 649 55.5
Sc16g0007880 Simmondsia chinensis HOM05D006226 ORTHO05D007738 6.7e-186 654.8 639 54.6
Actinidia32679 Actinidia chinensis HOM05D006226 ORTHO05D007738 5.7e-185 651.7 553 59.1
Sopen11g026750 Solanum pennellii HOM05D006226 ORTHO05D007738 7.4e-185 651.4 649 53.5
CAN.G644.14 Capsicum annuum HOM05D006226 ORTHO05D007738 2.8e-184 649.4 653 53.0
PSO210G0226 Papaver somniferum HOM05D006226 ORTHO05D007738 1.4e-183 647.1 649 52.9
PSO210G1415 Papaver somniferum HOM05D006226 ORTHO05D007738 3.1e-183 646.0 649 53.3
PGSC0003DMG400026545 Solanum tuberosum HOM05D006226 ORTHO05D007738 2.0e-182 643.3 653 52.5
HanXRQChr12g0354991 Helianthus annuus HOM05D006226 ORTHO05D007738 2.9e-181 639.4 646 52.3
Carub.0003s2495 Capsella rubella HOM05D006226 ORTHO05D007738 1.4e-175 620.5 646 52.2
Migut.C00317 Erythranthe guttata HOM05D006226 ORTHO05D007738 1.6e-174 617.1 657 51.4
Thhalv10002431m.g Eutrema salsugineum HOM05D006226 ORTHO05D007738 2.0e-174 616.7 646 51.5
Sp3g22350 Schrenkiella parvula HOM05D006226 ORTHO05D007738 2.6e-174 616.3 646 51.4
ECA233G1203 Erigeron canadensis HOM05D006226 ORTHO05D007738 4.5e-174 615.5 633 52.9
FAN28G0796 Fragaria x ananassa HOM05D006226 ORTHO05D007738 2.2e-173 613.2 625 53.4
AL3G40100 Arabidopsis lyrata HOM05D006226 ORTHO05D007738 3.8e-173 612.5 636 52.7
BraA07t28567Z Brassica rapa HOM05D006226 ORTHO05D007738 1.9e-172 610.1 647 51.6
AT3G24560 Arabidopsis thaliana HOM05D006226 ORTHO05D007738 2.5e-172 609.8 646 51.4
CARHR100790 Cardamine hirsuta HOM05D006226 ORTHO05D007738 2.5e-172 609.8 647 51.2
BcaB06g26659 Brassica carinata HOM05D006226 ORTHO05D007738 5.5e-172 608.6 647 51.0
BcaC06g35722 Brassica carinata HOM05D006226 ORTHO05D007738 1.2e-171 607.4 645 51.6
BolC7t41639H Brassica oleracea HOM05D006226 ORTHO05D007738 1.2e-171 607.4 645 51.6
Lsat_1_v5_gn_8_3640 Lactuca sativa HOM05D006226 ORTHO05D007738 1.6e-171 607.1 661 50.8
C07p11670 Brassica napus HOM05D006226 ORTHO05D007738 8.0e-171 604.7 646 51.5
SalBow6G3053 Salvia bowleyana HOM05D006226 ORTHO05D007738 1.0e-170 604.4 650 50.5
Nitab4.5_0006735g0020 Nicotiana tabacum HOM05D006226 ORTHO05D007738 3.0e-170 602.8 658 50.5
CsaV3_1G025440 Cucumis sativus L. HOM05D006226 ORTHO05D007738 1.5e-169 600.5 483 61.7
THA.LOC104808766 Tarenaya hassleriana HOM05D006226 ORTHO05D007738 1.5e-169 600.5 684 48.2
DCAR_002532 Daucus carota HOM05D006226 ORTHO05D007738 5.7e-169 598.6 643 51.8
A07p07760 Brassica napus HOM05D006226 ORTHO05D007738 3.1e-167 592.8 668 49.4
Migut.G00900 Erythranthe guttata HOM05D006226 ORTHO05D007738 1.2e-166 590.9 650 49.7
Migut.K01516 Erythranthe guttata HOM05D006226 ORTHO05D007738 1.9e-164 583.6 659 49.0
Atru.chr7.1363 Acer truncatum HOM05D006226 ORTHO05D007738 3.4e-161 572.8 410 70.5
Hund09200 Selenicereus undatus HOM05D006226 ORTHO05D007738 4.1e-159 565.8 641 48.5
Aa31sc29G50 Aethionema arabicum HOM05D006226 ORTHO05D007738 6.6e-157 558.5 658 47.1
Thecc.09G109000 Theobroma cacao HOM05D006226 ORTHO05D007738 8.9e-154 548.1 426 65.0
Gohir.D05G025200 Gossypium hirsutum HOM05D006226 ORTHO05D007738 1.3e-152 544.3 531 54.0
EL10Ac8g18501 Beta vulgaris HOM05D006226 ORTHO05D007738 6.4e-152 542.0 622 51.0
SGA_v2.0_scaffold57G20229 Striga asiatica HOM05D006226 ORTHO05D007738 2.4e-151 540.0 674 45.0
CANSAT56G4481 Cannabis sativa HOM05D006226 ORTHO05D007738 4.6e-150 535.8 505 55.4
CSS0010508 Camellia sinensis var. sinensis HOM05D006226 ORTHO05D007738 5.9e-150 535.4 608 50.3
Zm00001eb237720 Zea mays HOM05D006226 ORTHO05D007738 1.1e-148 531.2 656 45.0
CSS0044649 Camellia sinensis var. sinensis HOM05D006226 ORTHO05D007738 7.5e-145 518.5 608 49.5
Ah.14g081980 Amaranthus hybridus HOM05D006226 ORTHO05D007738 6.2e-139 498.8 526 50.2
Lalb_Chr06g0174391 Lupinus albus HOM05D006226 ORTHO05D007738 1.5e-137 494.2 296 80.1
Oeu002240.1 Olea europaea HOM05D006226 ORTHO05D007738 7.3e-132 475.3 491 51.1
MBI04_g22018_MAGBIO Magnolia biondii HOM05D006226 ORTHO05D007738 2.2e-128 463.8 375 62.9
Nn8g39152 Nelumbo nucifera HOM05D006226 ORTHO05D007738 1.9e-127 460.7 331 71.6
Haze_25736 Corylus avellana HOM05D006226 ORTHO05D007738 4.1e-127 459.5 311 74.3
Lalb_Chr06g0174401 Lupinus albus HOM05D006226 ORTHO05D007738 3.8e-120 436.4 324 67.3
unitig_748.g7367 Utricularia gibba HOM05D006226 ORTHO05D007738 6.9e-106 389.0 639 38.3
ATR0315G013 Amborella trichopoda HOM05D006226 ORTHO05D007738 1.2e-97 361.7 331 57.1
AagrBONN_evm.TU.Sc2ySwM_368.2586 Anthoceros agrestis HOM05D006226 ORTHO05D007738 2.6e-97 360.5 650 34.3
Hma1.2p1_1463F.1_g285100 Hydrangea macrophylla HOM05D006226 ORTHO05D007738 6.5e-96 355.9 408 47.5
Solyc11g067040.2 Solanum lycopersicum HOM05D006226 ORTHO05D007738 2.5e-95 354.0 271 64.6
Peaxi162Scf01284g00025 Petunia axillaris HOM05D006226 ORTHO05D007738 2.8e-91 340.5 271 63.8
Mapoly0045s0077 Marchantia polymorpha HOM05D006226 ORTHO05D007738 1.3e-88 331.6 707 34.1
Peaxi162Scf01284g00019 Petunia axillaris HOM05D006226 ORTHO05D007738 5.7e-84 316.2 375 47.5
Solyc11g067030.2 Solanum lycopersicum HOM05D006226 ORTHO05D007738 4.6e-78 296.6 374 44.4
SMO170G0077 Selaginella moellendorffii HOM05D006226 ORTHO05D007738 2.5e-76 290.8 636 32.4
ECA234G2375 Erigeron canadensis HOM05D006226 ORTHO05D007738 1.7e-72 278.1 611 31.8
Hma1.2p1_1463F.1_g285110 Hydrangea macrophylla HOM05D006226 ORTHO05D007738 2.6e-65 254.2 317 44.2
MBI04_g29967_MAGBIO Magnolia biondii HOM05D006226 ORTHO05D007738 9.4e-63 245.7 400 40.2
Pp3c5_3840 Physcomitrium patens HOM05D006226 ORTHO05D007738 5.3e-58 229.9 566 30.9
CDE04G3650 Ceratophyllum demersum HOM05D001758 ORTHO05D005969 6.3e-51 206.5 144 67.4
ATR0315G018 Amborella trichopoda HOM05D006226 ORTHO05D007738 5.0e-48 196.8 328 36.3
CANSAT56G3567 Cannabis sativa HOM05D006226 ORTHO05D007738 1.1e-42 179.1 118 72.0
SGA_v2.0_scaffold88G27188 Striga asiatica HOM05D006226 ORTHO05D007738 3.6e-38 164.1 213 43.7
Nitab4.5_0004070g0110 Nicotiana tabacum HOM05D006226 ORTHO05D007738 2.0e-36 158.3 256 37.9
Os02g0266500 Oryza sativa ssp. japonica HOM05D006226 ORTHO05D007738 2.0e-36 158.3 123 60.2
CBR_g23439 Chara braunii HOM05D000019 ORTHO05D000002 1.7e-35 155.2 248 39.1
SGA_v2.0_scaffold3110G54276 Striga asiatica HOM05D006226 ORTHO05D007738 2.2e-35 154.8 118 60.2
SEGI_09304 Sequoiadendron giganteum HOM05D006226 ORTHO05D007738 1.1e-26 125.9 144 41.7
Nitab4.5_0004070g0120 Nicotiana tabacum HOM05D006226 ORTHO05D007738 2.4e-26 124.8 185 38.9
HanXRQChr00c0062g0571541 Helianthus annuus HOM05D006226 ORTHO05D007738 1.2e-20 105.9 172 36.6
Medtr6g087540 Medicago truncatula HOM05D006226 ORTHO05D007738 1.5e-20 105.5 135 48.1
Lsat_1_v5_gn_4_168221 Lactuca sativa HOM05D006226 ORTHO05D007738 2.0e-20 105.1 129 43.4
Actinidia07412 Actinidia chinensis HOM05D006226 ORTHO05D007738 4.1e-18 97.4 54 83.3
HPP92_005262 Vanilla planifolia HOM05D006226 ORTHO05D007738 4.1e-18 97.4 77 63.6
SEGI_25817 Sequoiadendron giganteum HOM05D006226 ORTHO05D007738 5.1e-16 90.5 81 56.8
CDE04G0435 Ceratophyllum demersum HOM05D006226 ORTHO05D007738 1.6e-14 85.5 165 33.9
HanXRQChr00c0062g0571551 Helianthus annuus HOM05D006226 ORTHO05D007738 3.4e-12 77.8 119 40.3
MCO09G126 Micromonas commoda HOM05D006226 ORTHO05D007738 7.1e-10 70.1 210 27.6
Pp3c24_3750 Physcomitrium patens HOM05D028917 ORTHO05D023487 1.6e-09 68.9 295 24.1
PRCOL_00000419 Prasinoderma coloniale HOM05D006226 ORTHO05D023487 5.1e-08 63.9 218 25.2
HPP92_005261 Vanilla planifolia HOM05D006226 ORTHO05D007738 5.1e-08 63.9 72 45.8


User provided reference genes

Program Settings