Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.004G160500 Phaseolus vulgaris HOM05D002984 ORTHO05D003561 5.4e-311 1070.1 523 100.0
VMungo0464G0094 Vigna mungo HOM05D002984 ORTHO05D014229 5.1e-192 674.9 554 63.7
Glyma.20G031800 Glycine max HOM05D002984 ORTHO05D014229 8.0e-137 491.5 574 49.3
VMungo0464G0392 Vigna mungo HOM05D006224 ORTHO05D007691 2.4e-96 357.1 546 40.7
Phvul.004G160600 Phaseolus vulgaris HOM05D002984 ORTHO05D014229 1.1e-88 331.6 485 42.1
VMungo0464G1061 Vigna mungo HOM05D002984 ORTHO05D003561 1.6e-73 281.2 442 40.3
Medtr6g085080 Medicago truncatula HOM05D002984 ORTHO05D022868 1.5e-63 248.1 714 28.9
Psat1g039440 Pisum sativum HOM05D002984 ORTHO05D022868 1.9e-61 241.1 686 28.4
Lj2g0016414 Lotus japonicus HOM05D002984 ORTHO05D022868 9.4e-61 238.8 709 28.5
Medtr6g085100 Medicago truncatula HOM05D002984 ORTHO05D022868 8.2e-57 225.7 748 27.3
Lalb_Chr14g0371321 Lupinus albus HOM05D002984 ORTHO05D003561 5.9e-55 219.5 723 27.0
TPR.G31455 Trifolium pratense HOM05D002984 ORTHO05D022868 8.5e-54 215.7 258 43.8
VMungo0251G1889 Vigna mungo HOM05D002984 ORTHO05D003561 9.4e-45 185.7 222 45.9
Lalb_Chr11g0074771 Lupinus albus HOM05D002984 ORTHO05D003561 4.7e-36 156.8 250 36.0
QL10p023599 Quercus lobata HOM05D002984 ORTHO05D003561 2.3e-35 154.5 376 30.9
FvH4_5g12610 Fragaria vesca HOM05D002984 ORTHO05D003561 3.3e-34 150.6 269 37.9
FAN18G2176 Fragaria x ananassa HOM05D002984 ORTHO05D003561 4.4e-34 150.2 269 37.5
arahy.Tifrunner.gnm1.ann1.48S2GI Arachis hypogaea HOM05D002984 ORTHO05D003561 1.7e-33 148.3 249 33.7
FAN18G0496 Fragaria x ananassa HOM05D002984 ORTHO05D003561 1.4e-32 145.2 271 37.3
Potri.008G117700 Populus trichocarpa HOM05D002984 ORTHO05D003561 2.0e-31 141.4 313 31.6
Medtr6g085130 Medicago truncatula HOM05D002984 ORTHO05D022868 2.7e-31 141.0 620 24.5
Eucgr.D01061 Eucalyptus grandis HOM05D002984 ORTHO05D003561 3.5e-31 140.6 249 33.3
CiPaw.16G003700 Carya illinoinensis HOM05D002984 ORTHO05D003561 4.5e-31 140.2 336 30.1
GSVIVG01011939001 Vitis vinifera HOM05D002984 ORTHO05D003561 4.5e-31 140.2 337 30.9
CSS0023076 Camellia sinensis var. sinensis HOM05D002984 ORTHO05D003561 5.9e-31 139.8 226 36.3
TAR622G0040 Trochodendron aralioides HOM05D002984 ORTHO05D003561 5.9e-31 139.8 362 30.1
FAN04G1620 Fragaria x ananassa HOM05D002984 ORTHO05D003561 7.7e-31 139.4 267 35.2
CSS0018296 Camellia sinensis var. sinensis HOM05D002984 ORTHO05D003561 1.7e-30 138.3 226 35.8
Sabra10G0097800 Salix brachista HOM05D002984 ORTHO05D003561 1.7e-30 138.3 312 30.4
HPP92_024319 Vanilla planifolia HOM05D002984 ORTHO05D003561 1.7e-30 138.3 672 23.5
Manes.14G098600 Manihot esculenta HOM05D002984 ORTHO05D003561 2.9e-30 137.5 379 28.8
Gohir.A03G097900 Gossypium hirsutum HOM05D002984 ORTHO05D003561 1.5e-29 135.2 312 30.1
vmacro10537 Vaccinium macrocarpon HOM05D002984 ORTHO05D003561 2.5e-29 134.4 232 33.6
Aqoxy3G00352 Aquilegia oxysepala HOM05D002984 ORTHO05D003561 3.2e-29 134.0 243 34.2
FAN13G1615 Fragaria x ananassa HOM05D002984 ORTHO05D003561 3.2e-29 134.0 254 36.2
TWI31G1103 Tripterygium wilfordii HOM05D002984 ORTHO05D003561 3.2e-29 134.0 232 34.5
Ciclev10030710m.g Citrus clementina HOM05D002984 ORTHO05D003561 9.4e-29 132.5 364 28.6
Duzib251G0734 Durio zibethinus HOM05D002984 ORTHO05D003561 1.2e-28 132.1 313 29.7
Gohir.D02G115800 Gossypium hirsutum HOM05D002984 ORTHO05D003561 1.2e-28 132.1 314 29.0
Gorai.005G138200 Gossypium raimondii HOM05D002984 ORTHO05D003561 1.2e-28 132.1 314 29.0
arahy.Tifrunner.gnm1.ann1.53ZNG0 Arachis hypogaea HOM05D002984 ORTHO05D003561 1.6e-28 131.7 233 32.6
CANSAT64G2157 Cannabis sativa HOM05D002984 ORTHO05D003561 1.6e-28 131.7 385 28.1
COL.COLO4_07881 Corchorus olitorius HOM05D002984 ORTHO05D003561 2.1e-28 131.3 371 29.1
Gorai.013G080300 Gossypium raimondii HOM05D002984 ORTHO05D003561 2.7e-28 131.0 263 31.6
Thecc.02G359700 Theobroma cacao HOM05D002984 ORTHO05D003561 2.7e-28 131.0 310 29.0
Nn4g23754 Nelumbo nucifera HOM05D002984 ORTHO05D003561 3.6e-28 130.6 232 32.8
FvH4_6g01630 Fragaria vesca HOM05D002984 ORTHO05D003561 4.7e-28 130.2 549 23.3
Migut.E00313 Erythranthe guttata HOM05D002984 ORTHO05D003561 6.1e-28 129.8 249 33.7
Ca_19808_v3 Cicer arietinum L. HOM05D002984 ORTHO05D003561 8.0e-28 129.4 247 33.2
Glyma.02G098500 Glycine max HOM05D002984 ORTHO05D003561 1.4e-27 128.6 236 34.3
Hma1.2p1_0030F.1_g018360 Hydrangea macrophylla HOM05D002984 ORTHO05D003561 1.4e-27 128.6 232 32.3
Gohir.A13G053428 Gossypium hirsutum HOM05D002984 ORTHO05D003561 1.8e-27 128.3 232 33.2
RcHm_v2.0_Chr4g0435671 Rosa chinensis HOM05D002984 ORTHO05D003561 1.8e-27 128.3 361 28.8
FvH4_4g27961 Fragaria vesca HOM05D002984 ORTHO05D003561 2.3e-27 127.9 361 28.0
FAN12G2547 Fragaria x ananassa HOM05D002984 ORTHO05D003561 2.3e-27 127.9 361 28.0
Gohir.D13G070100 Gossypium hirsutum HOM05D002984 ORTHO05D003561 5.2e-27 126.7 249 32.1
Lj2g0024103 Lotus japonicus HOM05D002984 ORTHO05D003561 5.2e-27 126.7 362 29.8
FAN13G2905 Fragaria x ananassa HOM05D002984 ORTHO05D003561 6.8e-27 126.3 229 33.6
THA.LOC104821957 Tarenaya hassleriana HOM05D002984 ORTHO05D003561 8.8e-27 125.9 232 34.1
TPR.G38317 Trifolium pratense HOM05D002984 ORTHO05D003561 1.2e-26 125.6 236 35.2
Dinv21122 Davidia involucrata HOM05D002984 ORTHO05D003561 1.5e-26 125.2 366 29.0
VMungo1215G2122 Vigna mungo HOM05D002984 ORTHO05D003561 1.5e-26 125.2 232 33.2
Atru.chr11.1338 Acer truncatum HOM05D002984 ORTHO05D003561 2.0e-26 124.8 334 28.7
AUR62015392 Chenopodium quinoa HOM05D002984 ORTHO05D003561 2.6e-26 124.4 239 32.2
Phvul.003G028300 Phaseolus vulgaris HOM05D002984 ORTHO05D003561 2.6e-26 124.4 245 33.5
Prupe.1G306600 Prunus persica HOM05D002984 ORTHO05D003561 2.6e-26 124.4 365 28.2
Atru.chr11.1335 Acer truncatum HOM05D002984 ORTHO05D003561 3.4e-26 124.0 334 28.7
EL10Ac3g05929 Beta vulgaris HOM05D002984 ORTHO05D003561 3.4e-26 124.0 318 28.0
FAN22G1846 Fragaria x ananassa HOM05D002984 ORTHO05D003561 3.4e-26 124.0 361 27.4
Potri.010G128600 Populus trichocarpa HOM05D002984 ORTHO05D003561 3.4e-26 124.0 312 29.5
TWI79G1384 Tripterygium wilfordii HOM05D002984 ORTHO05D003561 3.4e-26 124.0 234 34.6
Zm00001eb097890 Zea mays HOM05D002984 ORTHO05D003561 3.4e-26 124.0 221 33.0
Glyma.01G086600 Glycine max HOM05D002984 ORTHO05D003561 4.4e-26 123.6 236 33.1
arahy.Tifrunner.gnm1.ann1.X8TPQJ Arachis hypogaea HOM05D002984 ORTHO05D003561 5.7e-26 123.2 377 28.4
Lj2g0026621 Lotus japonicus HOM05D002984 ORTHO05D003561 5.7e-26 123.2 387 28.2
PGR142G0084 Punica granatum HOM05D002984 ORTHO05D003561 5.7e-26 123.2 310 28.7
DCAR_026720 Daucus carota HOM05D002984 ORTHO05D003561 7.5e-26 122.9 231 32.0
MD16G1047200 Malus domestica HOM05D002984 ORTHO05D003561 7.5e-26 122.9 232 32.3
Medtr5g054680 Medicago truncatula HOM05D002984 ORTHO05D003561 7.5e-26 122.9 380 28.2
PGR142G1725 Punica granatum HOM05D002984 ORTHO05D003561 7.5e-26 122.9 230 32.6
SHI14503 Sapria himalayana HOM05D002984 ORTHO05D003561 7.5e-26 122.9 240 30.8
Solyc12g070100.2 Solanum lycopersicum HOM05D002984 ORTHO05D003561 7.5e-26 122.9 310 29.4
MBI01_g32855_MAGBIO Magnolia biondii HOM05D002984 ORTHO05D003561 9.8e-26 122.5 263 31.2
Medtr1g013000 Medicago truncatula HOM05D002984 ORTHO05D003561 9.8e-26 122.5 540 23.9
Sopen12g027160 Solanum pennellii HOM05D002984 ORTHO05D003561 9.8e-26 122.5 310 29.4
arahy.Tifrunner.gnm1.ann1.IQF6NS Arachis hypogaea HOM05D002984 ORTHO05D003561 1.3e-25 122.1 377 28.1
FvH4_5g05460 Fragaria vesca HOM05D002984 ORTHO05D003561 1.3e-25 122.1 234 32.1
MD16G1046800 Malus domestica HOM05D002984 ORTHO05D003561 1.3e-25 122.1 249 31.3
Sp1g22670 Schrenkiella parvula HOM05D002984 ORTHO05D003561 1.7e-25 121.7 247 31.6
Lsat_1_v5_gn_4_19001 Lactuca sativa HOM05D002984 ORTHO05D003561 2.2e-25 121.3 232 32.8
Lalb_Chr17g0341951 Lupinus albus HOM05D002984 ORTHO05D003561 2.2e-25 121.3 381 27.6
A09p39560 Brassica napus HOM05D002984 ORTHO05D003561 2.8e-25 120.9 247 32.4
BraA09t39454Z Brassica rapa HOM05D002984 ORTHO05D003561 2.8e-25 120.9 247 32.4
Carub.0001s2494 Capsella rubella HOM05D002984 ORTHO05D003561 2.8e-25 120.9 242 32.6
Thhalv10006778m.g Eutrema salsugineum HOM05D002984 ORTHO05D003561 2.8e-25 120.9 243 32.5
Sc25g0002400 Simmondsia chinensis HOM05D002984 ORTHO05D003561 2.8e-25 120.9 322 28.9
Glyma.02G139432 Glycine max HOM05D013640 ORTHO05D014229 3.7e-25 120.6 202 35.1
BcaC05g26443 Brassica carinata HOM05D002984 ORTHO05D003561 4.8e-25 120.2 247 32.0
BolC5t31221H Brassica oleracea HOM05D002984 ORTHO05D003561 4.8e-25 120.2 247 32.0
Glyma.02G139300 Glycine max HOM05D013640 ORTHO05D014229 4.8e-25 120.2 191 37.7
BcaC01g01711 Brassica carinata HOM05D002984 ORTHO05D003561 6.3e-25 119.8 247 31.2
THA.LOC104808226 Tarenaya hassleriana HOM05D002984 ORTHO05D003561 6.3e-25 119.8 232 32.8
Cc11_g10490 Coffea canephora HOM05D002984 ORTHO05D003561 8.3e-25 119.4 314 28.3
BraA08t34651Z Brassica rapa HOM05D002984 ORTHO05D003561 1.1e-24 119.0 318 28.6
Cpa.g.sc1.211 Carica papaya HOM05D002984 ORTHO05D003561 1.1e-24 119.0 393 27.0
MELO3C012221.2 Cucumis melo HOM05D002984 ORTHO05D003561 1.1e-24 119.0 248 29.4
Aa31LG7G8960 Aethionema arabicum HOM05D002984 ORTHO05D003561 1.4e-24 118.6 245 31.4
A08p27060 Brassica napus HOM05D002984 ORTHO05D003561 1.4e-24 118.6 317 28.7
C03p72840 Brassica napus HOM05D002984 ORTHO05D003561 1.4e-24 118.6 247 30.8
CAN.G2.31 Capsicum annuum HOM05D002984 ORTHO05D003561 1.8e-24 118.2 300 29.3
HanXRQChr16g0529571 Helianthus annuus HOM05D002984 ORTHO05D003561 2.4e-24 117.9 233 32.2
Lj2g0022832 Lotus japonicus HOM05D002984 ORTHO05D003561 2.4e-24 117.9 236 33.1
AL1G39760 Arabidopsis lyrata HOM05D002984 ORTHO05D003561 3.1e-24 117.5 247 31.6
Dinv40427 Davidia involucrata HOM05D002984 ORTHO05D003561 4.1e-24 117.1 299 31.8
PSO017G4771 Papaver somniferum HOM05D002984 ORTHO05D003561 4.1e-24 117.1 345 28.1
PSO478G2088 Papaver somniferum HOM05D002984 ORTHO05D003561 4.1e-24 117.1 345 28.1
C05p24920 Brassica napus HOM05D002984 ORTHO05D003561 5.4e-24 116.7 383 27.2
Nitab4.5_0005194g0020 Nicotiana tabacum HOM05D002984 ORTHO05D003561 9.1e-24 115.9 231 32.0
ECA234G4415 Erigeron canadensis HOM05D002984 ORTHO05D003561 1.2e-23 115.5 233 33.5
CARHR025920 Cardamine hirsuta HOM05D002984 ORTHO05D003561 1.6e-23 115.2 247 30.8
Glyma.02G098300 Glycine max HOM05D002984 ORTHO05D003561 1.6e-23 115.2 247 30.8
SGA_v2.0_scaffold14G06838 Striga asiatica HOM05D002984 ORTHO05D003561 1.6e-23 115.2 233 32.2
AT1G25540 Arabidopsis thaliana HOM05D002984 ORTHO05D003561 2.7e-23 114.4 247 31.6
Oeu041887.1 Olea europaea HOM05D002984 ORTHO05D003561 2.7e-23 114.4 251 31.1
Actinidia14860 Actinidia chinensis HOM05D002984 ORTHO05D003561 3.5e-23 114.0 213 31.9
CsaV3_5G034050 Cucumis sativus L. HOM05D002984 ORTHO05D003561 3.5e-23 114.0 362 26.5
Lalb_Chr10g0099841 Lupinus albus HOM05D002984 ORTHO05D003561 3.5e-23 114.0 249 30.1
Psat2g101040 Pisum sativum HOM05D002984 ORTHO05D003561 3.5e-23 114.0 226 32.7
Sed0009737 Sechium edule HOM05D002984 ORTHO05D003561 3.5e-23 114.0 249 28.9
Sabra08G0089300 Salix brachista HOM05D002984 ORTHO05D003561 7.7e-23 112.8 273 30.8
Glyma.02G139200 Glycine max HOM05D013640 ORTHO05D014229 2.3e-22 111.3 156 37.2
ATR0681G393 Amborella trichopoda HOM05D002984 ORTHO05D003561 2.9e-22 110.9 236 33.5
BolC3t19582H Brassica oleracea HOM05D002984 ORTHO05D003561 2.9e-22 110.9 334 27.2
AUR62002298 Chenopodium quinoa HOM05D002984 ORTHO05D003561 2.9e-22 110.9 284 28.9
Os09g0306700 Oryza sativa ssp. japonica HOM05D002984 ORTHO05D003561 3.8e-22 110.5 236 29.2
unitig_27.g25246 Utricularia gibba HOM05D002984 ORTHO05D003561 8.6e-22 109.4 266 29.3
Phvul.003G059200 Phaseolus vulgaris HOM05D013640 ORTHO05D014229 1.1e-21 109.0 210 34.8
Hund03157 Selenicereus undatus HOM05D002984 ORTHO05D003561 2.5e-21 107.8 218 32.6
SEGI_39328 Sequoiadendron giganteum HOM05D002984 ORTHO05D003561 4.2e-21 107.1 255 29.4
Ah.13g072880 Amaranthus hybridus HOM05D002984 ORTHO05D003561 9.5e-21 105.9 237 30.4
FAN18G2442 Fragaria x ananassa HOM05D002984 ORTHO05D003561 1.6e-20 105.1 220 32.3
Lsat_1_v5_gn_3_60001 Lactuca sativa HOM05D002984 ORTHO05D003561 1.6e-20 105.1 241 29.5
Lalb_Chr00c63g0413851 Lupinus albus HOM05D002984 ORTHO05D003561 2.8e-20 104.4 117 43.6
Lalb_Chr08g0231921 Lupinus albus HOM05D002984 ORTHO05D003561 2.8e-20 104.4 117 43.6
HanXRQChr17g0552241 Helianthus annuus HOM05D002984 ORTHO05D003561 3.6e-20 104.0 243 29.6
FAN18G3612 Fragaria x ananassa HOM05D002984 ORTHO05D003561 6.1e-20 103.2 220 31.8
Phvul.003G059300 Phaseolus vulgaris HOM05D013640 ORTHO05D014229 1.0e-19 102.4 118 42.4
Mapoly0022s0114 Marchantia polymorpha HOM05D002984 ORTHO05D003561 1.4e-19 102.1 328 27.4
Haze_17450 Corylus avellana HOM05D002984 ORTHO05D003561 1.8e-19 101.7 269 27.5
VMungo0251G1126 Vigna mungo HOM05D013640 ORTHO05D014229 1.8e-19 101.7 99 45.5
Glyma.02G139366 Glycine max HOM05D013640 ORTHO05D014229 3.0e-19 100.9 233 30.9
Glyma.07G206066 Glycine max HOM05D013640 ORTHO05D014229 6.8e-19 99.8 157 34.4
VMungo0251G2386 Vigna mungo HOM05D013640 ORTHO05D014229 2.0e-18 98.2 320 30.0
MBI01_g09372_MAGBIO Magnolia biondii HOM05D002984 ORTHO05D003561 2.6e-18 97.8 294 29.6
Glyma.17G171600 Glycine max HOM05D013640 ORTHO05D014229 4.4e-18 97.1 199 30.2
Sabra02G0035000 Salix brachista HOM05D002984 ORTHO05D003561 7.5e-18 96.3 290 28.3
QL01p044747 Quercus lobata HOM05D002984 ORTHO05D003561 3.7e-17 94.0 387 25.6
FAN03G1604 Fragaria x ananassa HOM05D002984 ORTHO05D003561 6.3e-17 93.2 224 29.0
RcHm_v2.0_Chr7g0184721 Rosa chinensis HOM05D002984 ORTHO05D003561 1.8e-16 91.7 134 41.0
Rhsim09G0111200 Rhododendron simsii HOM05D002984 ORTHO05D000550 4.1e-16 90.5 188 30.9
Nitab4.5_0000672g0110 Nicotiana tabacum HOM05D002984 ORTHO05D003561 9.2e-16 89.4 191 31.9
PGSC0003DMG401000817 Solanum tuberosum HOM05D002984 ORTHO05D003561 9.2e-16 89.4 263 29.7
SMO118G0238 Selaginella moellendorffii HOM05D002984 ORTHO05D003561 5.9e-15 86.7 313 25.9
SGA_v2.0_scaffold124G33581 Striga asiatica HOM05D002984 ORTHO05D003561 7.8e-15 86.3 179 31.3
GSVIVG01008248001 Vitis vinifera HOM05D002984 ORTHO05D003561 3.3e-13 80.9 126 37.3
Lsat_1_v5_gn_4_19021 Lactuca sativa HOM05D002984 ORTHO05D003561 9.5e-13 79.3 169 30.8
CAN.G674.44 Capsicum annuum HOM05D002984 ORTHO05D003561 2.1e-12 78.2 338 26.0
Solyc05g009710.4 Solanum lycopersicum HOM05D002984 ORTHO05D003561 4.7e-12 77.0 152 33.6
Sc04g0003680 Simmondsia chinensis HOM05D002984 ORTHO05D003561 1.0e-11 75.9 503 23.3
Oeu010774.1 Olea europaea HOM05D002984 ORTHO05D003561 6.8e-11 73.2 127 33.9
Actinidia39817 Actinidia chinensis HOM05D002984 ORTHO05D003561 1.2e-10 72.4 240 26.7
Glyma.01G086201 Glycine max HOM05D002984 ORTHO05D003561 1.2e-10 72.4 124 36.3
SMO356G0715 Selaginella moellendorffii HOM05D002984 ORTHO05D003561 1.2e-10 72.4 238 26.5
Peaxi162Scf00004g01518 Petunia axillaris HOM05D002984 ORTHO05D003561 5.8e-10 70.1 116 34.5
BcaC05g26654 Brassica carinata HOM05D002984 ORTHO05D003561 9.8e-10 69.3 181 30.4
CiPaw.16G003900 Carya illinoinensis HOM05D002984 ORTHO05D003561 1.3e-09 68.9 333 23.1
Lalb_Chr11g0074751 Lupinus albus HOM05D013640 ORTHO05D014229 2.9e-09 67.8 69 37.7
Lj6A762T42 Lonicera japonica HOM05D002984 ORTHO05D003561 3.7e-09 67.4 110 33.6
Lj6C764G13 Lonicera japonica HOM05D002984 ORTHO05D003561 3.7e-09 67.4 110 33.6
Nitab4.5_0000489g0040 Nicotiana tabacum HOM05D002984 ORTHO05D003561 6.4e-09 66.6 126 31.7
ClCG05G022960 Citrullus lanatus HOM05D002984 ORTHO05D000550 8.3e-09 66.2 143 29.4
ECA246G2084 Erigeron canadensis HOM05D002984 ORTHO05D003561 7.0e-08 63.2 185 31.4
Pp3c25_2430 Physcomitrium patens HOM05D002984 ORTHO05D003561 2.7e-07 61.2 126 33.3
Sopen05g005530 Solanum pennellii HOM05D002984 ORTHO05D003561 2.7e-07 61.2 109 34.9
Nitab4.5_0000489g0030 Nicotiana tabacum HOM05D002984 ORTHO05D003561 7.8e-07 59.7 107 30.8


User provided reference genes

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